ccne2 (ccne2,LOC107717358,LOC107666792,LOC107600548)


Basic Information

Item Value
gene id ccne2
gene name ccne2,LOC107717358,LOC107666792,LOC107600548
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21315779 ~ 21321087 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260272.1
cattcgcaCTGAACACTGCGGAACAGGAGAAAAGCACACCATTTGTTTAGAAAATGTCAAGACGCAGTAGTCGCAACACATTacaagaaagaaatgaaaacgcACCAGAGCAAAATAAACCGCAGAGGAAAAGGAAAAGCGAGcagtGCAATAGAAGAGTACCATCAGCATCTAAGAAACAGCACTATGAAATTCAGAACCGGTGTTTTGAAGGCGATGTTAGTCCCAGCGTGTTAATCGAGACTCCTCAGAAGGAGGTTCATCAGGACGCCGCTAATCTTTCTGGTTTCAAGCGCTTCAGATTCAAGAACCTCTTTGTGAAACCCTCTCCGCTGCCATGCCTCAGCTGGGCCAGTTCAGATGACGTGTGGATAAAGATGCTAAACAAGGAGCTGAAATACGTTCACGACAAGGGCTTTATGCAGCAGCACCCATCCCTGCAGCCTAAAATGAGGTCCATTCTACTGGACTGGCTCATGGAGGTCAGTGAAGTTTATACTCTCCACCGGGAGACTTTTTACTTGGCTCAGGACATCTTCGATCGCTTCATGCTCACTCAAAAAGACATTGGCAAAGATCAGCTGCAGCTCATCGGCATAACCTCACTCTTCATAGCCTCAAAGATAGAGgagATTTACCCGCCGAAGCTCCAGGAGTTTGCTTACGTGACGGACGGAGCCTGCAACGAGGAGGAGATTCTTTCTAAAGAGCTTGTGATCTTGAAGGCGTTGAAGTGGGAGCTCTGTCCCGAGACGGTCATCTCGTGGTTGAAGCTCTACTCCCAAGTGGACTCTTCGAAGGACGATGCTAATTTCCTCGTTCCTCAGTTCTCGCAGGAAACCTACATCCAAATCACGCAGTTGTTGGATCTCTGCATTTTGGACGTTGATTGTTTGGATTTCCAGTACGGAGTCCTCGCTGCTGCTGCCTTTTGTCACTTTACTTCTTTTGAAACGGTCCATAAAGTATCAGGGCTCACATGGGACAGCATATCAAGCTGTGTGCGGTGGATGAACCCGTTTGCCCGAGCGGTGCGTGAATGGCCCAGGCCGCAGCTGAAGGACTTCAAAAAGGTGGCGTCAGAAAGTCGTCACAACGTACAGACCCACGTGGACTACCTGGCCATGCTGAGTGAAGCACATGACCGGCAGCAGGACAGCTTGGATAGGATGTCTCCGCTGGCTGTGGCCGGGATACTGACCCCTCCTAAAAGCACTGAGAAACCTGCTAACGCCTGACGGGTTTGAAGACAACCTTCTGTTGCTAGTCTTTATTTAATTCCATCACAGCCCAGAGATCTAAGAGACCTTCTAGACCAACACATCCAGAGACTTACAGTTGTgtgctgcatttaaatattttttttttttgttggtctgTGGGAAACCAATCCAGGCCGTAACACAACAAACATTCAGACGTTGTGTGAAACTGAGGGAAAACCTACGATTGGTTTCCCAGAGCAGTATTTGAAGCACTCAAAAGTGCCTTCCATTTTGAAGAATGGAGTAATATCTATTTTCTGAAGctagaaatgaaatgttaatgatCTCGGACTGAACCTGCTCAAGAGCTCCTGGCTACGTCGCCAGATCAGAAGTCTGCacagatgctgctgctgcttcgtGGATCATAAGTTACCATTTTATGTgatgtaaatacaatttaattttattgtgtgGCTGTGTGTGACGTGAAATGTGTGTTCTGGATGTTGGCGTTAATGTGGTCCAACGCCAACCCAGTGGTGCTAACTGCGCTTGTTAAACAGGACGAGCCTGTACAACCAGCAGAATCGTTCAGATCCTCGTGAACGTCATTCCCAAGATACTCCTGTAAGACTTGACCGTTTTCACCCCTCAGAAGTGAATTTACCAAACTGAATTTAAgaaaactgcatatttatttcatatagatagatttttcgttttaatatttgaattgcAATTTCGTTCCTCAATGCCAAAggcatatttaataatttgaggTGCTTgctatttatgaatttaaagtCTTCGTTCGTAGCATAGCTTGAATTAAATTTGACCTGGACTCGAGCCGGTGATAGCTTcattgttgatttttaaaaacagtgtaaaaaaaatgtactatgTAATGTACATAAGATGTATATGtgtacaaaataacaatttcaaGACTCTGTAATGTCATTTCCAATGTGAAGTTATTAAAACGTGAAAGAAGA
