rspo3 (rspo3,LOC107666888,LOC107713808,LOC107600514,LOC107591889)


Basic Information

Item Value
gene id rspo3
gene name rspo3,LOC107666888,LOC107713808,LOC107600514,LOC107591889
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21412868 ~ 21431807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260089.1
AGAGAGCTGAAGTCATCAGTTAGCAGACGAGCGCACGGGCTGAGAGCGCgcgagagaaagggagagataGTGAGCTGCTCAACCGTGAAACCGTGAGCTGGCGAGACTGAATGGAGAAGAGCGACGTTTCGGCGGCTGTTCAGAAATAAAGCGCCAGAGTTTCGCTGAAAGTTCCTCGAGATGCTGTGATGAGGATGACGCGAGGACCTCCTACATGTCAGGCTCAATAAATAAAGTAACCTTCGCACCTGGACGTGTCGTGCGGAATCACAGTGGGGAATACATACAGTCATTCGGGAAGACAATCCAACTTTATCGCCATGCCAATTTAATTCGATTCCCTCCTCCCCGTATTTAAGTTTTGCTTACAGTGCGCTGGATGGAGAACTAACGCTTTCATTGTTTCCATGGAATGAGTGGCTCTCTCTTTGGATACCTATCTCACATTGGCGCATATGTGGATTGCCTCCAATATGTTACTGCCGAATCGGCCCAGGTGCATTTGGGCCATTGAAAGTTCTGTTTCTCTTGCGCGCGAGCACAGCTGGGGCTTCTGCCCGGTTTAGGAATAACCTTTTGAGCATCGCACAGATCCAAGTGCGATAAGGGACATTGAAATTGACAGGACAAGCATCATTCCCCTGATTACTATGCAATTACAACTGATCTCCATTGTTTTGATCTTGCATTGTATGGAATACACAAACTGTCAGCATCACGGCTCCAGGCACCGGCTAAACAAACAGGGTTCAGGGGTGAGCTCCCAGGGATGCCAGGGAGGCTGTCAGACCTGCTCGGTTTACAATGGCTGTCTGACCTGCAAACCCAAGCTTTTTATTCACCTGGAGAGGGACGGGATGAGGCAGATCGGAGTGTGCCTGGCCTCCTGCCCTAATGGTTTCTACGGCACCCGTTCCCCCGACCGGAACGACTGCATAAAGTGTGGGTCAGAGTGCGACTCGTGCTTTAACAGGAACTTCTGCCTGCGCTGCAGAGCGGGCTCCTACTTGCACAAGGGCAAGTGCATGGAGAGCTGTCCAGATGGGCTGGTGCCCAGCGATACCAAGAAAGAGTGTGTCCCTGCATGTCCTGCAGACTGCGACTCTTGTCAGAACAGTGACGTGTGTACGAGATGTGCTTTGGGACACTTCTTGCTGCAGGGGCAATGTCATCACGTCTGCCCAGATGAGTTTGAGCCCAACGACTCGATGGAGTGCATCCCGACAGTGCACTGTGAAATGGGCGAGTGGAGCGAATGGGGCCCCTGCTCACGCTCAGGTAAAACCTGCGGCTTCAAATGGGGCGAAGAAACAAGGACCAGGAAGGTCCTGCAGAATCCCTCTCCAATGGGGAGCTCGTGCCCAGCTACTTTTGAGAAGAGGGAATGCTTtgtcaaaagaaaaagatGTAAGCCAAAAGGTCAGCGGCGCGGCGAGAAGAAAAAGCGCTTCAACCTGCAGGAGAAAGAGAACGGCGAGGCACGtcgagagaggaagagagaacgagagaaagAGACGATCGACCGAGAGCATTCAGAAAGCCGGAACAAAACAGAGCACCGTCGCCGGAGGGACCAGAGCAGAGACGCTGGAACAGTGTAGAGAGAGATGCTGCTCCTCACTGctcctctgtctttctttccccTATCAGTCCATGTCACCCCCTCACCCTCTTAACCCCTCGCCGAGGGGGTGTTGCTGCTACCTGTATAATTTAAACgtatactgtatatgcacaTGAGAGAGGGGGCGCTCGTCATCCACACCATTGCAGACATTGAGGACGCCCGTACACTTCACAGGGCACCCTTCAGCCCTGTGTGCGCCCGGACCGGTGCTGGATCTGAACTGTGTATCGTGGGGCTGGGCATGTTCGATGatctgtggatttttttttgtttagtttttttttaagggggtCCAGGTACAGCACTGTATCGTGGTTTGAATGTAGGTTTTTGAGACATTAAAGTAGACTTGTTGTATAAACGTCTTTTTTGGGGGGTGCGGGGAGGGCTGAGTAAATTAAGAATGAGCATGCTTACTGCCACCGCGGACATTTCCCGCCGCCAGAGGCTGAGAGACTGCATGCCGATTGGTGTAAATGGCTTTATTCGTACTGGATGAGCGACAACACTCTCGCTGCAACGTTTTAGTAACTTTTGTTCAGTTTTCTCCGAACAAAGTGTTGATTTGCCTGTCTGTATAAACAGGATCCAAGCTTTCCATTGAAGCCAGCTGATCAGAAATCAAAAGCACCTGTATGTCAAATAAACAATACTGAGTTTGTA
