irx1a (irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507)


Basic Information

Item Value
gene id irx1a
gene name irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 6561850 ~ 6566189 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260112.1
AACAGTAAAGCCAgtgtttcatttgaataattcaattcagagcatcattttgttttgttttttttttaccaaacgCACGCAGTATTAgcaatcaagaaaaaaaaagaatacagttGTTTGATCGTCAATACCTGATGAAGATCAGAGTCATCGCGAGTGTCGCTTTAATTCTCCAGCGTTTATAAGAATTACGAGCCGTTCAAATAAGTTCCGCGTGCCTATCAGTTCATTTCCCCAGTGCTGGGCAGCTGTAAAATCGTGTAGACAGGTTGTCACACTACAGTGAATGGATTCTAATGctaaacatttaacatacaATCCTCCAAACAGTGCAAAAGTGGCCCTGGCCAATGCTCTAACCACATGCGCCAACGAGGAGGAGCCTGGGACGCCAATCAAAGCATCAACTTCAAATTGTATCTGAGAGATCAGCCCAGGACCTAGGGGCAGAGACATCAGTTGGAGCTCAATTGTTGATCTGATCACATCCGACGGACTTGCTGCAAAAGAGAAGCTGAGATTTAAAGACGAGCGTTTCCCATTCTCGCTCCGCGCGGCTCGAGAGAGACCAACTCTTCCGCTTCTCGCTTTGGTGGGCTACTCGCGCTTTTTCGCCTGGTTTTGGCTCGCGACGCGGCGAAGGAGATGTCTTTCCCGCAGCTGGGTTACCCGCAGTATTTAAGCGCCTCGCAGGCGGTGTACGGAGGCGAGCGGCCGGGGGTGCTGACTGCGTCGTCCCGCGGAGGGAGCGCGGAGATCGGGGGGAGCGCGTCGGCGGCGGCCGCTGCCGTGTCCTCGGTGCTGGGCATGTACCCCTACGCGCACAACTACAGCGCCTTTCTGCCTTACACCAGCGCCGATCTGGCTCTCTTCTCGCAGATGGGCTCTCAGTATGATCTCAAAGACAGCCCCGGCGTCCACCCCGCCAGCTTCGCCGCCCACACGAGCCCTGCCTTCTACCCCTACGGTCAGTTCCAGTACGGAGACCCGGCCAGGCCCAAGAACGCCACGCGGGAGAGCACCAGCACCCTGAAGGCCTGGCTCAACGAGCACCGGAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGAAGACTGAAGAAGGAGAACAAGGTGACGTGGGGCAGAAGCAAAGAGGACGAAGACGGGAACATTTTTGGCAGCGACAACGAGGGGGACGCCGAGAAGAACGAAGACGAGGAGGAAATAGATCTGGAGAGCATCGACATCGACAAGATCGACGACAACGACGGGGACCAGAGCAACGAGGAGGACGACGAGAAGCGCGGGGAGCTCGAGGCCTTCGAGAAAGCCAAGCCCAACGCCATTTCCGGCAGCAAAGAGCCGTCGGACGGaaacaacaacgacaacaaCACCAGGGTGCTGTCGCCGGGGCGCCAGGGAGGTTTTCAGGTTCCGGTCAGCAATAAGCCCAAAATATGGTCGCTGGCAGAAACCGCGACCAGCCCCGACAGCTCGCAGAAACCCACGTCACCCTCGGTTCCCGCCACTCACCCGGCCTTCCTGCCCAGCCACGGACTGTACACGTGCCAGATCGGGAAGTTCCACAACTGGACCAACGGGGCGTTCCTGGGGCAAAACTCGCTGCTGAACGTCCGGTCGTTCCTGGGCGTCAATCAGCATCACCACAGCCACCCGACCCActcccagcagcagcagcagcagcagcagcaggccTCGGCGGTGCTGGTCTCGTCGATGGCGGCCGTGAACACCGACAAGGCGCCCGAGGACCTCAGTCCCAAACACATAGATCGGGAAAACGTCCTCAGAAACGAATCACCGACGCAAACTTTAAAGTCCTCCTTCCGTCCTCTTCACGACAGCCCCAGAAACCAGCAGGAATCGACACAGAGGGTCCTCACAGCTCTCTCCTCCGCTTGATCAAGACATTTACCCCGCTAAAGGACTTATGGCACTCATAAAGGGACAGTGAGATGTGACTCGATTCAGCGTAGCGTTCAGTTTCTCTAAAACAAACGGCCGCTGGAGCTGTACATAATGACACCTGTGATCCCTCCCTTACCCTGGGACATTGGTAGGCTGATTTTGTCTTCATGTGTCGGTGTTTTCCTTTAAGGTGACCCACATTTGTAAATAGCGAGTTGACGGAGTTTGTTCAGATCATATATTTTGTctaataaactaaatgaaattata
