ddc (ddc,LOC107551213,LOC107746968,LOC107601670,LOC107751878,LOC106605416)



Basic Information


Item Value
gene id ddc
gene name ddc,LOC107551213,LOC107746968,LOC107601670,LOC107751878,LOC106605416
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 9929336 ~ 9945606 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043260001.1
GCGGCAGGGCTGATAAACCCCCAGGCTTCCCTGCTGTTCCACATCACTCTGCTTTGCTCTGTGCGCGCGCGTATacgtgtttatatgtgtgtttgaaacaaacaagaaagagcGTAAGGACAGACGAGAGGGAGGACTCTTCTGACACTGTAAAAACATGGATGCAGCAGAGTTCCGGAGACGAGGGAAGGAGATGGTGGACTATGTGGCAGATTACTTAGAGAACATTGAGAAGAGGCAGGTTTACCCTGACGTGGAACCTGGATATCTCAGGTCACTGATTCCTGAGGAGGCCCCGGAGGAGTCAGAGAGCTATGAGGATGTGGTCAAAGACATAGAGAGGGTGATCATGCCAGGGGTGACACACTGGCACAGCCCGTACTTCTATGCATACTTTCCTACAGCCCACTCTTTTCCTGCAATGCTGGCTGACATGCTGTGTGGAGCCATTGGCTGCATTGGATTCTCTTgggcAGCGAGTCCTGCCTGTACAGAGCTAGAGACAGTGATGCTGGACTGGCTGGGGAAGATGCTGAAGCTACCAGAGGATTTCCTGGCTGGTACAGAGGGCAGAGGGGGTGGGGTCATTCAGGGTACTGCCAGTGAAGCCACTCTCATAGCTCTTCTTGCTGCTCGCTCCAAAATCGTCAAACTGATCCAGGCTGACCATCCTGACCGATCTGAGACAGACATTATATCCAAACTAGTCGCATACTCATCTGATCAGGCACACTCATCGGTGGAGAGGGCAGGTTTGATAGGTGGAGTAAGGATGAAGAAAATTCCCACCGACAATAAGTTTTCTGTGCGAGGAGCTGCACTGCAGAAAGTTTTAGAAGAGGACAGAGCCGCAGGACTCATAccattttttTTTTGTGCAACATTGGGAACAACTCCATCCTGTGCATTTGACCGCGTCACTGAGCTCGGCCCTATATGTAATGCAGAGAAAATCTGGATGCACATTGATGCTGCATATGCTGGGAGTGCATTTATCTGTCCAGAGTTCAGACCCCTGCTAAATGGAGTAGAGTTTGCAGACTCTTTCAATTTCAATCCTCATAAATGGCTCCTGGTGAACTTTGATTGCTCAGCAATGTGGGTGAAGAAAAGATCAGACATCATTGGAGCATTTAAAATGGAGCCGCTTTATCTGAAGCATGATCACCAAGAGTCAGGACTTGTGACTGATTATAGACACTGGCAGATCCCATTGGGTCGTAGGTTCCGCTCTCTCAAGATGTGGTTTGTGTTCCGCATGTACGGACTCAAAGGTCTCCAAGCCTACATCCGCAAGCATGTAGGACTGGCCAAAGAGTTTGAGACTTTGGTGAGAGCTGATCAACGCTTTGAGATCTCCGCTGATGTTGTGCTGGGCCTCGTCTGCTTTAGACTCAAGGGCTCCAATGAATTAAACGAAACTCTGTTGAAGAGGATCAACAGCGCACGTAAGATCCATCTGGTACCGTGCCAACTGGCAGGCAAGTTTGTTCTGCGGTTTGCCGTGTGCGCCCGTACTACTGAGTCACGGCATGTTCAGGAGGCCTGGAGCCACATCAGCCACCTGGCATCGGAGCTGCTTCAGGAACTGCCCCACTGACCGCTACGGTGGGCATCACATGTTAAGACAAATGGGTGATCTGTATCACGTCTGCTATCCACACTGTCTTACTTTCACTCTACTGCTGCGGTTCTTTCTACTATTTATTGTCAAAACGTGTGTATGCGAGTGTATGCATGTTTGTCACAACGGTGTCCACCAAGAGTGCAGAGCTCCTGTGTCTTTGTGAGCTTGATCATACGTGTCCTTCTTCTGTGAGCATTGCTTTTCCCAAAAACCGTTGTATACTTGTGCACTTGAAAATGTGTCtatattgaaaatgaaatacGTTTTGTAAGATGTCGTGAGAATGTTTTTCTCTCAATAAGAGTCAAAATGCTTTACCGGGCATCGTCCTTTACTTATTTCACTATAGCTTTGCTCACTCATGCTGCATTTTCATAAagcaaaatcaaatatttcctTCTTTTCTGAAAGCGTTGTTCTTGACAGCTGCTGTGATGAGATACCTCACCAACATTCTTTGACAGCTGTTGTGCCCGAAtagttaaaaaagattaaacagtagtgtgtgtgtatgtaataacACTGACAATAAAGTGCATTTCTCCCAAA