>XM_043260090.1
GCAGAGAGCTGAAGTCATCAGTTAGCAGACGAGCGCACGGGCTGAGAGCGCgcgagagaaagggagagataGTGAGCTGCTCAACCGTGAAACCGTGAGCTGGCGAGACTGAATGGAGAAGAGCGACGTTTCGGCGGCTGTTCAGAAATAAAGCGCCAGAGTTTCGCTGAAAGTTCCTCGAGATGCTGTGATGAGGATGACGCGAGGACCTCCTACATGTCAGGCTCAATAAATAAAGTAACCTTCGCACCTGGACGTGTCGTGCGGAATCACAGTGGGGAATACATACAGTCATTCGGGAAGACAATCCAACTTTATCGCCATGCCAATTTAATTCGATTCCCTCCTCCCCGTATTTAAGTTTTGCTTACAGTGCGCTGGATGGAGAACTAACGCTTTCATTGTTTCCATGGAATGAGTGGCTCTCTCTTTGGATACCTATCTCACATTGGCGCATATGTGGATTGCCTCCAATATGTTACTGCCGAATCGGCCCAGGTGCATTTGGGCCATTGAAAGTTCTGTTTCTCTTGCGCGCGAGCACAGCTGGGGCTTCTGCCCGGTTTAGGAATAACCTTTTGAGCATCGCACAGATCCAAGTGCGATAAGGGACATTGAAATTGACAGGACAAGCATCATTCCCCTGATTACTATGCAATTACAACTGATCTCCATTGTTTTGATCTTGCATTGTATGGAATACACAAACTGTCAGCATCACGGCTCCAGGCACCGGCTAAACAAACATGCTCTGAGACCGGGTCAGTCCCTTCTAAAACGCAGAGCCTTTAACCATCTGAGATTGACCTTTGTGAGACACCTGGAAGCGATTGACTTCAATCAAAGATGTACCTTGAAGTAGCCGAGGAGCACCTTCCATTTCTTTACCCCGCTGAATTTAAGGGTTCAGGGGTGAGCTCCCAGGGATGCCAGGGAGGCTGTCAGACCTGCTCGGTTTACAATGGCTGTCTGACCTGCAAACCCAAGCTTTTTATTCACCTGGAGAGGGACGGGATGAGGCAGATCGGAGTGTGCCTGGCCTCCTGCCCTAATGGTTTCTACGGCACCCGTTCCCCCGACCGGAACGACTGCATAAAGTGTGGGTCAGAGTGCGACTCGTGCTTTAACAGGAACTTCTGCCTGCGCTGCAGAGCGGGCTCCTACTTGCACAAGGGCAAGTGCATGGAGAGCTGTCCAGATGGGCTGGTGCCCAGCGATACCAAGAAAGAGTGTGTCCCTGCATGTCCTGCAGACTGCGACTCTTGTCAGAACAGTGACGTGTGTACGAGATGTGCTTTGGGACACTTCTTGCTGCAGGGGCAATGTCATCACGTCTGCCCAGATGAGTTTGAGCCCAACGACTCGATGGAGTGCATCCCGACAGTGCACTGTGAAATGGGCGAGTGGAGCGAATGGGGCCCCTGCTCACGCTCAGGTAAAACCTGCGGCTTCAAATGGGGCGAAGAAACAAGGACCAGGAAGGTCCTGCAGAATCCCTCTCCAATGGGGAGCTCGTGCCCAGCTACTTTTGAGAAGAGGGAATGCTTtgtcaaaagaaaaagatGTAAGCCAAAAGGTCAGCGGCGCGGCGAGAAGAAAAAGCGCTTCAACCTGCAGGAGAAAGAGAACGGCGAGGCACGtcgagagaggaagagagaacgagagaaagAGACGATCGACCGAGAGCATTCAGAAAGCCGGAACAAAACAGAGCACCGTCGCCGGAGGGACCAGAGCAGAGACGCTGGAACAGTGTAGAGAGAGATGCTGCTCCTCACTGctcctctgtctttctttccccTATCAGTCCATGTCACCCCCTCACCCTCTTAACCCCTCGCCGAGGGGGTGTTGCTGCTACCTGTATAATTTAAACgtatactgtatatgcacaTGAGAGAGGGGGCGCTCGTCATCCACACCATTGCAGACATTGAGGACGCCCGTACACTTCACAGGGCACCCTTCAGCCCTGTGTGCGCCCGGACCGGTGCTGGATCTGAACTGTGTATCGTGGGGCTGGGCATGTTCGATGatctgtggatttttttttgtttagtttttttttaagggggtCCAGGTACAGCACTGTATCGTGGTTTGAATGTAGGTTTTTGAGACATTAAAGTAGACTTGTTGTATAAACGTCTTTTTTGGGGGGTGCGGGGAGGGCTGAGTAAATTAAGAATGAGCATGCTTACTGCCACCGCGGACATTTCCCGCCGCCAGAGGCTGAGAGACTGCATGCCGATTGGTGTAAATGGCTTTATTCGTACTGGATGAGCGACAACACTCTCGCTGCAACGTTTTAGTAACTTTTGTTCAGTTTTCTCCGAACAAAGTGTTGATTTGCCTGTCTGTATAAACAGGATCCAAGCTTTCCATTGAAGCCAGCTGATCAGAAATCAAAAGCACCTGTATGTCAAATAAACAATACTGAGTTTGTA

