LOC122359907 (LOC107594909)


Basic Information

Item Value
gene id LOC122359907
gene name LOC107594909
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14908620 ~ 14913646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260128.1
GCAGGGGAGTAGATTCGTCTCAACAATGGGTGTGCATGTCTCCAGTTTCTCTTGCTTCTGGTGGAAATTTATACTGGTTTTATGTGTCTGCAATGTCGTTTTTACTATTATACATAACCGCTGCTTAACCATTGAGGAGCATCTCATCCGAGACATGCCCAAGACTCCAAAGTGCAACCATTATCCAGGAATGGGTCTATATGCCGACTGCAATATTATAGACCTGCGCACTGACCTGTCGGAGGTAGGCCTTCAAGTTAGATCCCTTTGTATCGTTGGTGATATTTCAAGCATTCCTGCTGATGCCTTTTCACGCTTACCTTCTTTGGAGGTCCTTCAAATAGACGGCATGAGATTGGAGAGGGTTCAATCTGGTGCCTTTTCAGGACTCCCCAATCTGAAGCATTTGTCGGTGCTTTTCAGTGATGAAATATGTAGGTCCGTCACCATAGAATCTCTCGCATTTGCTGGTTTGTCCAGTTTAGAGGATTTGACACTGATAGGTCTTAAGTTAGTCAATGTATCAAGCGATATGTTTGATCCGTTGATTAGCGTAACCAGACTAGAGATAAGAAGAACTTGTGCACAGGACCTTGGTGATATTTTCTGTTATCTTCCACATGGAATGTCCCATCTGAAGAACCTGAGTGTGATAGACAGTGGGATTTCAACAATTGAGACCGAAGGATGTCCAGTGGGATCAAAGACATGGCCCGTGACTGTCCTCTCTGGTATTCAAAACCTTTATATAACAGGGAACAGTATCAAAGTCATTAAAGCAAACTCCCTAGTTGCATTTCAGAATCTCTCCAGCCTTTTTTTGGAGTACAAAGGTGAGTCGCTAGATAGTATTTGGCAGTCTGGGATTGGAAAAGTCAACGAGTTCAGTTTGACAggaactgtattaaaaaaatattcaacaaaCTTCAAAGATTTGTGTCATCTGGTCACCAACCTTCATATTCAGTCCCTCAGCTTGATTTTTACTTCAATTGACAGATTGGCTGCAGAGGAATTAAAAGAGTGTGGGACAACTCTGACAAAGTTACTCATCAGCAAGTCAAAAATAGACCAACTGGACTTCAGTTTCTGGACAGGTAACACAGGTTTTCAAGCACTGCAAATGTCCTATATGAATCTGAAAGATGTTCCCTTCTGTGCTGCTGTGAATGGAACTGTCTGGTCCTTAACCTTGCTGGACCTCACCAGAAACTCAATTTCAGAAGTTGGCGGAGACCAGTTTGTTTGCATGCCTTTTCTCGAGCAGCTCTTTCTCAGCAATAACATCATACAAAACCTACAGTTGCATGCATTTCGTGGTGTGAGTCGCCTCAAAATTCTCAAAATCGATGGGAATAAGATCTTACAGCTCTCTGCAAAGGATTTCAGATCTCTTAAGGCTTTGGAGGTCCTGCATATCAATAATAACATCATTAAAACTATTGAGGACGGAACATTTCAGGATCAACAGGAGCTTCGTGAGCTGACACTGGGTAAGCTGGAGTTCATTTATGAGTTGCATCTAAATAGGATTTTTAACGGATTTCCACTGAAAATACAGCGACTAAGTATTGATGCACATTATGGAACTACTTTTTTTCTGGGACGTACATCACAACCTGAGGGAACGTTTGTTTTGGAGCTAAATGGAGACAGACTGGATTTTGCAGACTGTAATACTACTGTTTTTACAGCAGTTCGAGAGCTGAGTGTGATTTGCACTTATTTCATATGCAAAAATTTCTTCATGGCACCTTATTTTCCAAACCTGGAATCTTTTGAGATCTCAGGAGGAGCTGAACGAGCGCCTCTCAGGGACACTAAAATCAGTACTTTGCACCATCTCAAGCGCCTCAAGCTCATCAACCTGAGCTTTTCTAACTATACAGATGCCGGAAGCATCTTCTGGAACCTAACAAGCCTCCAGACTCTTGTGCTGGTAAACTGCCATTTGAACTTCCTGACTCAGAGTATGTTTAAAGACCTGACGTCTCTGCAGCTGCTACGTCTGTACAGTGATAGTCCTCTGGTCTTGACTGATGGTGTGTTCGAAGTTCTTCCAGCTCTAAATGCATTTGTTCTCGATAAAGTGGATTTCCAGTGCAGTTGTGAAAATGGTTGGATCCTTGATTGGGCGGAAAGCACTGAGAAAGTGCAGGTGATCTACTTGAAGAAGCAGATGTGTGTCTGGCGCTATCAGAAGCTCAACTTCTTGGCGACCATGGAGAAGCTGTGTCAGACTGACCAACAGTACATTTGCTATGTAGCCACAGCCGCAAGTGCTTGTCTTCTGCTGTCGGCAGCCATTGGATATCGCTTTGCTCGCTGGCCTTCTGTAGTCCTCTTCTTCCGCCTGAgaggatggctggagaggaagTTTGGTAGGCAGTGGCACAGGAGGAGGAGACGAGTCGAGGGTGCTGATGGGGAGATACAGGAGATGCGGTATGATGCCTTTGTGTCTTTCTGTAGCCTAGATGAGGCCTGGGTCCTGGGGGAGATGACTCCTCGGCTGGAGGAAGAAGGGAACCCGAGACTGAGGCTGTGTCTGCACAACAGAGACTTTGAGGTGGGTAAAGATATCATGGACAACATCACTGAGAGCATCTACAGCAGTGAGTGCACAGTTTGTTTGATCAGTCGGCGGTATCTGCGCAGTGACTGGTGCGGTCTGGAGATGCGTGTTGCCACACACCGGCAGCTGGAGGAGCAAAAACACCGTctcatcctcatcttcctcGAACACATCTCTCCTTTTGAGATTTCTGCTTTCCATCGTTTGGCCAGACTGGTGAGATCACGCACATATCTGGACTGGCCAGAGGATGAAGGTGACAGAGTACATTTCTGGGATCGTCTGAGGAGGAACATCGCAGAGGAACACAAGCAAGCTTCTTGAATCCACACCTGGTGCGTTCCTGCTAAAACACAACGACAACTGTGATAAAACAAATGatacaatttcattttttaaaaagacttacATTAAGATATGTGATGCTTATCAGTGTTAATTCATTCGTGTTCATGCTTTTTTAtgttcatcttttttaaaaattgtcttTGTGTAATTTCTTATTCCAAATTGTACTGTACTCATCACATGATTATAGTAATGTCTAGCAATGTCTGAACATATATTCCCATTATGCTACACAGAGTgcaaatttatttgaatataaacacTCAAGTATAaaagcacacatatatttagttccctttataaatgttattttttccgCTTTTTGCTGTACCTTTTgcgtttttaaatcattatgtgGACAAACAGAACTATACAGTGCATCCGGAAAGTATTCATAGCGcttcactttttc
>XR_006252733.1
GCAGGGGAGTAGATTCGTCTCAACAATGGGTGTGCATGTCTCCAGTTTCTCTTGCTTCTGGTGGAAATTTATACTGGTTTTATGTGTCTGCAATGTCGTTTTTACTATTATACATAACCGCTGCTTAACCATTGAGGAGCATCTCATCCGAGACATGCCCAAGACTCCAAAGTGCAACCATTATCCAGGAATGGGTCTATATGCCGACTGCAATATTATAGACCTGCGCACTGACCTGTCGGAGGTAGGCCTTCAAGTTAGATCCCTTTGTATCGTTGGTGATATTTCAAGCATTCCTGCTGATGCCTTTTCACGCTTACCTTCTTTGGAGGTCCTTCAAATAGACGGCATGAGATTGGAGAGGGTTCAATCTGGTGCCTTTTCAGGACTCCCCAATCTGAAGCATTTGTCGGTGCTTTTCAGTGATGAAATATGTAGGTCCGTCACCATAGAATCTCTCGCATTTGCTGGTTTGTCCAGTTTAGAGGATTTGACACTGATAGGTCTTAAGTTAGTCAATGTATCAAGCGATATGTTTGATCCGTTGATTAGCGTAACCAGACTAGAGATAAGAAGAACTTGTGCACAGGACCTTGGTGATATTTTCTGTTATCTTCCACATGGAATGTCCCATCTGAAGAACCTGAGTGTGATAGACAGTGGGATTTCAACAATTGAGACCGAAGGATGTCCAGTGGGATCAAAGACATGGCCCGTGACTGTCCTCTCTGGTATTCAAAACCTTTATATAACAGGGAACAGTATCAAAGTCATTAAAGCAAACTCCCTAGTTGCATTTCAGAATCTCTCCAGCCTTTTTTTGGAGTACAAAGGTGAGTCGCTAGATAGTATTTGGCAGTCTGGGATTGGAAAAGTCAACGAGTTCAGTTTGACAggaactgtattaaaaaaatattcaacaaaCTTCAAAGATTTGTGTCATCTGGTCACCAACCTTCATATTCAGTCCCTCAGCTTGATTTTTACTTCAATTGACAGATTGGCTGCAGAGGAATTAAAAGAGTGTGGGACAACTCTGACAAAGTTACTCATCAGCAAGTCAAAAATAGACCAACTGGACTTCAGTTTCTGGACAGGTAACACAGGTTTTCAAGCACTGCAAATGTCCTATATGAATCTGAAAGATGTTCCCTTCTGTGCTGCTGTGAATGGAACTGTCTGGTCCTTAACCTTGCTGGACCTCACCAGAAACTCAATTTCAGAAGTTGGCGGAGACCAGTTTGTTTGCATGCCTTTTCTCGAGCAGCTCTTTCTCAGCAATAACATCATACAAAACCTACAGTTGCATGCATTTCGTGGTGTGAGTCGCCTCAAAATTCTCAAAATCGATGGGAATAAGATCTTACAGCTCTCTGCAAAGGATTTCAGATCTCTTAAGGCTTTGGAGGTCCTGCATATCAATAATAACATCATTAAAACTATTGAGGACGGAACATTTCAGGATCAACAGGAGCTTCGTGAGCTGACACTGGGTAAGCTGGAGTTCATTTATGAGTTGCATCTAAATAGGATTTTTAACGGATTTCCACTGAAAATACAGCGACTAAGTATTGATGCACATTATGGAACTACTTTTTTTCTGGGACGTACATCACAACCTGAGGGAACGTTTGTTTTGGAGCTAAATGGAGACAGACTGGATTTTGCAGACTGTAATACTACTGTTTTTACAGCAGTTCGAGAGCTGAGTGTGATTTGCACTTATTTCATATGCAAAAATTTCTTCATGGCACCTTATTTTCCAAACCTGGAATCTTTTGAGATCTCAGGAGGAGCTGAACGAGCGCCTCTCAGGGACACTAAAATCAGTACTTTGCACCATCTCAAGCGCCTCAAGCTCATCAACCTGAGCTTTTCTAACTATACAGATGCCGGAAGCATCTTCTGGAACCTAACAAGCCTCCAGACTCTTGTGCTGGTAAACTGCCATTTGAACTTCCTGACTCAGAGTATGTTTAAAGACCTGACGTCTCTGCAGCTGCTACGTCTGTACAGTGATAGTCCTCTGGTCTTGACTGATGGTGTGTTCGAAGTTCTTCCAGCTCTAAATGCATTTGTTCTCGATAAAGTGGATTTCCAGTGCAGTTGTGAAAATGGTTGGATCCTTGATTGGGCGGAAAGCACTGAGAAAGTGCAGGTGATCTACTTGAAGAAGCAGATGTGTGTCTGGCGCTATCAGAAGCTCAACTTCTTGGCGACCATGGAGAAGCTGTGTCAGACTGACCAACAGTACATTTGCTATGTAGCCACAGCCGCAAGTGCTTGTCTTCTGCTGTCGGCAGCCATTGGATATCGCTTTGCTCGCTGGCCTTCTGTAGTCCTCTTCTTCCGCCTGAgaggatggctggagaggaagTTTGGTAGGCAGTGGCACAGGAGGAGGAGACGAGTCGAGGGTGCTGATGGGGAGATACAGGAGATGCGGTATGATGCCTTTGTGTCTTTCTGTAGCCTAGATGAGGCCTGGGTCCTGGGGGAGATGACTCCTCGGCTGGAGGAAGAAGGGAACCCGAGACTGAGGCTGTGTCTGCACAACAGAGACTTTGAGTGACTGGTGCGGTCTGGAGATGCGTGTTGCCACACACCGGCAGCTGGAGGAGCAAAAACACCGTctcatcctcatcttcctcGAACACATCTCTCCTTTTGAGATTTCTGCTTTCCATCGTTTGGCCAGACTGG

