trmt11 (trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854,LOC107600515)


Basic Information

Item Value
gene id trmt11
gene name trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854,LOC107600515
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21640097 ~ 21651111 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260042.1
GGATGATGTTGAGTGTAGCACACAAACATGGCTCTCCACTGTAGTCGAGCGTGCAGACAATATTTACTTCATCTTGCACATGATAACGTCGATTTTAGATTACCGGAAATAAAAGCGTTGCTGGCTCTAAGAAACCGTCCGTTTGATACACCAGAGACATTCAGCGAAAATTCTCCATTTTGGCAACTGAATGGCTTATCAGAAGACGATGTACAGAGTGTCATGTCCAGAACGGTTTGTGGAAAGTCTGCTTTTGAACTTTGGGGTCATGGAACAACAACAGACAAGCTTAGGACGTCCTTGTTGGCGTATCCAGCAGAAAACATGGCTCCATATCTACAACAAAATTCGACTTACAAGATCAATGTCTAcacttttaacaaaacattagtGTTTAAGGACAGAATCAAAAAGATTGATgCTTTAGACTTCTTGCCATTTGAAGGGACTGTCAATCTAAAGGATCCAGAacatattttctgtttgttgGAGGATTATGGCTCTGATCCTAATGACATCCCAGAGGAGCCTTTTCATATATACTTTGGGAGATGGATTGCAGATGGTCAGAGAGAATTGATTCGCTCGTACAGCGTGAAGAAGAGACATTTCATTGGGAACACTAGTATGGACGCTGGCCTTTCCTTCATTATGGCCAATCATGCCAAAGTAAAGGCTGGCGATTTGGTTTACGATCCTTTTGTTGGAACAGGTAGTCTGCTGGTAGCGTGTTCACACTTTGGGGCTTATGTATGTGGAACAGACATAGATTACAACACTATCCATGGAATAGGAAAAGCCAGCAGGAAGAATCAGAAATGGAGAGGACCGGATGAGAACATCCGAGCGAACCTGAGGCAGTATGGGACTGAGAGTCTCTACGTGGACGTTATGGTGTCTGACGCTTCCAAGCCAGTTTGGAGAAAAAATGCACAGTTTGATGCCATTGTTACAGACCCTCCATATGGCATCCGCGAGTCCACAAGGAGAACGGGATCTCATAAAGATATCATCAAACCTCCCGAGGACTTCTCTGGAGAGAGTCACGTGCCTGTTTCAATGGCGTATCACCTGAGTGATATCTTTGCTGACCTCCTGAATTTTGCGGCTCATCACTTAGTTTTGGGTGGACGTCTCGTCTATTGGCTTCCAATCTACAGACCAGAGTACTGTGAGGAGATGGTGCCTCTTCACCCCTGTTTGACTCCCATCAGCAACTgcgagcaaactctgtccagcCACACGTCACGAAGACTCATCACCATGGAGAAGACCAAGGAGCCTGAGGATTTGGACAGACTAGCGCACCTTGCTGACCCTCGCTTCACCCCATACCAGGGTCACAACTCCTTCAGAGAGAAATACTTCAGTGGTCTCACCAAGAAGAACGGAAAGGACACCAAAGCCaccccaaaaaacaaagaataaaacaaacggtttacgttatatttttatttaaatgtaattagtttttttaatttcttttaatgaaattgaACTTTTTTATCGTTTTGCAATAAAAACCCTTGTTTTA

Function

symbol description
trmt11 Predicted to enable tRNA (guanine-N2-)-methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm. Orthologous to human TRMT11 (tRNA methyltransferase 11 homolog).

NR:

description
PREDICTED: tRNA (guanine(10)-N2)-methyltransferase homolog

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15430 TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260042.1 True 1534 mRNA 0.43 13 21640097 21651111

Neighbor

gene id symbol gene type direction distance location
rspo3 rspo3,LOC107666888,LOC107713808,LOC107600514,LOC107591889 coding downstream 208290 21412868 ~ 21431807 (-)
trnas-aga_117 NA coding downstream 231072 21408944 ~ 21409025 (-)
cfap418 LOC107666820,LOC107668311,LOC107592823,LOC107600550,LOC107591919 coding downstream 231129 21405263 ~ 21408968 (-)
LOC122360424 LOC107666780,LOC107717381,LOC107600549,LOC107713810,LOC107591947,LOC107668291,LOC101885642 coding downstream 274896 21360793 ~ 21365201 (-)
nagpa nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811 coding downstream 293497 21333650 ~ 21346600 (-)
hint3 hint3 coding upstream 3208 21654319 ~ 21656720 (-)
osbpl10b osbpl10,LOC107600617,LOC107713824,LOC107551176,LOC107705753,LOC107668315 coding upstream 271851 21922962 ~ 21961491 (-)
kiaa1143 kiaa1143,zgc:77056,LOC107713807,LOC107600662,LOC107551194,LOC107679647 coding upstream 317726 21968837 ~ 21970707 (-)
zdhhc3a zdhhc3a,zdhhc3,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding upstream 321561 21972672 ~ 21982803 (-)
sybu LOC107666828,LOC107713821,LOC107705165,LOC107551189,LOC107679650 coding upstream 340163 21991274 ~ 22001056 (-)
G115098 NA non-coding downstream 250950 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 308739 21331012 ~ 21331358 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding downstream 325351 21283464 ~ 21314746 (-)
G114997 NA non-coding downstream 519513 21118149 ~ 21120584 (-)
G114947 NA non-coding downstream 804862 20781803 ~ 20835235 (-)
G115155 NA non-coding upstream 174087 21825198 ~ 21825437 (-)
G115170 NA non-coding upstream 222715 21873826 ~ 21874051 (-)
G115262 NA non-coding upstream 579129 22230240 ~ 22237066 (-)
G115335 NA non-coding upstream 1032316 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 1122655 22773766 ~ 22774032 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other downstream 25894 21605958 ~ 21614203 (-)
G115116 NA other downstream 78881 21560221 ~ 21561216 (-)
mettl6 mettl6,LOC107600537 other downstream 228325 21409959 ~ 21411772 (-)
trnae-cuc_38 NA other downstream 230066 21409960 ~ 21410031 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other downstream 261261 21375890 ~ 21378836 (-)
G115141 NA other upstream 52907 21704018 ~ 21704959 (-)
G115149 NA other upstream 150364 21801475 ~ 21803804 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other upstream 313744 21964855 ~ 21968535 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other upstream 436530 22087641 ~ 22089092 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other upstream 1240991 22892102 ~ 22901187 (-)

Expression


Co-expression Network