Function

symbol description
rspo3 Predicted to enable heparin binding activity. Acts upstream of or within negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; negative regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation; and posterior lateral line neuromast development. Predicted to be located in extracellular region. Is expressed in several structures, including digestive system; endoderm; forebrain neural keel; nervous system; and presumptive telencephalon. Orthologous to human RSPO3 (R-spondin 3).

NR:

description
PREDICTED: R-spondin-3-like

GO:

id name namespace
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0008201 heparin binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260089.1 False 2290 mRNA 0.51 6 21412868 21431805
XM_043260090.1 True 2447 mRNA 0.51 7 21412868 21431807

Neighbor

gene id symbol gene type direction distance location
trnas-aga_117 NA coding downstream 3843 21408944 ~ 21409025 (-)
cfap418 LOC107666820,LOC107668311,LOC107592823,LOC107600550,LOC107591919 coding downstream 3900 21405263 ~ 21408968 (-)
LOC122360424 LOC107666780,LOC107717381,LOC107600549,LOC107713810,LOC107591947,LOC107668291,LOC101885642 coding downstream 47667 21360793 ~ 21365201 (-)
nagpa nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811 coding downstream 66268 21333650 ~ 21346600 (-)
tp53inp1 tp53inp1,LOC107666795,LOC107717380,LOC107600511,LOC107591975,LOC107668322 coding downstream 82877 21322911 ~ 21329991 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854,LOC107600515 coding upstream 208290 21640097 ~ 21651111 (-)
hint3 hint3 coding upstream 222512 21654319 ~ 21656720 (-)
osbpl10b osbpl10,LOC107600617,LOC107713824,LOC107551176,LOC107705753,LOC107668315 coding upstream 491155 21922962 ~ 21961491 (-)
kiaa1143 kiaa1143,zgc:77056,LOC107713807,LOC107600662,LOC107551194,LOC107679647 coding upstream 537030 21968837 ~ 21970707 (-)
zdhhc3a zdhhc3a,zdhhc3,LOC107679645,LOC107600619,LOC107666804,LOC105908916 coding upstream 540865 21972672 ~ 21982803 (-)
G115098 NA non-coding downstream 23721 21388815 ~ 21389147 (-)
G115051 NA non-coding downstream 81510 21331012 ~ 21331358 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding downstream 98122 21283464 ~ 21314746 (-)
G114997 NA non-coding downstream 292284 21118149 ~ 21120584 (-)
G114947 NA non-coding downstream 577633 20781803 ~ 20835235 (-)
G115155 NA non-coding upstream 393391 21825198 ~ 21825437 (-)
G115170 NA non-coding upstream 442019 21873826 ~ 21874051 (-)
G115262 NA non-coding upstream 798433 22230240 ~ 22237066 (-)
G115335 NA non-coding upstream 1251620 22683427 ~ 22683638 (-)
G115496 NA non-coding upstream 1341959 22773766 ~ 22774032 (-)
mettl6 mettl6,LOC107600537 other downstream 1096 21409959 ~ 21411772 (-)
trnae-cuc_38 NA other downstream 2837 21409960 ~ 21410031 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other downstream 34032 21375890 ~ 21378836 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other downstream 395763 21012607 ~ 21017105 (-)
G114901 NA other downstream 759294 20651977 ~ 20653574 (-)
G115116 NA other upstream 128414 21560221 ~ 21561216 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 174151 21605958 ~ 21614203 (-)
G115141 NA other upstream 272211 21704018 ~ 21704959 (-)
G115149 NA other upstream 369668 21801475 ~ 21803804 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other upstream 533048 21964855 ~ 21968535 (-)

Expression


Co-expression Network