LOC122359999 (lamtor2,LOC107688283,LOC107592476)


Basic Information

Item Value
gene id LOC122359999
gene name lamtor2,LOC107688283,LOC107592476
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27628557 ~ 27630274 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260268.1
CATAAACCATCAGCGCGGAAGTTAGAAGTCAGCTGATGTTCTTGGTCAGCTAGAAGTTCTTGCTATAATTCCGCGgaaattttattagtattattgcCGTTTTCTATTAAATTATGTTGCGTCCTAAAGCATTAACACAAGTACTCAGTCAAGCAAACACCAGTGGCGTACAAAGCACGCTgctgTTGAATAATGAAGGCTCTCTACTGGCGTATTCTGGATATGGGGACACCGATGCAAGAGTCACTGCAGCCATTGCCAGCAATATCTGGGCGGCTTACGACAAAAACGGACACCAGGCCTTTAACGAGGACAAACTGAAATTCATCCTGATGGATTGTATGGAGGGCAGGGTGGCCATTACACGTGTGGCAAACTTGTTGCTTTGCATGTATGCCAAGGAGACAGTGGGCTTTGGGATGCTTAAAGCCAAGGCTGAAGCTTTAGTGCAGTACCTCGAGGAACCGCTAACACAAGTGGCAGCGTCGTAGGATGtgcttttgtatatttgtgtacatTGTAACAGAAACTTCTGCAGATCTCGGCCTTCATAATATATTATctatggctttatttatttgcatactcTGTGTGATTGCTATATCAAATTGCGTGGCTATTAGACCCACagtataaacatgcataaacgTTAACAATTACATCTGAACAGCATTTTCCCTTTTTATGATCTTTTCTTTACGTCTCAGGATTTTTGCAGTCAGTGATCCGGCTGTGTCTAGtgtcaaaaacatgaaatgaaataaatttctttttgtta

Function

symbol description
lamtor2 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of TOR signaling; and regulation of cell growth. Predicted to be located in late endosome. Predicted to be part of Ragulator complex. Orthologous to human LAMTOR2 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 2).

NR:

description
ragulator complex protein LAMTOR2

GO:

id name namespace
GO:0043087 regulation of GTPase activity biological_process
GO:0034613 cellular protein localization biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0016049 cell growth biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20398 LAMTOR2; ragulator complex protein LAMTOR2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260268.1 True 778 mRNA 0.42 4 27628557 27630274

Neighbor

gene id symbol gene type direction distance location
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding downstream 6926 27613773 ~ 27621631 (-)
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding downstream 69585 27538393 ~ 27558972 (-)
si:ch211-269k10.4 NA coding downstream 246768 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 370547 27242882 ~ 27258010 (-)
zdhhc11 NA coding downstream 385818 27229786 ~ 27242739 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 1492 27631766 ~ 27637531 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 54993 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 60166 27690440 ~ 27693938 (-)
tmem176l.4 NA coding upstream 266454 27896728 ~ 27900760 (-)
mex3a mex3a,LOC107592477,LOC107688221,LOC107592188,LOC107756899,LOC106605309 coding upstream 302800 27933074 ~ 27939751 (-)
G116814 NA non-coding downstream 16057 27612068 ~ 27612500 (-)
G116812 NA non-coding downstream 19592 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 36531 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 138878 27378560 ~ 27489679 (-)
G116833 NA non-coding upstream 45714 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 70852 27701126 ~ 27704934 (-)
G116835 NA non-coding upstream 76332 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 322294 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 330357 27960631 ~ 27961680 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other downstream 897 27622629 ~ 27627660 (-)
LOC122360079 NA other downstream 48691 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 267728 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 630198 26993974 ~ 26998359 (-)
G116677 NA other downstream 672723 26954220 ~ 26955834 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 77442 27707716 ~ 27804770 (-)
G116868 NA other upstream 333214 27963488 ~ 27964958 (-)

Expression


Co-expression Network