trim46a (trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016)


Basic Information

Item Value
gene id trim46a
gene name trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15151744 ~ 15163625 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260021.1
TCTCACAACATCCATCGACTACATGATGGCTCAAGATCCGTCAGAACAGACCACAGCAAGCACTGTTGGAAAACCCCTAAATCAACATGGACTGGGTTAAATCGGACCtatcatatatattatacaccaataatataattataacttAAAGGTTCGTCTTATAGCCGTCAATTTCAGTCGCAGGTACAACCATATCGGTTTATCTCGCGGTGTCCTGATAGTATTAAGCTGCTAGTCGTGTTTAATGATTCTATAAAGAGAAAAGAGCTCTCGATAATAGcgttatttcatttaatatcaatttaaccACCGGTATAGAACAGCAATGGCAGACGCGGAGTTGCAAACCTTTACATCCATAATGGACGCTCTCGTGCGCATCAGCTCCAACATGAAGAGCATAGAGCGAGAGCTGCACTGTCCAGTGTGTGAGGAGATGGTGAAGCAGCCGATCGTGTTGCCTTGTATGCACagcgtgtgtgtgctgtgtgcgGCAGAAGTCTTAGTTCAGAGAGGATACCCTCCACCCGAACTCCCCCCAGAACCCAACACTCCCAACTCAAGCCCCATCACCCGCTCTCCCCGACAGACACGCCGGCCTCCCCCCAAAACAGACCGTCTAGACCGGGTGATCAGAACAGTGTGCGGAACACATCCAGGACGCAGGCGTAAAGACACCCCTCCTGTGATCATGTTGTTCCCCTGTCCCACCTGCGGAAAAGATGTGGAGCTGGGAGAGAGAGGGCTTGCAGACTGTCTGAGAAACCTCACGCTGGAGCGCATAGTGGagagGTACAGGCACACCGTGAGTCTCGGCAGCATGGCAGTCATGTGTCAGTTCTGCAAACCTCCTCAGGCTCTGGAGGCCTCCAAAGGCTGCGCTGACTGCAGGTCTAACTTCTGTAACGAATGCTTCAAGCTGTACCACCCCTGGGGCACGCCACGAGCCCAACACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTATTAGTGTGTGTGGAACACGAGCAGGAGAGGTTGCAGTTTTATTGCAGGTCATGTCAGCGTTTGTTATGCGCACTTTGTAAACTCCGTCGAGCCCACAGCGGACACAAAATCATGCCTATTGCTCTGGCTTACCAAACGCTAAAGGAGAAGATCACCAAGGAGATGAACTACATCTTGGCCAATCAGGAGTCTGTACAGGCACAGATCACCCAAGTCGAGAGCGGCATTGCTCAGACTGAGGTGAACAGCGCAGTGGCTAAGGAGCAGCTGAATCATTGTGTGAGTGAACTGCGCGGTGTGCTGGCGGAGCGTCAGGGGGCCCTGGCCATGTTTTTGGAGGGGGCTCGTGCACAGCGAGCAGGGGCTTTGAACACACAGCTCTCTGAAAAACAGAGTCTTTTGGAAAACGCAGGGCTGCTCACATACACTCAAGAGCTGCTTAAGGAAACCGACCAGTCGTGCTTTGTGCAGGCCGCCAGAGTCACGCACAACAGACTGGTAAAAGCAATAGAAAATCTACAGCATTTCTCTCTATCTGCTGATCCCTCGTTTCGACACTTTCAGATGGACGTATCCAGAGAACTCAAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAAAAGACCTTGGCCTATGACCAGCTGTATTTGTGCTGGCGCCTCCCACAGGACTCCGCCCCCGCTTGGCATTACTCAGTGGAGTATCAGAGGAAAGTGGGCGGTGCTGGAGCATTATGGGGCAGAGTCTTGTCTGAAGGAAGCTCAGGAAGTAGTGGCACGCACTGCTCATGGCAGCGTCTGGATGATGTGGGCGGGACCAGTGCAGTGATTGACAAGCTAGAGATGGACAGCGTGTATGTCCTGAGAGTTCGAGGCTGTAATAAGGCAGGCTTTGGAGAGTACAGTGAGGAGGTGTATCTACACACACCTCCTGCACCAGTGTTGTCGTTCTGCCTGGATTCGCGCTGGGGCCTACATGCGGAGCGGGTGGCGCTGGGAAAAGGGCAAACGTACGCCCGGAGTGTTCCTGGAATGACTCTGTTGCAGGCTGCTGATCGGGCCCTCACCTCATGTCACCTCACCTCTGACCTCCTTGTGGCCGATGTTTCCATCACACAGGGacgacattactgggcatgctCAGTGGAGCCTGGATCCTACCTGGTTAAGGTGGGAGTAGGTATTGAAGCAAAACTACAAGAGTGGTTCCATCTTCCACAAGACATGGCAAGTCCACGATACGATCCAGACAGTGGTCATGACAGCGGTGCAGAGGATGCACAGGACTGTCCTCCTCCTTTCTGTTTCCTTACAATGGGCATGGGCAAGATCTTACTACCCAAGTGTGGGGCATCTAATACATCTACCGGCCCCCTCACCGCCCCCTTACCACCTCGCCTAGGACTGTGTCTGGACTTCGAGAAGGGGCGGCTCACTTTTTACGACGCACACTCCTTGAGAGTGCTGTGGGAGGGGACTGTTGATTGTTCTGCGCCTGTTTGCCCAGCGTTCTGTTTCATTGGTGGAGGTGCTCTGCAGCTGCAAGAGCTAATAGCCAACCGCAGCACAGAGCAGAACCCACCAAGAAGAGTGACCATCCAAACACGAGTCACCGACGCCGGCCGCTAAACCGCCTGGTCGCTTTAAAACTAGTCAAATGAGCACCTTTAAGCAAATCTTCTTTTATCGTTTTTTATCGACTTTGTTTACCTGCTTATTTCGTAGCTAATGATGCAatgaatgattatattttatattaagattcatttaatttcaaaggATAGACAATAAAACGTGGTTATGGATGCTAACAACATGTAGCATGCTAACAACATCTAggtcaatattaaataatgaggaattgttcttttttatggccacaaaatgtaaaaaatgaaatcaggTATGATTCAGGTCCACTCATAACACCTTCATTTTGAACATTCTTATGAAAGCAAATGATTCCTCGTTATTTACAAACTCGTTCTCCAGCATTGTTAGCATGCGAACCGCCTAATAAGGGTGTGCTAATAGTTAGTAAACAAACTGATTTGTTCATTAACATTGTATGTGCTCTTTACAGGAATGTATCAATGCCTTGAAATGTGATCAAGTTGCAATTCAAATCCATAGAGACAGTTCACGGCTGTCTTGTTTATCAGTTTCATGTTTCTAAGTAGTTCCCAATGTCCTTGAATTGTCTTGCTACTATGAGGCTCAACCAAGATGCTAAACATTTGGTTGGACATGTTGTATTGGTGTCAGTACACGTCCTGTGCATAGAGACCTTGTCTGTTTGGTTTGTTTGGGCCAAAACAGGGCTGATGGATGCCTTCAGCAAGCGAAACTAAAAGAACAACGGTGTAATGAAAAGAACCTGCTTTTGTGAGATCTCTACAGGTGCCTGCTCTTGTGTTACACAACCCGACTCTCCCATTTGAATGTcctataaaataacaatgtttgACACAcctcatactttttttttcataatcatGACGGTCATTGTcatgtcttttgttttctttttgcaaaatgGGTACGGTGACAACAATTTAGCGGGTTAAATTTAATTGCAGAAATGGATGCTGCTTATGACCGTGCAACTGTCAGTCATTAGAGTGTGTGCTGTTGAAAGGAAATGTTTGAATTGTATACTGAatgttgtatttattgtgtatgtgtgtgtgtgtgtgagtgagagagtgtgataTGTTATTGCAATAAAGACAGTTGCTAAAAGCTCTAGTTTTGGCCATGTTTTCTGCTATTTGGATGCATTGTTGCAGATTCAGGTCTCGTGTGAATTTATATTGATGTTGAGGATATTATGTAGCATTTCTTAAACATGCTGATCCTTTGAAAATTggcaaaatgtttgtaaatgacACTAATGTCGGAAGTGAAATAAAGCATCAACGTTT
>XM_043260022.1
TCTCACAACATCCATCGACTACATGATGGCTCAAGATCCGTCAGAACAGACCACAGCAAGCACTGTTGGAAAACCCCTAAATCAACATGGACTGGGTTAAATCGGACCtatcatatatattatacaccaataatataattataacttAAAGGTTCGTCTTATAGCCGTCAATTTCAGTCGCAGGTACAACCATATCGGTTTATCTCGCGGTGTCCTGATAGTATTAAGCTGCTAGTCGTGTTTAATGATTCTATAAAGAGAAAAGAGCTCTCGATAATAGcgttatttcatttaatatcaatttaaccACCGGTATAGAACAGCAATGGCAGACGCGGAGTTGCAAACCTTTACATCCATAATGGACGCTCTCGTGCGCATCAGCTCCAACATGAAGAGCATAGAGCGAGAGCTGCACTGTCCAGTGTGTGAGGAGATGGTGAAGCAGCCGATCGTGTTGCCTTGTATGCACagcgtgtgtgtgctgtgtgcgGCAGAAGTCTTAGTTCAGAGAGGATACCCTCCACCCGAACTCCCCCCAGAACCCAACACTCCCAACTCAAGCCCCATCACCCGCTCTCCCCGACAGACACGCCGGCCTCCCCCCAAAACAGACCGTCTAGACCGGGTGATCAGAACAGTGTGCGGAACACATCCAGGACGCAGGCGTAAAGACACCCCTCCTGTGATCATGTTGTTCCCCTGTCCCACCTGCGGAAAAGATGTGGAGCTGGGAGAGAGAGGGCTTGCAGACTGTCTGAGAAACCTCACGCTGGAGCGCATAGTGGagagGTACAGGCACACCGTGAGTCTCGGCAGCATGGCAGTCATGTGTCAGTTCTGCAAACCTCCTCAGGCTCTGGAGGCCTCCAAAGGCTGCGCTGACTGCAGGTCTAACTTCTGTAACGAATGCTTCAAGCTGTACCACCCCTGGGGCACGCCACGAGCCCAACACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTATTAGTGTGTGTGGAACACGAGCAGGAGAGGTTGCAGTTTTATTGCAGGTCATGTCAGCGTTTGTTATGCGCACTTTGTAAACTCCGTCGAGCCCACAGCGGACACAAAATCATGCCTATTGCTCTGGCTTACCAAACGCTAAAGGAGAAGATCACCAAGGAGATGAACTACATCTTGGCCAATCAGGAGTCTGTACAGGCACAGATCACCCAAGTCGAGAGCGGCATTGCTCAGACTGAGGTGAACAGCGCAGTGGCTAAGGAGCAGCTGAATCATTGTGTGAGTGAACTGCGCGGTGTGCTGGCGGAGCGTCAGGGGGCCCTGGCCATGTTTTTGGAGGGGGCTCGTGCACAGCGAGCAGGGGCTTTGAACACACAGCTCTCTGAAAAACAGAGTCTTTTGGAAAACGCAGGGCTGCTCACATACACTCAAGAGCTGCTTAAGGAAACCGACCAGTCGTGCTTTGTGCAGGCCGCCAGAGTCACGCACAACAGACTGGTAAAAGCAATAGAAAATCTACAGCATTTCTCTCTATCTGCTGATCCCTCGTTTCGACACTTTCAGATGGACGTATCCAGAGAACTCAAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAAAAGACCTTGGCCTATGACCAGCTGTATTTGTGCTGGCGCCTCCCACAGGACTCCGCCCCCGCTTGGCATTACTCAGTGGAGTATCAGAGGAAAGTGGGCGGTGCTGGAGCATTATGGGGCAGAGTCTTGTCTGAAGGAAGCTCAGGAAGTAGTGGCACGCACTGCTCATGGCAGCGTCTGGATGATGTGGGCGGGACCAGTGCAGTGATTGACAAGCTAGAGATGGACAGCGTGTATGTCCTGAGAGTTCGAGGCTGTAATAAGGCAGGCTTTGGAGAGTACAGTGAGGAGGTGTATCTACACACACCTCCTGCACCAGTTGATGTTTTCATCCATCTATTTCATCCATtctccattcatccattcatcaaTGTATTCATTGActgatttattctttttgttcatttttgctttttcactTGGCATCtatgcatttgtattaattatgcatcaatttattgaataattcatttgtttatatgaactcatccatccatccatccatccatcttccatttatccatccaaccatgcattaaattgtccgtttgtttgtttgttttcactcaCTTGTTCATTCATCCATATAGGTTCATGGTTATGTATCATGGTTCATCTGTTTCATTGATTCGTTAAACCATTATTCTATcttccatctatccatccatgcactcattcattaattcttctgtttgttcatttgtttgattGTCCATGCATTTGTCTATAAGTATGAACTCATATGTAATTTTTTGCATCTATCAGAATTCTGTCAAACTGATCTTGTTGAGCTATTACATGTAGGCCTATATCGCATTCTCTTTATTTGTCTCTCATACATTTGATTCTGTTGCTTATCAGTAGAATATTTCTCCATGCATATCCACAACTCTTTGACACGTCTCTGTTTTTGCTCTTCTCTCTATATTATTTCTCCTTATGTTTCCTGTTATTCTCCACCTTCCTTTGCTCCCGTTATCTCTGCTGTTTCTTTGACTTGTATTCCTGTTTAACTGGAATATATAAGCTGCTTGATCTCCTCTGAATCCTAAAGTCCTTGAATATGTACAATGTTCCAGCTGTCCTCTTTGTTTCCTTCTTTTCTCCAAAACTCATTTCTTCCCCTTTTCGCTTATCCATATATAACCCCCTCTTTCCTCTCCTATTTATGTTTTCACTCCCTCATCCTCTTTTCGTTTGTGTTCTGCTCCTTCTGACCTGGCATTCCAACCCTGTCCTCCGCTCCATTTCTCCTGCATACCTCAATCTCAGTGTTGTCGTTCTGCCTGGATTCGCGCTGGGGCCTACATGCGGAGCGGGTGGCGCTGGGAAAAGGGCAAACGTACGCCCGGAGTGTTCCTGGAA
>XM_043260023.1
TCTCACAACATCCATCGACTACATGATGGCTCAAGATCCGTCAGAACAGACCACAGCAAGCACTGTTGGAAAACCCCTAAATCAACATGGACTGGGTTAAATCGGACCtatcatatatattatacaccaataatataattataacttAAAGGTTCGTCTTATAGCCGTCAATTTCAGTCGCAGGTACAACCATATCGGTTTATCTCGCGGTGTCCTGATAGTATTAAGCTGCTAGTCGTGTTTAATGATTCTATAAAGAGAAAAGAGCTCTCGATAATAGcgttatttcatttaatatcaatttaaccACCGGTATAGAACAGCAATGGCAGACGCGGAGTTGCAAACCTTTACATCCATAATGGACGCTCTCGTGCGCATCAGCTCCAACATGAAGAGCATAGAGCGAGAGCTGCACTGTCCAGTGTGTGAGGAGATGGTGAAGCAGCCGATCGTGTTGCCTTGTATGCACagcgtgtgtgtgctgtgtgcgGCAGAAGTCTTAGTTCAGAGAGGATACCCTCCACCCGAACTCCCCCCAGAACCCAACACTCCCAACTCAAGCCCCATCACCCGCTCTCCCCGACAGACACGCCGGCCTCCCCCCAAAACAGACCGTCTAGACCGGGTGATCAGAACAGTGTGCGGAACACATCCAGGACGCAGGCGTAAAGACACCCCTCCTGTGATCATGTTGTTCCCCTGTCCCACCTGCGGAAAAGATGTGGAGCTGGGAGAGAGAGGGCTTGCAGACTGTCTGAGAAACCTCACGCTGGAGCGCATAGTGGagagGTACAGGCACACCGTGAGTCTCGGCAGCATGGCAGTCATGTGTCAGTTCTGCAAACCTCCTCAGGCTCTGGAGGCCTCCAAAGGCTGCGCTGACTGCAGGTCTAACTTCTGTAACGAATGCTTCAAGCTGTACCACCCCTGGGGCACGCCACGAGCCCAACACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTATTAGTGTGTGTGGAACACGAGCAGGAGAGGTTGCAGTTTTATTGCAGGTCATGTCAGCGTTTGTTATGCGCACTTTGTAAACTCCGTCGAGCCCACAGCGGACACAAAATCATGCCTATTGCTCTGGCTTACCAAACGCTAAAGGAGAAGATCACCAAGGAGATGAACTACATCTTGGCCAATCAGGAGTCTGTACAGGCACAGATCACCCAAGTCGAGAGCGGCATTGCTCAGACTGAGGTGAACAGCGCAGTGGCTAAGGAGCAGCTGAATCATTGTGTGAGTGAACTGCGCGGTGTGCTGGCGGAGCGTCAGGGGGCCCTGGCCATGTTTTTGGAGGGGGCTCGTGCACAGCGAGCAGGGGCTTTGAACACACAGCTCTCTGAAAAACAGAGTCTTTTGGAAAACGCAGGGCTGCTCACATACACTCAAGAGCTGCTTAAGGAAACCGACCAGTCGTGCTTTGTGCAGGCCGCCAGAGTCACGCACAACAGACTGGTAAAAGCAATAGAAAATCTACAGCATTTCTCTCTATCTGCTGATCCCTCGTTTCGACACTTTCAGATGGACGTATCCAGAGAACTCAAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAAAAGACCTTGGCCTATGACCAGCTGTATTTGTGCTGGCGCCTCCCACAGGACTCCGCCCCCGCTTGGCATTACTCAGTGGAGTATCAGAGGAAAGTGGGCGGTGCTGGAGCATTATGGGGCAGAGTCTTGTCTGAAGGAAGCTCAGGAAGTAGTGGCACGCACTGCTCATGGCAGCGTCTGGATGATGTGGGCGGGACCAGTGCAGTGATTGACAAGCTAGAGATGGACAGCGTGTATGTCCTGAGAGTTCGAGGCTGTAATAAGGCAGGCTTTGGAGAGTACAGTGAGGAGGTGTATCTACACACACCTCCTGCACCAGCTGCTTGATCTCCTCTGAATCCTAAAGTCCTTGAATATGTACAATGTTCCAGCTGTCCTCTTTGTTTCCTTCTTTTCTCCAAAACTCATTTCTTCCCCTTTTCGCTTATCCATATATAACCCCCTCTTTCCTCTCCTATTTATGTTTTCACTCCCTCATCCTCTTTTCGTTTGTGTTCTGCTCCTTCTGACCTGGCATTCCAACCCTGTCCTCCGCTCCATTTCTCCTGCATACCTCAATCTCAGTGTTGTCGTTCTGCCTGGATTCGCGCTGGGGCCTACATGCGGAGCGGGTGGCGCTGGGAAAAGGGCAAACGTACGCCCGGAGTGTTCCTGGAA