>XM_043260113.1
ACTCCAAGAAAACAGTAAAGCCAgtgtttcatttgaataattcaattcagagcatcattttgttttgttttttttttaccaaacgCACGCAGTATTAgcaatcaagaaaaaaaaagaatacagttGTTTGATCGTCAATACCTGATGAAGATCAGAGTCATCGCGAGTGTCGCTTTAATTCTCCAGCGTTTATAAGAATTACGAGCCGTTCAAATAAGTTCCGCGTGCCTATCAGTTCATTTCCCCAGTGCTGGGCAGCTGTAAAATCGTGTAGACAGGTTGTCACACTACAGTGAATGGATTCTAATGctaaacatttaacatacaATCCTCCAAACAGTGCAAAAGTGGCCCTGGCCAATGCTCTAACCACATGCGCCAACGAGGAGGAGCCTGGGACGCCAATCAAAGCATCAACTTCAAATTGTATCTGAGAGATCAGCCCAGGACCTAGGGGCAGAGACATCAGTTGGAGCTCAATTGTTGATCTGATCACATCCGACGGACTTGCTGCAAAAGAGAAGCTGAGATTTAAAGACGAGCGTTTCCCATTCTCGCTCCGCGCGGCTCGAGAGAGACCAACTCTTCCGCTTCTCGCTTTGGTGGGCTACTCGCGCTTTTTCGCCTGGTTTTGGCTCGCGACGCGGCGAAGGAGATGTCTTTCCCGCAGCTGGGTTACCCGCAGTATTTAAGCGCCTCGCAGGCGGTGTACGGAGGCGAGCGGCCGGGGGTGCTGACTGCGTCGTCCCGCGGAGGGAGCGCGGAGATCGGGGGGAGCGCGTCGGCGGCGGCCGCTGCCGTGTCCTCGGTGCTGGGCATGTACCCCTACGCGCACAACTACAGCGCCTTTCTGCCTTACACCAGCGCCGATCTGGCTCTCTTCTCGCAGATGGGCTCTCAGTATGATCTCAAAGACAGCCCCGGCGTCCACCCCGCCAGCTTCGCCGCCCACACGAGCCCTGCCTTCTACCCCTACGGTCAGTTCCAGTACGGAGACCCGGCCAGGCCCAAGAACGCCACGCGGGAGAGCACCAGCACCCTGAAGGCCTGGCTCAACGAGCACCGGAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCTCACGCAGGTGTCCACCTGGTTCGCCAACGCCAGGAGAAGACTGAAGAAGGAGAACAAGGTGACGTGGGGCAGAAGCAAAGAGGACGAAGACGGGAACATTTTTGGCAGCGACAACGAGGGGGACGCCGAGAAGAACGAAGACGAGGAGGAAATAGATCTGGAGAGCATCGACATCGACAAGATCGACGACAACGACGGGGACCAGAGCAACGAGGAGGACGACGAGAAGCGCGGGGAGCTCGAGGCCTTCGAGAAAGCCAAGCCCAACGCCATTTCCGGCAGCAAAGAGCCGTCGGACGGaaacaacaacgacaacaaCACCAGGGTGCTGTCGCCGGGGCGCCAGGGAGGTTTTCAGGTTCCGGTCAGCAATAAGCCCAAAATATGGTCGCTGGCAGAAACCGCGACCAGCCCCGACAGCTCGCAGAAACCCACGTCACCCTCGGTTCCCGCCACTCACCCGGCCTTCCTGCCCAGCCACGGACTGTACACGTGCCAGATCGGGAAGTTCCACAACTGGACCAACGGGGCGTTCCTGGGGCAAAACTCGCTGCTGAACGTCCGGTCGTTCCTGGGCGTCAATCAGCATCACCACAGCCACCCGACCCActcccagcagcagcagcagcagcagcagcaggccTCGGCGGTGCTGGTCTCGTCGATGGCGGCCGTGAACACCGACAAGGCGCCCGAGGACCTCAGTCCCAAACACATAGCCCCAGAAACCAGCAGGAATCGACACAGAGGGTCCTCACAGCTCTCTCCTCCGCTTGATCAAGACATTTACCCCGCTAAAGGACTTATGGCACTCATAAAGGGACAGTGAGATGTGACTCGATTCAGCGTAGCGTTCAGTTTCTCTAAAACAAACGGCCGCTGGAGCTGTACATAATGACACCTGTGATCCCTCCCTTACCCTGGGACATTGGTAGGCTGATTTTGTCTTCATGTGTCGGTGTTTTCCTTTAAGGTGACCCACATTTGTAAATAGCGAGTTGACGGAGTTTGTTCAGATCATATATTTTGTctaataaactaaatgaaattata

