calhm5.1 (LOC107704861,LOC107716815,LOC107587898,LOC107711741,LOC107552825)


Basic Information

Item Value
gene id calhm5.1
gene name LOC107704861,LOC107716815,LOC107587898,LOC107711741,LOC107552825
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23362337 ~ 23367373 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043259989.1
ACGATTTGTGATCTCATATTTCAACAGGAAGTACATTAATGCGTTTTTCATGAAGTAATCAtgtataatttgaaaataacacTGCTGAAAGCTCactcaaaaaaatcaatatttaccATTTGCGGTTAGCATTAAAGTGAAGTGTTTAAGGGAGAAGAGCAGGGCACTATAGCGCAGAACAGAAACTGACGTCTAATACAAAACCAGAATGAATCACTTCCTATTTTAACAAGCATTGTGTTGCAATAAACCTCTTTGTTTGACATAACACGCACTAATCTGCCGTCCCAGCCTCTAGATTTCCAAATTCCGTTGATACCAACCTCCATATTCTGgtattccaaaaataaaaagcacattgtCAGTCGCAAAGCTCAGCTttttactgaaacaaaaatggcattgttggtattttatttgtttgactgCCGTTGCATGATGTGGAAACACATCTGTAGTCTGTTGTGACTTCTGGCAGAACCTGATGGGCTGGTTTTGGTCCTTCACTGAATGGGAGGAGGAAAAGGATGGACAGGGGAGGGATCTGATGGGCTGTGGGGAAgccagagaaagaaaaggaagagaTAAAGGAAGTGTGGAAAACAAAGTGAAATAAGAGATTGAGAAAAGGGAGTGCCAAAGCACAGATCATCTCTTTCAGTTCAGCAGCTTATTTGGAGCTATGTCTGTACCAGCTATGGATTCTTTTAAGACTGTCCTAAAATTCCTGACCAACCAGAAGACCACTATTGGCTACAGCTTCATGGCTATTTTGACAATAGGCAGTGAACGAATTTTCTCCATGGTGTCTTTTCAGTGTCCGTGCAACCGCAGACAGAATTTTGCCTATGGATTAACTTTTCTGATCGGCCCTGCTGTTGTCTTGCTGGCGATTGGACTCTTTGTTAGCACACGTCTTTGGCGGTTATATACTGGGTGTTGTCTCAACCCTTTCAAACTGTGCCCAAGGGGTAACTTTATGGGATGTTTGCAGGTGTTTGTGAAAGTGCTATCTGGAGCCTGCATTGCTCCTATCATGTGGCTTAGTGTAGCTTTGTTAAATGGAACTTTTTATGAGTGTGCTGTTAGTGGTCTGCATGAAAATATGGTGGTGCAAATGTTCTGCAAAAATAAGACACGTACGTGCCAGGACGAGCTCCCCCGAATTCCCTGCAGCAAGTCCCAACTGCCTCCGAATGAAAACATGGAACTGCTGTTGATGTTACGAGCCCAGTCACAGATCCTCGGTTGGTCTATCATTATCATATCAGCAACAGTAGCCCTAATTGGAACATGCTTTAAGAACTGTCGCTCTAAAGTAAGCTACCTTCAGTTAACTTTCCAGAAGATCTACATGgagaaggaaaaggaaaagtttGAGGTGTACGCAGAAGATTATGCCACCAAACTGGCGGAGAGAAACCTCAAGAGTTTCTTTGACAACAAAAGTCCTGAACCATTTCCCTTTCCGAATCACAAGGCCTGGGAAGAGATCTCTGCTGTATACACTTTTAAGCAAAGTGAACAGTACTACAGCACACTTCAGAGATATGTGGAGCGCACAGACAGGGACTACAGCCCTGAGAAGCGTCCAGTTCTAGAGGGGCTAGATGGCATCGAGATGACATAGAGAGACATGGACTAGTAAATGAAATGAAGTGGAAGTGGTCTTTGCACTATTCAAACAGCAAATACTTACAGTTTTACACCTTTATATCAGTGAACCAACACAGATCTCAGGCCCTATAAAGAGacgatgacagatttttttgacACTTCCCAAACAACGTTCAATTTGCATGCTGTCTGAATGTTGTATTTCAGGATTTACaaagtctaaaaagaaaaataaattctcAGGGTATTTGTCATTCATTGTTAAATCAACAATGATGTCAAATTGTATCTATGTCAAacagcaaaattaaaaacatgttaaccACAATGCTCATTTCCTCTGCTGGTTTTAAGCAGAAGATTTGACAAACAGGAAACCCACATTCAGAGTCCCCAACGCTCATTTCTCTAGTAGTTTTGACCTACAAATGGAGCCCTTGTGATCAAAATAAGGTTCTCTTAGTATAGCTTTTCAAGAAAGCAAGGTCCAGTTACTACAGAATGtcacaaatatttcacataGTAAGGTAGTGGTTTCCGGCATTTCTGTGGTATGCATTTCCTGCACTGTTGTGAAAGAGAAGTAAATATACTCAGGTTAATAGTCAGTGAAACTAATtaccaaatacataaataaactgtGTTATTCAATGtaagtttaaagttaaagttgAGTGTGTAACAAAATGTAGCCTAATAACTAATGGCATTAAAATTGAGTCAGAGCCACAGTCTTGTGTACAAAGCTATGAGATATATAGCAGCTGACCTATGTCTTTGCTCAAGGTTCTttcctttaaaagcaaaagGACAGGGGTAAcacaatataataacaatatatataataactaatatataataactaatttttcttaaatatatacatgcatgtgtgtgtatttatatatacataatagatatacacagtacataaatgtaatgtaaacaaaaactttttggatgcaaataattgcaatgaattgtttgacagcactgatcaTGTAACATCTTAAAATGAAGTTTAAGCAGCACAGGCAATGTCAATGTCAAAAAACAATCTAAGTTGTACTAACAAAATCTGttacaatacaaataaagttgaatgaatgaatcgtTCACCAAATGGAACTACAAATGACAACAAGGAACTACAATGACAAGCACACAGTCcgtctgcttgctctgatttaaataacaaatgatatatatttgttctgaaagctaacattttttgtatttgtttttttttgttaccttGCCTAtgtatttatactattttttattatttgcatttatggtatgaatgtatattgtttgggcttttaaaaaaatgcagaaaatgtatactttcttctaccctgctgaaaaaaaggcAACCTACACAATCCTTGTTTGTTTAACTGGTAAATgaccaattaaaatgtattgctggttaacaataaaaaagtgtgtttgtaa

