utp11 (utp11,utp11l)


Basic Information

Item Value
gene id utp11
gene name utp11,utp11l
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 24084487 ~ 24087339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260240.1
ACTGCCGTGCTCCATCGTATCCACGTGAGTTCAGTACCACATTTGCGAGGTTGTGTGGTGTACGTACGAATTCCAGTCTAGGTTTCTTCTCTTTCAAACAATCGCAGTTGGGTTTGTTTTCAGACAAAGTAGTTACAGCCATGTCTTCTTTTCGAAAAGCCTTGAAGTCTAAACAACGAGACCACAAAGAGCGATCGCAGCTCGGTTTCAGGAAACATTTGGGACTGTTAGAGAAAAAGAAGGACTACAAACTTCGTGCAGATGACTACCACCGGAAACAGAAGACCCTTATGGCCTTGCGCAAGAAGGCCATGGATAAGAACCCTGAtgaatttcactttaaaatgatacaCAGTCAATTAAAGGATGGAGTTCACGTGATCAAACCAAAAGATGACGCGATGACAGAGGAGCAGAAGAAAGTGATGAGGACCCAGGACATCAGATATGTGGAAATGAAGCGAGTGTCGGAGATGAAGAAAATCGAAAGAATGAAATCAGAGCTCCACCTTCTTGATGttgatgagaaaaataaaaataaacatgttttttatgttgACTCAAAAAGAGAAGTGGAGGACTTTGACCTGGCCACACACCTCAACACAGTACCTGAATTGGTGGGACGAGCATATAACAGACCTACAATAGAAACCCtggaaaagaaaagcattatgGGAGCAGTGGATCCTCACAGTATAAAAAAACTTGCGAAGCAGAGAGAACTTCAGTATTTAAGGCTTTCACAGCGTATTGACAGAGAGAAGAACATGTTTGTCATTAGTCAAAAAATTCAGACTAGAAAAGATCTACAACAAgATAAGGGTAAGAAAGTCAAAGTCCGTGAGGAGAGCAAAAGTGTTCCAGCCGTCTATAGATTTGAGGCCAAGAGAAAAAGATGACATCTTTGAATCAGCACACAAAAGAGAAACTCACTCTTGTGGCCGCCAATCAGCAGTTTAATCTGTGAAGTGGACTGATTCTAAGGATTTGGCTTTCACTTCTATCACATAGTCTGTGAGGCCATTCTGGGAATCATACACATTATAAGGCAAGGagtttgtacatatttattgcAAAGTCAtttgttgctttaaaataaaggttttggatttttcttta

Function

symbol description
utp11 Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP11 (UTP11 small subunit processome component).

NR:

description
PREDICTED: probable U3 small nucleolar RNA-associated protein 11

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0019013 viral nucleocapsid cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14769 UTP11; U3 small nucleolar RNA-associated protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260240.1 True 1122 mRNA 0.41 8 24084487 24087339

Neighbor

gene id symbol gene type direction distance location
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding downstream 268698 23811951 ~ 23815789 (-)
dop1a LOC107587763,LOC107704948,LOC107597122,LOC107700746,LOC107716858 coding downstream 272812 23789106 ~ 23811675 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding downstream 296785 23752336 ~ 23787702 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding downstream 347850 23676990 ~ 23736637 (-)
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding downstream 504606 23572971 ~ 23579881 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding upstream 47544 24134883 ~ 24154422 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding upstream 109358 24196697 ~ 24198654 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding upstream 224150 24311489 ~ 24316132 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding upstream 284764 24372103 ~ 24430886 (-)
ptprub ptprub coding upstream 539255 24626594 ~ 24808670 (-)
G115939 NA non-coding downstream 6620 24077631 ~ 24077867 (-)
LOC122359981 NA non-coding downstream 27225 24044760 ~ 24057262 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding downstream 262199 23820519 ~ 23822288 (-)
G115911 NA non-coding downstream 267387 23816900 ~ 23817100 (-)
G115910 NA non-coding downstream 268330 23815897 ~ 23816157 (-)
G115954 NA non-coding upstream 100598 24187937 ~ 24188594 (-)
G116174 NA non-coding upstream 734162 24821501 ~ 24823410 (-)
G116179 rab42 non-coding upstream 746197 24833536 ~ 24833958 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding upstream 747760 24835099 ~ 24835364 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding upstream 991928 25079267 ~ 25082596 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 409142 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 474646 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 560105 23519808 ~ 23524382 (-)
G115554 NA other downstream 1150520 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 1183300 22892102 ~ 22901187 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 230143 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 277301 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 326887 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1577380 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 2292333 26379672 ~ 26384187 (-)

Expression


Co-expression Network