josd2 (josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995)


Basic Information

Item Value
gene id josd2
gene name josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13201382 ~ 13204597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260047.1
GAGACAACAACACAACTTCCGGCCGATCCTCTCAGACGAGAAACAGATAGCGTTCACTGATCCTCGTAGGTTCAGTTATCAACAGCGTGGCGGAACACTAAAGTTAGTGTCACGGTACGCCTAAGCCGCGGTGGTTTTCTTGCTGTGGATAAATCGTTGCGCCGCGGACTCTGTCTTCCAGAAGGGTGAGTATGAACGAGGGCGAGGTGTTTCATGAAAAACAGAGACTGGAGCTGTGCGCCATCCATGCCTTGAACAACGTGCTTCAAGAGAGAGTTTTTACCAAGGAGACGGCAGATGACATCTGCAAGCGACTTGCCCCACAGTGTGTGATGAATCCACACCGCTCCGTGTTGGGCACGGGAAACTATGACGTCAATGTTATCATGGCAGCCCTGCAGAGCCGGGGCCTCGCTGCTGTTTGGTGGGACAAACGCCGGTCAGTGCAGAATTTGTGCCTGGACAAAATTCAGGGCTTCATTCTGAACGTCCCATCAAGGGTGTCGCTGGGAATAGTGTCTCTCCCGCTGAGACGCAGACACTGGCTGGCGGTCCGGGACGTCAACGGACAGTTTTATAACCTAGACTCGAAATTAAAAGGGCCTGCCTGTATTGGCGGAGAAACAGAACTCAGGTCATTCCTCACTGAGCAGCTTTCTCAGGACGTGGCAGAAATGCTCCTCGTCGTCCAAAAGGAAGTAGACGACGACGGGACGTGGCTCAAAGCGGACGACACCAGGAAGTGATGAAAACCgaacattctctctctctttctctctcaatgTGGAGTAACGGCGGAGAAACGGAGAAAGAGCGGTGCGCCGAGAAACTTTTATGGAGAGCAAGCGCTGCATGAAGATGCTCGCAGTCGTCCGCAACGAAGGGAAGTCCGAGAGAATGATCTAATGCTGCTTCTTATGAAGGAGCCGTTTATCTGAAGTCACACTGGCTGAGCTTTTGGGAGACACTACTACATCTGTGCCAGCCGCGTCActctcctcttttctctctttctctcctctcagGAACTACCATCTCTCACTTTATCTCTATCTATGCACTCCACTGCTGAAGTAGATCAAAGATTTGTGTGTCTTTGTTACAACTATGCACAGAAACGGTACTTTAGAGTTCACGTATGTACGGTTCATTGCCTTTTAGACGTCAGTGCACATCTTACTATGCATAAACAAAGGAGATAAGAGATTGTAGCTCTATCTCGTGCTCACGTACTTTACTCTTTCAAGCTCTCTAGCAAGCTGCCTCATTCACATCGACTCCACCAAATGGAGGGAAAACcgaatatttgatttatttatttgaatttctacTTGGACTGTTTTCGCTCACGCTGTGCTCGTGGAGGAGCCGTTCGAAATCGTCGTTATGACTACAAacggtgttttgtttttttttttgtctggttaCTAATGTTTGTcgatttaatgttgtcatcagAGCTGGATTTTAATAtcatataaatgatatttaatcaA

Function

symbol description
josd2 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Orthologous to human JOSD2 (Josephin domain containing 2).

NR:

description
josephin-2-like

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0008152 metabolic process biological_process
GO:0008242 omega peptidase activity molecular_function

KEGG:

id description
K15235 JOSD; josephin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260047.1 True 1496 mRNA 0.48 5 13201382 13204597

Neighbor

gene id symbol gene type direction distance location
flcn flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420 coding downstream 30398 13162930 ~ 13170984 (-)
zgc:174888 LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913 coding downstream 38598 13158802 ~ 13162784 (-)
grwd1 grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021 coding downstream 43509 13152349 ~ 13157873 (-)
atg12 atg12,LOC107692547,LOC107673043 coding downstream 54968 13144049 ~ 13146414 (-)
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding downstream 57471 13136647 ~ 13143911 (-)
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding upstream 101431 13306028 ~ 13319763 (-)
cacng6b cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398 coding upstream 268878 13473475 ~ 13485710 (-)
u2af2a LOC107692567,LOC107672971,LOC107724853,LOC107598390 coding upstream 282754 13487351 ~ 13494251 (-)
epn1a epn1,LOC107672968,LOC107598387,LOC107724817,LOC107744298 coding upstream 302034 13506631 ~ 13516502 (-)
aicda aicda,LOC107549448,LOC107692585,LOC107724977,LOC107744312,LOC107598400,LOC107672983 coding upstream 341683 13546280 ~ 13548312 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding downstream 742 13187919 ~ 13200640 (-)
G112229 NA non-coding downstream 175253 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 548976 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 589388 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 711262 12489782 ~ 12490120 (-)
G112261 NA non-coding upstream 9333 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 12606 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 84608 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 226547 13431144 ~ 13434295 (-)
G112336 cacng7b,LOC107724890,LOC107549472,LOC107598394,LOC107672975,LOC106570002,LOC105902015 non-coding upstream 236073 13440670 ~ 13447178 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 822933 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1334067 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1789605 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1814389 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1914950 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 449463 13654060 ~ 13683909 (-)
G112478 NA other upstream 1029957 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1293666 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1377882 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1694585 14899182 ~ 14904907 (-)

Expression


Co-expression Network