Function

NR:

description
PREDICTED: toll-like receptor 12 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260128.1 True 3335 mRNA 0.43 4 14908620 14913646
XR_006252733.1 False 2703 transcript 0.45 3 14909325 14913646

Neighbor

gene id symbol gene type direction distance location
s100t LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416 coding downstream 9573 14896221 ~ 14899047 (-)
LOC122360979 LOC107673736,LOC107714679,LOC107723515,LOC107677031,LOC107582064,LOC107596123,LOC561423 coding downstream 161995 14727085 ~ 14746625 (-)
LOC122360089 NA coding downstream 189040 14717064 ~ 14719580 (-)
tuft1a LOC107582063,LOC107723549,LOC107714678,LOC107673742,LOC107594884 coding downstream 193654 14701898 ~ 14714966 (-)
si:dkey-92i15.4 LOC107714676,LOC107673754,LOC107594846,LOC107577098 coding downstream 211532 14687731 ~ 14697088 (-)
pbxip1b LOC107714683,LOC107673634 coding upstream 302 14913948 ~ 14924517 (-)
LOC122361105 LOC107582131 coding upstream 12646 14926292 ~ 14926896 (-)
shc1 shc1,LOC107714692,LOC107677023,LOC107723450 coding upstream 13391 14927037 ~ 14957235 (-)
si:dkey-247k7.2 NA coding upstream 233378 15147024 ~ 15150068 (-)
trim46a trim46,trim46a,LOC107714687,LOC107723477,LOC107582073,LOC107595016 coding upstream 238098 15151744 ~ 15163625 (-)
G113034 NA non-coding downstream 16225 14892040 ~ 14892395 (-)
G112686 NA non-coding downstream 193129 14715216 ~ 14715491 (-)
G112659 NA non-coding downstream 254470 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding downstream 270288 14633214 ~ 14638332 (-)
G112612 NA non-coding downstream 580417 14327952 ~ 14328203 (-)
G113039 NA non-coding upstream 32949 14946595 ~ 14947384 (-)
G113073 NA non-coding upstream 197187 15110833 ~ 15197354 (-)
G113090 NA non-coding upstream 251351 15164997 ~ 15165440 (-)
G113092 s100a10b,LOC107714718,LOC107595024,LOC105891828 non-coding upstream 254727 15168373 ~ 15170070 (-)
G113125 NA non-coding upstream 394219 15307865 ~ 15308418 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other downstream 3713 14899182 ~ 14904907 (-)
LOC122359961 riiad1 other downstream 320751 14582479 ~ 14587869 (-)
dicp3.3 NA other downstream 405484 14498263 ~ 14503136 (-)
G112478 NA other downstream 607001 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 1224711 13654060 ~ 13683909 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 56895 14970541 ~ 15015462 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 388228 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 451542 15365188 ~ 15375304 (-)
rps19 rps19,LOC107657656,LOC103354132,LOC100689943 other upstream 554834 15468480 ~ 15496413 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other upstream 746106 15659752 ~ 15672151 (-)

Expression


Co-expression Network