>XM_043260273.1
cattcgcaCTGAACACTGCGGAACAGGAGAAAAGCACACCATTTGTTTAGAAAATGTCAAGACGCAGTAGTCGCAACACATTacaagaaagaaatgaaaacgcACCAGAGCAAAATAAACCGCAGAGGAAAAGGAAAAGCGAGtGCAATAGAAGAGTACCATCAGCATCTAAGAAACAGCACTATGAAATTCAGAACCGGTGTTTTGAAGGCGATGTTAGTCCCAGCGTGTTAATCGAGACTCCTCAGAAGGAGGTTCATCAGGACGCCGCTAATCTTTCTGGTTTCAAGCGCTTCAGATTCAAGAACCTCTTTGTGAAACCCTCTCCGCTGCCATGCCTCAGCTGGGCCAGTTCAGATGACGTGTGGATAAAGATGCTAAACAAGGAGCTGAAATACGTTCACGACAAGGGCTTTATGCAGCAGCACCCATCCCTGCAGCCTAAAATGAGGTCCATTCTACTGGACTGGCTCATGGAGGTCAGTGAAGTTTATACTCTCCACCGGGAGACTTTTTACTTGGCTCAGGACATCTTCGATCGCTTCATGCTCACTCAAAAAGACATTGGCAAAGATCAGCTGCAGCTCATCGGCATAACCTCACTCTTCATAGCCTCAAAGATAGAGgagATTTACCCGCCGAAGCTCCAGGAGTTTGCTTACGTGACGGACGGAGCCTGCAACGAGGAGGAGATTCTTTCTAAAGAGCTTGTGATCTTGAAGGCGTTGAAGTGGGAGCTCTGTCCCGAGACGGTCATCTCGTGGTTGAAGCTCTACTCCCAAGTGGACTCTTCGAAGGACGATGCTAATTTCCTCGTTCCTCAGTTCTCGCAGGAAACCTACATCCAAATCACGCAGTTGTTGGATCTCTGCATTTTGGACGTTGATTGTTTGGATTTCCAGTACGGAGTCCTCGCTGCTGCTGCCTTTTGTCACTTTACTTCTTTTGAAACGGTCCATAAAGTATCAGGGCTCACATGGGACAGCATATCAAGCTGTGTGCGGTGGATGAACCCGTTTGCCCGAGCGGTGCGTGAATGGCCCAGGCCGCAGCTGAAGGACTTCAAAAAGGTGGCGTCAGAAAGTCGTCACAACGTACAGACCCACGTGGACTACCTGGCCATGCTGAGTGAAGCACATGACCGGCAGCAGGACAGCTTGGATAGGATGTCTCCGCTGGCTGTGGCCGGGATACTGACCCCTCCTAAAAGCACTGAGAAACCTGCTAACGCCTGACGGGTTTGAAGACAACCTTCTGTTGCTAGTCTTTATTTAATTCCATCACAGCCCAGAGATCTAAGAGACCTTCTAGACCAACACATCCAGAGACTTACAGTTGTgtgctgcatttaaatattttttttttttgttggtctgTGGGAAACCAATCCAGGCCGTAACACAACAAACATTCAGACGTTGTGTGAAACTGAGGGAAAACCTACGATTGGTTTCCCAGAGCAGTATTTGAAGCACTCAAAAGTGCCTTCCATTTTGAAGAATGGAGTAATATCTATTTTCTGAAGctagaaatgaaatgttaatgatCTCGGACTGAACCTGCTCAAGAGCTCCTGGCTACGTCGCCAGATCAGAAGTCTGCacagatgctgctgctgcttcgtGGATCATAAGTTACCATTTTATGTgatgtaaatacaatttaattttattgtgtgGCTGTGTGTGACGTGAAATGTGTGTTCTGGATGTTGGCGTTAATGTGGTCCAACGCCAACCCAGTGGTGCTAACTGCGCTTGTTAAACAGGACGAGCCTGTACAACCAGCAGAATCGTTCAGATCCTCGTGAACGTCATTCCCAAGATACTCCTGTAAGACTTGACCGTTTTCACCCCTCAGAAGTGAATTTACCAAACTGAATTTAAgaaaactgcatatttatttcatatagatagatttttcgttttaatatttgaattgcAATTTCGTTCCTCAATGCCAAAggcatatttaataatttgaggTGCTTgctatttatgaatttaaagtCTTCGTTCGTAGCATAGCTTGAATTAAATTTGACCTGGACTCGAGCCGGTGATAGCTTcattgttgatttttaaaaacagtgtaaaaaaaatgtactatgTAATGTACATAAGATGTATATGtgtacaaaataacaatttcaaGACTCTGTAATGTCATTTCCAATGTGAAGTTATTAAAACGTGAAAGAAGA

