tars2 (LOC107558643,LOC107689001,LOC107726246)


Basic Information

Item Value
gene id tars2
gene name LOC107558643,LOC107689001,LOC107726246
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6248919 ~ 6261997 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260033.1
AGTGGACGCTGGTGACGCACGCCTGGCTTCGCTTCTCATTGGTTGTTTCTCACGCAGAGCCCGCCCTCCATCGAATTGTTCGGCGAATCGGGTTTCTGTCTCTGTGACGATGTAACGGTTCCGGTAAAATGGCGGCCCGCTAAGAGAGGGCGACGTTTGCTGTTTGGAGGAGAAATAATGGAGCCGTAGTTGAAGTGTGTGTGGTGTAAAATGGTGGTAGTCGGGTTCTGGAGCTGGCCCGTCTGTCAGGCGGCAGTGAGAGCAGCGTTGCGCGGAAGGAGACGCTATGGGAAGctTCATCCGTCCGGCAGTCAGACCGAACGCTTGCGGATCTTCCAGTCTCTCTGTGACCGGCGTGTGACTGGAGCTGATGAGGACCTCGCGGCGTCGGGACAGGATCTCACCATCCGATTGGCTGACGGCCGAACGGTCAAAGGGTCAGCCGGTGTGACCTCACCGCTACAGATCGCCAGGAGTGAACGTGTTAAAGGTGCGCTGCTGGGCAGAGTGAACGGAGGTCTGTGGGACCTGGGGCGCCCTCTTCTGGAGGACTGTGAACTGCATCTGCTGGGCTTTGACTCGCTGGAGGGCAGGCAGgCGGTGTGGCGGACCGGAGCGTGTGTGTTAGCGAGCGTGATGGAGAATCTCTTCAGCGCTCGTGTGTGTCGAGAGGGGGTCTCTGACGCGGGCCTCTACTGTGATTATCGGCTCCAAAACAACGCTCCGTCTCTGTCGGACGTGGAGCGGAGCTGTAAGCAGATGGCAGCTGGGAAGACTCCCATCGTCAAGCTCGAGGTCACGCTACAGGACCTGAAAGAGATCTTCCAGgatgaTGCTGTCAGGCTGCAGCTGGCTGAAGAGCAGATGACGGGGAACACACTCAGTGTGTACAGgTGTGGAGACACTGTGGGGGTGTGTTCAGGTGTTCTTCTCCCACACACAGGTTTCCTGAAGGCCTTTAACATGCTGCAGGTGTCTTCTGTCACTCTATCCGGTTCAACAGAGGAGTCAGGCATCCTCAGGATGATCGGCACGGCGTTTCCCGGAGAGAAGGAGCGAGAGGAATGggagagagagcaggaggagGCCAGAAAGAGAGACCACAGGAGAATGGGAAAGGAGCAGGAGCTCTTCTTCTTTCACGATGTCAGTCCCGGCAGCTGCTTCTTCTTGCCTAAAGGAGCTCATATATACAACACGCTCACCGACTTCATAAAGGGTGAGTACAGGAGGCGGGGCTTCAGCGAGGTTGTGACCCCGACGCTGTACAGCACGTCTCTGTGGAAGCGCTCGGGTCACTGGGAGCACTACAGCGAGAACATGTTCACGGTGACCTGTGAGCCGCACACCTTCGCTCTCAAGCCCATGAACTGCCCCGCACACTGCGTGATGTTCGAGCAGCGGCCCCGTTCGTGGCGAGAGCTCCCCATCCGCTGGGCGGACTTCGGCGCGCTGCACCGCAACGAACACTCGGGAGCGCTGGGCGGCCTGACCCGAGTCCGCCGCTTCTGCCAGGACGACGCACACATCTTCTGCGCGCCTGAACAGCTGGAGGAGGAGATCACGGCGTGTTTGGACTTCTTGAGGAGCGTGTACCGTGTCTTCGGGTTCTCCTTTCACTGTCTGCTCTCCACGCGGCCCGAGCACTTTCTGGGAGAGCCCGCCCTCTGGGACGCTGCAGAGCAGCAGTTAGAGAGCAGTCTCAAGCTGTTTGAGGAGCACTGGGAGCTGAATCCCGGAGACGGAGCGTTTTACGGACCCAAGATAGACGTCCAGATCCGTGACGCTCTCGGCCGACAGCACCAGTGTGCCACGATCCAGCTGGACTTCCAGCTGCCCATCAGGTTCAACCTGCAGTACGTCGGggCTGATGGACAGATGCACAGGCCGATCATGATCCACCGGGCAGTGCTGGGGTCCCTGGAGAGGATGATCGCTATCCTGGCCGAAAACTTTGGAGGGAAAtgGCCTTTCTGGCTGTCTCCGGCGCAGGTGATGGTGCTGCCTGTGGGGGTCAGCAGCGAGGCGTACGGGCGGGAGGTGGTCTGCAGGCTGAGGGAAGCTGGCTTCGTGGCTGATATCGACAATGATGACGGAAAcaccttaaaaaagaaaatcctctCCGCGCAGCTAGAGCGCTACAATTACATGTTCGTGGTGGGAGAGAAGGAGTGCGTGAGCGGCACGGTGAGCGTGAGGACGAGGACGGGGAAGCAGCTCGGACAGAAATCCCTGCAGGAAGTGATGCGCTCGCTGAACGAGCTCAGACAGACACGCAGCAATTTGGAGGAGTTTTAGGACCACCACCACGAGATAAACACACTGACTCCTTCATTTCCTCTCAGCCTGATGTTATTTCGtgtataataacataataaataacttttactaTTCA

