tuft1a (LOC107582063,LOC107723549,LOC107714678,LOC107673742,LOC107594884)


Basic Information

Item Value
gene id tuft1a
gene name LOC107582063,LOC107723549,LOC107714678,LOC107673742,LOC107594884
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14701898 ~ 14714966 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260202.1
tatttattattcagcgTGACCGACGATAtcagaacacaacacaacacacagcaaCGACCAGCTCGCGTCCACCCTCTCATTTCACTTCATTTACTCTCTGTCGAGTTTTTATACACCGAGCTAAAATGAACCGAATGGGGAGTATGTGCACGTTTGACGAAGTCAGGTGGGATGACAGAACGAACGGGCACAGAACACTCAGACTGACTCTCCACGAGCTGAACCAGCAGCAGCCGCCCCCCACAGATAAGCCAATTGGCAGAGCCTTTGCTTTGGTACAACCAACTTTTGAGAGACAACCACTGAAGTCTGATCTGATCAAGCAGTCTGAGGACCAGGGTGAGGTCATCAAGGTTTATCTGGAAGACCGGAAAGAGgcacaaaccagacatcaacAGAGTCTAAAGATGCTCTCAGAGGAAGTTTCACAAATACAGGAGGTGAGATACTGTCTGAAAAACCTCAGAGAGCAGATGGCAGCTAAAAGTCACAGGACAGAACATAAGCTGGTGTTATCTGGTCCCAGAAAAGTTAATGGCACTCATTCAGCACTGACAAAGGCCCTAAATGGTTTAGAGAGACAGGAAAGCATGGATGAGCAGGAAAAAGAGAAGATGAGGGAGGCCAGTAAACGACTGTATGCTCAGCTCCAAGAGGCAGAGAGAAAACAccaggaggagagagaaaaactcCTGGTGGAGGCCGAGCAGTATAAGCAGCAGTTATCTGAGCAGAGCGAGTATCTGAAGAGGGTTCAGCAGAGCAAAGAGCAGCAGGATCAGCAGATCGAGGACCTGCGACGTCTCATGGGCGGCATGGAGCAGGAGAGCTCCACCCTCAGAGACCAGCTCATGACCAAAGAAGCCGAGCTCCTGCAGCTGCGTGAACTGAGGGAGGAGGGCCATGCGGGGAGGGAGAGGTTAGAAGATCTGGAAAAGGAAAATGCCATTCTGAAAGAAAAGATTCACCATTTGGATGACATGCTCAAGAGTCAACAGAGAAAGCTACGGCAAATGATTGAACAGCTTCAGAACTCACGCATGGTGATTCAGGAGAGAGACCGAGTGATCAGAGAGCTGGAGGAAAAGGTGGCCATGTTGGAGGCAGAGAACAAACAGATGCGTGATCAGATGGATTACTACCTGGGGAGTCAAAGGTCAAACTCATACCTGCCATCAGAAGGCAATGCTCAGATCGTGTACAGCAAACCACTGAGACCATCCACCCAGACCAACAAGAACCTGCCCTTCATCAAGGTCATTGAAATTAAATCATGAACATTACCACAGCAACACCCACAGTGAAGAAGAATAATAGCGACATAACCATCAAAGACCTTCACCAAATTACATGCCATTGCTTTAATGTCTAAAGGCCTTTTCTGCAAGATTACTAACAGTGCCGAGTTACTGTTATCGCCATTACTACACAATCTAGCTATGAATTATCCATTTAGATTTGACAGAACAGGAACTGTTAAAGAGAACATATCCATTAATATGAAGACAAATGAAGAACTCATCTTTGCGTTTGCAGAATTGTGAAGGGCTTCTAGATGGGTTGTGGTATTTATCTGAGGCTGGCCCTCTGAAGACGATGTCTTTCACTCAACGTtaatagatagacagattgTATTGCTAAACACCCTCATTGAGCTCTCCTTATCTCTCGTAATCTCCTTCGGTATTAGCTCGGCTAAACTTCAGTGGGCTTTTGAGTTCACAGAAATCACAGGTGAAAATCTGTTGTATTTAGTGTTGTACAACGGATGGGaagaattgttttaaaagaagcaatgaaggatttttgtattattattgtatctATCTGTAAAGGCAGGAAATACGTTCCGTGCTGTTGTGGCTATTTTTGCAATCATTCAGCCGATAACCGATGGTCCTGAAAGAACTTTAGGGTAGACGGTGAGTCAAGTTCATCCTGAAACAAAAACTGCaacaagtatttatttttgctctaCACGCTTTTCTCGACCAAAGAGACACAGCAGGGAGAATCCAGTGACTCACCTTCTATGAAAAACAAAGACGCCTTGTGAGTGTTTCATAAGTTTGAAAGAATGTAACACTTGTCCTCCAGTGAGCCACACCAGTTCAGACCAGTAGGGCACAGTGTGACCTCTGTCATCCAGTCCAGCCGCCGCTGCAGTACAATCTACGGTTACTCAGTTAGATATTTACAACATTCAGTAAACTGCTTTTATAACATCTAGCTTGAGAAGTGATGTGATTGGCCGGAGCACCTGCCCTCCTCAAAGTAATGTCATGTGAACCATTAATACCAGAGCAGAGATTATTTATGCTTCGTTAATTTATTTGTGGGCAGGGCTgtgttgaaaaatgcatttcatgacCATGTTTATCCACCGTCACATTTTGTAGATAGTGTGtatattttgtctttgtgtgaACTTTTAACTGTATGTGAATTTCTTAGACAAGCTTCATAttaacatctttttattttttaaataatatttttttgtagtaaaaacGAGTGGTTTGCAACGCTTTAATTAACGGCAtcttgtatatttaaataaattagtttcatGAA

