rpa2 (rpa2,LOC107713930)


Basic Information

Item Value
gene id rpa2
gene name rpa2,LOC107713930
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5367332 ~ 5379962 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260026.1
GCGCATGCGCACGTTCCGCGCGCGGACTTCAGTCGTGACGTCAGGCAGTGCGCGATCGGCGGTGGCGGGAGATTCTCCGGTGTTTTGTTCGCGGTCGTGTTCAGGAGAAAACGTTAGCAAGTAAAATGTGGAACCAAGGTAAATACGGCGAGGCCAGTATGGTTGGATACACACAGTCTCCAGGAGGGTTCGGGTCTCCAGCCGCTTCTCAGGGAGGAGAGAAGAAAGGGAGAAGTCGAGCGCAGCAGATCGTCCCCTGCACCGTGTCCCAGCTGATGTCTGCGCTGCAGGCGGAGGACGTCTTCAAAGCCGGAGAGGTAGAGATCGCTCAGgtAACTATTGTTGGTGTGATCAGAAGCACTGATAAATCCACAATCAATATCCAGTATAAGGTGGATGACATGACGGCCGCTCCCATGGATGTGAAGCAGTGGATCGACACAGAGGACATGGGTGTGGACAACTCGGTCATTCCTCCAGGCTCTTACGTCAAAGTCTCCGGCAACCTCCGCTCTTTTCAGAATAACCGGTCTTTGGTAGCGTTCAGCGTCCGAGTGCTGGAGGACATGAATGAAGTCACTTCACACATGCTGGAGGTTGTGAATGCTCATATGCAGCAGAGCAAACCACAGGGCACGATGGGAGGAGGCGTGGGAACGAACATGATGCCCGCGGCGCACACTAGCATGAGCTCCACAGGAAGCTACTCTGGCGCTAGTATGATGCTAGTCAATGGTTTGAGTGCTAACCAGAACCAAGTTTTGAGTCTGATCAAGAGCTGTCACGAGCCTCAAGGCATCAGCATGCACGACCTCAAGCAGAAGCTGAGCAGCATGAGCATCACTGTCATCAGgcAAATTGTGGATTTTCTCAGCAACGAGGGACACATATTCTCCACGATCGATGAAGACCACTTCAGGTCAACGGACAACGAGGTCTAATGACTGATgtgcatttctttaataaacCTGTTCATTGTCTACATAGTGTTCacgaggaaaaaaatatatataataatttcagttagttttggtattttaataaaagcactcatttaaagccattttcttttgagttcagcatgctgt

Function

symbol description
rpa2 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in DNA replication; double-strand break repair via homologous recombination; and nucleotide-excision repair. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be part of DNA replication factor A complex. Predicted to be active in chromosome, telomeric region; nucleus; and site of double-strand break. Orthologous to several human genes including RPA2 (replication protein A2).

NR:

description
replication protein A 32 kDa subunit-A-like isoform X2

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10739 RFA2, RPA2; replication factor A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260026.1 True 1088 mRNA 0.50 9 5367332 5379962

Neighbor

gene id symbol gene type direction distance location
ppp1r8b ppp1r8b,ppp1r8,LOC107564517,LOC107689150,LOC107688979,LOC107713931 coding downstream 6914 5355987 ~ 5360418 (-)
LOC122361376 NA coding downstream 7653 5359510 ~ 5359679 (-)
rrp15 rrp15,LOC107598955,LOC107737032,LOC107703929,LOC107689025 coding downstream 190520 5173650 ~ 5176812 (-)
tgfb2 tgfb2,LOC107598937,LOC106584161 coding downstream 196702 5138694 ~ 5170630 (-)
lyplal1 lyplal1,LOC797125 coding downstream 271737 5090511 ~ 5095595 (-)
tpbgb LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023 coding upstream 38511 5418473 ~ 5420640 (-)
bckdhb bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448 coding upstream 128655 5508617 ~ 5559896 (-)
ttk ttk,LOC107713924,LOC107726228 coding upstream 180519 5560481 ~ 5570782 (-)
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding upstream 191539 5571501 ~ 5573800 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding upstream 441029 5820991 ~ 5822850 (-)
G109942 cyp4t8,LOC107559042,LOC107703932 non-coding downstream 19773 5346405 ~ 5347559 (-)
G109914 NA non-coding downstream 46036 5247238 ~ 5321296 (-)
LOC122359853 NA non-coding downstream 159913 5198791 ~ 5207419 (-)
G109907 NA non-coding downstream 175982 5190781 ~ 5191350 (-)
G109906 NA non-coding downstream 176627 5190350 ~ 5190705 (-)
G109953 NA non-coding upstream 16168 5396130 ~ 5396354 (-)
G109956 NA non-coding upstream 17335 5397297 ~ 5397517 (-)
G109944 NA non-coding upstream 55870 5435832 ~ 5437067 (-)
LOC122360242 elovl4a,LOC107726252,LOC107689158,LOC107689169,LOC107713923,LOC107688984,LOC107559048 non-coding upstream 195678 5575640 ~ 5581732 (-)
G110090 NA non-coding upstream 394885 5774847 ~ 5777041 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 121774 5232211 ~ 5245558 (-)
G109724 LOC107084717,LOC106511825 other downstream 1271828 4094757 ~ 4095504 (-)
G109600 NA other downstream 2237353 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3403171 1741120 ~ 1964161 (-)
G109287 NA other downstream 4484580 882459 ~ 882752 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 402705 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 437078 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 522615 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 649246 6029208 ~ 6034777 (-)
G110215 NA other upstream 716713 6096675 ~ 6099927 (-)

Expression


Co-expression Network