Function

symbol description
irx1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within central nervous system neuron differentiation; embryonic pectoral fin morphogenesis; and sensory organ development. Predicted to be active in nucleus. Is expressed in several structures, including liver; nervous system; neural plate; pericardial region; and pleuroperitoneal region. Orthologous to human IRX1 (iroquois homeobox 1).

NR:

description
iroquois-class homeodomain protein irx-1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24889 IRX; iroquois-class homeodomain protein IRX

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260112.1 True 2244 mRNA 0.55 4 6561850 6566179
XM_043260113.1 False 2181 mRNA 0.55 3 6561850 6566189

Neighbor

gene id symbol gene type direction distance location
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding downstream 282273 6263504 ~ 6279577 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding downstream 299853 6248919 ~ 6261997 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding downstream 661633 5877048 ~ 5900217 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding downstream 688792 5853476 ~ 5873058 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding downstream 711636 5834157 ~ 5850214 (-)
LOC122360792 NA coding upstream 84760 6650949 ~ 6690226 (-)
sox4b sox4,LOC107732138,LOC107722246 coding upstream 822527 7388716 ~ 7392318 (-)
cables1 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 coding upstream 1362340 7928529 ~ 7951085 (-)
gata6 gata6,LOC107681823,LOC107708510,LOC107747517,LOC107691181 coding upstream 1411440 7977629 ~ 7984289 (-)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 1439529 8005718 ~ 8053185 (-)
G110227 NA non-coding downstream 353182 6139394 ~ 6208668 (-)
G110224 NA non-coding downstream 354045 6137107 ~ 6207805 (-)
G110223 NA non-coding downstream 357961 6201389 ~ 6203889 (-)
G110199 LOC107726242,LOC107689176,LOC107713897 non-coding downstream 367216 6191010 ~ 6194634 (-)
LOC122359843 NA non-coding downstream 381342 6177403 ~ 6180508 (-)
LOC122360716 NA non-coding upstream 119311 6685500 ~ 6688903 (-)
G110307 NA non-coding upstream 523537 7089726 ~ 7091063 (-)
G110315 NA non-coding upstream 628349 7194538 ~ 7195316 (-)
LOC122360226 NA non-coding upstream 727993 7294182 ~ 7296238 (-)
LOC122360224 NA non-coding upstream 764959 7331148 ~ 7386350 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other downstream 222354 6279709 ~ 6339496 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other downstream 377717 5902577 ~ 6184133 (-)
G110215 NA other downstream 461923 6096675 ~ 6099927 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other downstream 527073 6029208 ~ 6034777 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other downstream 743232 5817040 ~ 5818618 (-)
G110303 NA other upstream 515773 7081962 ~ 7083524 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other upstream 629301 7195490 ~ 7201381 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other upstream 875709 7441898 ~ 7618596 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 1262026 7828215 ~ 7830750 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other upstream 1516711 8082900 ~ 8092455 (-)

Expression


Co-expression Network