Function

NR:

description
threonine--tRNA ligase, cytoplasmic-like isoform X1

GO: NA

KEGG:

id description
K01868 TARS, thrS; threonyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260033.1 True 2395 mRNA 0.58 18 6248919 6261997

Neighbor

gene id symbol gene type direction distance location
celf3b LOC107559029,LOC107713913,LOC107689166 coding downstream 348702 5877048 ~ 5900217 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding downstream 375861 5853476 ~ 5873058 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding downstream 398705 5834157 ~ 5850214 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding downstream 426069 5820991 ~ 5822850 (-)
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding downstream 675119 5571501 ~ 5573800 (-)
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding upstream 1507 6263504 ~ 6279577 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding upstream 299853 6561850 ~ 6566189 (-)
LOC122360792 NA coding upstream 388952 6650949 ~ 6690226 (-)
sox4b sox4,LOC107732138,LOC107722246 coding upstream 1126719 7388716 ~ 7392318 (-)
cables1 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 coding upstream 1666532 7928529 ~ 7951085 (-)
G110227 NA non-coding downstream 40251 6139394 ~ 6208668 (-)
G110224 NA non-coding downstream 41114 6137107 ~ 6207805 (-)
G110223 NA non-coding downstream 45030 6201389 ~ 6203889 (-)
G110199 LOC107726242,LOC107689176,LOC107713897 non-coding downstream 54285 6191010 ~ 6194634 (-)
LOC122359843 NA non-coding downstream 68411 6177403 ~ 6180508 (-)
LOC122360716 NA non-coding upstream 423503 6685500 ~ 6688903 (-)
G110307 NA non-coding upstream 827729 7089726 ~ 7091063 (-)
G110315 NA non-coding upstream 932541 7194538 ~ 7195316 (-)
LOC122360226 NA non-coding upstream 1032185 7294182 ~ 7296238 (-)
LOC122360224 NA non-coding upstream 1069151 7331148 ~ 7386350 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other downstream 64786 5902577 ~ 6184133 (-)
G110215 NA other downstream 148992 6096675 ~ 6099927 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other downstream 214142 6029208 ~ 6034777 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other downstream 430301 5817040 ~ 5818618 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other downstream 458385 5782667 ~ 5790534 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other upstream 17712 6279709 ~ 6339496 (-)
G110303 NA other upstream 819965 7081962 ~ 7083524 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other upstream 933493 7195490 ~ 7201381 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other upstream 1179901 7441898 ~ 7618596 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 1566218 7828215 ~ 7830750 (-)

Expression


Co-expression Network