Function


symbol description
ddc Predicted to enable aromatic-L-amino-acid decarboxylase activity. Acts upstream of or within brain development. Predicted to be active in cytoplasm. Is expressed in digestive system; muscle; nervous system; ovary; and pharyngeal arch. Human ortholog(s) of this gene implicated in Parkinson's disease; aromatic L-amino acid decarboxylase deficiency; bipolar disorder; and inherited metabolic disorder. Orthologous to human DDC (dopa decarboxylase).

NR:

description
PREDICTED: aromatic-L-amino-acid decarboxylase

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0007420 brain development biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01593 DDC, TDC; aromatic-L-amino-acid/L-tryptophan decarboxylase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043260001.1 True 2176 mRNA 0.47 14 9929336 9945606

Neighbor


gene id symbol gene type direction distance location
entpd3 entpd3,LOC107732432,LOC107657573,LOC107751912,LOC107704086 coding downstream 14994 9904473 ~ 9914342 (-)
snrka snrka,snrk,LOC107723077,LOC107551216,LOC107657578,LOC107601674,LOC107704097,LOC107751880 coding downstream 70705 9818586 ~ 9858631 (-)
abhd5a abhd5,abhd5a,LOC107657580,LOC107751913,LOC107704099,LOC107723076 coding downstream 142244 9778317 ~ 9787092 (-)
tcaim tcaim,LOC107657582,LOC107723074,LOC107751885,LOC107601675,LOC107704100 coding downstream 214685 9705840 ~ 9714651 (-)
trim71 trim71,LOC107751884,LOC107601676,LOC107704101,LOC107657583,LOC107723073,LOC107551222 coding downstream 227069 9678223 ~ 9702267 (-)
grb10b grb10b,LOC107746967,LOC107551212,LOC107751877,LOC107601668,LOC107704094 coding upstream 1745 9947351 ~ 10010750 (-)
cobl LOC107684220,LOC107551210,LOC107746964 coding upstream 69333 10014939 ~ 10054825 (-)
triob triob,LOC107746974,LOC108429234,LOC106579830,LOC106605411 coding upstream 153957 10099563 ~ 10194294 (-)
adcy2a adcy2a,LOC107664610,LOC107551198,LOC108429235,LOC108272199 coding upstream 341480 10287086 ~ 10354596 (-)
LOC122361022 LOC107572826,LOC106588695 coding upstream 418815 10364421 ~ 10372271 (-)
G111097 NA non-coding downstream 53672 9875392 ~ 9875664 (-)
G111048 NA non-coding downstream 174356 9754315 ~ 9754980 (-)
G111045 NA non-coding downstream 252831 9674864 ~ 9676505 (-)
G111025 NA non-coding downstream 305217 9623700 ~ 9624119 (-)
G111024 NA non-coding downstream 308883 9620119 ~ 9620453 (-)
G111298 NA non-coding upstream 784562 10730168 ~ 10730415 (-)
G111329 triob,LOC107746974,LOC107551199,LOC107684227,LOC107601652,LOC107751902 non-coding upstream 845958 10791564 ~ 10793616 (-)
LOC122361039 NA non-coding upstream 978509 10924115 ~ 10924764 (-)
G111393 NA non-coding upstream 1214233 11159839 ~ 11160056 (-)
G111420 NA non-coding upstream 1279580 11225186 ~ 11225409 (-)
gask1a fam198a,LOC107732434,LOC107657576,LOC107751903,LOC107704082 other downstream 26355 9877211 ~ 9902981 (-)
G110974 NA other downstream 656731 9270971 ~ 9272605 (-)
G110911 LOC107749154,LOC107686954,LOC107596765,LOC108428931,LOC108268943,LOC107751895,LOC107656720 other downstream 777153 9145930 ~ 9152183 (-)
wu:fj39g12 nppcl,LOC107744681,LOC107699924,LOC107749278,LOC107685603 other downstream 1293114 8633350 ~ 8636222 (-)
G110556 NA other downstream 1612651 8312265 ~ 8316685 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other upstream 799970 10745576 ~ 10764305 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other upstream 911914 10857520 ~ 10883424 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other upstream 1324014 11269620 ~ 11286432 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other upstream 1387569 11333175 ~ 11386993 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other upstream 1465072 11410678 ~ 11411777 (-)

Expression



Co-expression Network