Function

symbol description
trim46a Predicted to enable zinc ion binding activity. Orthologous to human TRIM46 (tripartite motif containing 46).
trim46 Predicted to enable zinc ion binding activity. Predicted to be involved in negative regulation of axon extension; positive regulation of anterograde dense core granule transport; and regulation of cellular protein localization. Predicted to act upstream of or within several processes, including anterograde synaptic vesicle transport; generation of neurons; and protein localization to axon. Predicted to be located in main axon.

NR:

description
PREDICTED: tripartite motif-containing protein 46-like

GO: NA

KEGG:

id description
K12022 TRIM46; tripartite motif-containing protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260021.1 True 3942 mRNA 0.47 12 15151744 15163625
XM_043260022.1 False 3004 mRNA 0.47 10 15154318 15163625
XM_043260023.1 False 2296 mRNA 0.51 10 15154318 15163625

Neighbor

gene id symbol gene type direction distance location
si:dkey-247k7.2 NA coding downstream 1676 15147024 ~ 15150068 (-)
shc1 shc1,LOC107714692,LOC107677023,LOC107723450 coding downstream 194509 14927037 ~ 14957235 (-)
LOC122361105 LOC107582131 coding downstream 224848 14926292 ~ 14926896 (-)
pbxip1b LOC107714683,LOC107673634 coding downstream 227227 14913948 ~ 14924517 (-)
s100t LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416 coding downstream 252697 14896221 ~ 14899047 (-)
osgin2 osgin2,LOC107723494,LOC107596464,LOC107714693,LOC107582167,LOC107699543 coding upstream 169033 15332658 ~ 15340225 (-)
LOC122360842 NA coding upstream 178706 15342331 ~ 15342771 (-)
LOC122360653 LOC107596174,LOC107714661 coding upstream 192009 15355634 ~ 15362140 (-)
bcam LOC107714691,LOC107595169,LOC107699531,LOC107657655,LOC107723516 coding upstream 267195 15430820 ~ 15476204 (-)
cadm4 cadm4,LOC107714698,LOC107657657,LOC107699529,LOC107582091,LOC107723444 coding upstream 342434 15506059 ~ 15627109 (-)
G113039 NA non-coding downstream 204360 14946595 ~ 14947384 (-)
G113034 NA non-coding downstream 259349 14892040 ~ 14892395 (-)
G112686 NA non-coding downstream 436253 14715216 ~ 14715491 (-)
G112659 NA non-coding downstream 497594 14591362 ~ 14654150 (-)
G113090 NA non-coding upstream 1372 15164997 ~ 15165440 (-)
G113092 s100a10b,LOC107714718,LOC107595024,LOC105891828 non-coding upstream 4748 15168373 ~ 15170070 (-)
G113125 NA non-coding upstream 144240 15307865 ~ 15308418 (-)
G113136 NA non-coding upstream 161934 15325559 ~ 15428662 (-)
G113147 NA non-coding upstream 183548 15347173 ~ 15348215 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other downstream 136282 14970541 ~ 15015462 (-)
LOC122359907 LOC107594909 other downstream 238098 14908620 ~ 14913646 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other downstream 246837 14899182 ~ 14904907 (-)
LOC122359961 riiad1 other downstream 563875 14582479 ~ 14587869 (-)
dicp3.3 NA other downstream 648608 14498263 ~ 14503136 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 138249 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 201563 15365188 ~ 15375304 (-)
rps19 rps19,LOC107657656,LOC103354132,LOC100689943 other upstream 304855 15468480 ~ 15496413 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other upstream 496127 15659752 ~ 15672151 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other upstream 653354 15816979 ~ 15819086 (-)

Expression


Co-expression Network