Function

NR:

description
PREDICTED: protein FAM26E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043259989.1 True 3075 mRNA 0.37 2 23362337 23367373

Neighbor

gene id symbol gene type direction distance location
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695,LOC107552826 coding downstream 963 23358473 ~ 23361374 (-)
kpna5 kpna5,LOC107704934,LOC107716841,LOC107552832,LOC107711738 coding downstream 14323 23339451 ~ 23348014 (-)
cnot3a cnot3a,LOC107711735,LOC107587779,LOC107700763,LOC107552836,LOC107704926 coding downstream 47576 23306694 ~ 23314761 (-)
LOC122359881 LOC107716830,LOC107587785,LOC107682987 coding downstream 95865 23264286 ~ 23266472 (-)
LOC122360080 NA coding downstream 100383 23258003 ~ 23261954 (-)
calhm6 fam26f,LOC107700692,LOC107552824,LOC107716816 coding upstream 128 23367501 ~ 23368953 (-)
mms22l mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675 coding upstream 22050 23389423 ~ 23403630 (-)
fbxl4 fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759 coding upstream 159715 23527088 ~ 23536822 (-)
faxcb faxcb,LOC107587769,LOC107700756,LOC107711729,LOC107704942,LOC107716849,LOC107552822 coding upstream 189402 23556775 ~ 23566844 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding upstream 199685 23567058 ~ 23572317 (-)
G115669 NA non-coding downstream 34444 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 172687 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 194397 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 284467 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 288887 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 448524 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 449527 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 453146 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 677387 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 710258 24077631 ~ 24077867 (-)
G115554 NA other downstream 428370 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 461150 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1273245 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1393802 21964855 ~ 21968535 (-)
G115149 NA other downstream 1558533 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 152435 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 215620 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 300692 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 950109 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 997267 24364640 ~ 24369566 (-)

Expression


Co-expression Network