Function

NR:

description
tuftelin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260202.1 True 2574 mRNA 0.43 12 14701898 14714966

Neighbor

gene id symbol gene type direction distance location
si:dkey-92i15.4 LOC107714676,LOC107673754,LOC107594846,LOC107577098 coding downstream 4810 14687731 ~ 14697088 (-)
aqp10a aqp10a,LOC107673770,LOC107714675,LOC107596410 coding downstream 13730 14682828 ~ 14688168 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674,LOC107667702 coding downstream 24140 14651573 ~ 14677758 (-)
il6r LOC107667704 coding downstream 51006 14643888 ~ 14650892 (-)
otoa otoa,LOC107700136,LOC107717411,LOC107671168 coding downstream 120656 14568314 ~ 14581242 (-)
LOC122360089 NA coding upstream 2098 14717064 ~ 14719580 (-)
LOC122360979 LOC107673736,LOC107714679,LOC107723515,LOC107677031,LOC107582064,LOC107596123,LOC561423 coding upstream 12119 14727085 ~ 14746625 (-)
s100t LOC107714712,LOC107594934,LOC107673706,LOC107677025,LOC107582066,LOC107723416 coding upstream 181255 14896221 ~ 14899047 (-)
pbxip1b LOC107714683,LOC107673634 coding upstream 198982 14913948 ~ 14924517 (-)
LOC122361105 LOC107582131 coding upstream 211326 14926292 ~ 14926896 (-)
G112659 NA non-coding downstream 47748 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding downstream 63566 14633214 ~ 14638332 (-)
G112612 NA non-coding downstream 373695 14327952 ~ 14328203 (-)
G112483 NA non-coding downstream 398363 14303124 ~ 14303535 (-)
G112479 NA non-coding downstream 405326 14292739 ~ 14296572 (-)
G112686 NA non-coding upstream 250 14715216 ~ 14715491 (-)
G113034 NA non-coding upstream 177074 14892040 ~ 14892395 (-)
G113039 NA non-coding upstream 231629 14946595 ~ 14947384 (-)
G113073 NA non-coding upstream 395867 15110833 ~ 15197354 (-)
G113090 NA non-coding upstream 450031 15164997 ~ 15165440 (-)
LOC122359961 riiad1 other downstream 114029 14582479 ~ 14587869 (-)
dicp3.3 NA other downstream 198762 14498263 ~ 14503136 (-)
G112478 NA other downstream 400279 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 1017989 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2323449 12363785 ~ 12378449 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 184216 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 193654 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 255575 14970541 ~ 15015462 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 586908 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 650222 15365188 ~ 15375304 (-)

Expression


Co-expression Network