Function

symbol description
ccne2 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in G1/S transition of mitotic cell cycle and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin E1-CDK2 complex and cyclin E2-CDK2 complex. Predicted to be active in centrosome; cytoplasm; and nucleus. Is expressed in brain; digestive system; head; and proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma. Orthologous to human CCNE2 (cyclin E2).

NR:

description
PREDICTED: G1/S-specific cyclin-E2-like

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06626 CCNE; G1/S-specific cyclin-E1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260272.1 True 2206 mRNA 0.44 11 21315779 21321087
XM_043260273.1 False 2203 mRNA 0.44 11 21315779 21321087

Neighbor

gene id symbol gene type direction distance location
LOC122361118 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 coding downstream 146375 21167981 ~ 21169404 (-)
dek dek,LOC107600508,LOC107717375,LOC107592846,LOC107666821 coding downstream 169702 21139170 ~ 21146077 (-)
LOC122360614 scap,LOC107600505,LOC107717374,LOC107591983,LOC107668298,LOC107713836,LOC107666822 coding downstream 177298 21120769 ~ 21138481 (-)
LOC122360714 NA coding downstream 210562 21102727 ~ 21105217 (-)
LOC122360412 nek11,LOC107666729 coding downstream 213311 21056300 ~ 21102468 (-)
tp53inp1 tp53inp1,LOC107666795,LOC107717380,LOC107600511,LOC107591975,LOC107668322 coding upstream 1824 21322911 ~ 21329991 (-)
nagpa nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811 coding upstream 12563 21333650 ~ 21346600 (-)
LOC122360424 LOC107666780,LOC107717381,LOC107600549,LOC107713810,LOC107591947,LOC107668291,LOC101885642 coding upstream 39706 21360793 ~ 21365201 (-)
cfap418 LOC107666820,LOC107668311,LOC107592823,LOC107600550,LOC107591919 coding upstream 84176 21405263 ~ 21408968 (-)
trnas-aga_117 NA coding upstream 87857 21408944 ~ 21409025 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding downstream 1033 21283464 ~ 21314746 (-)
G114997 NA non-coding downstream 195195 21118149 ~ 21120584 (-)
G114947 NA non-coding downstream 480544 20781803 ~ 20835235 (-)
G114943 NA non-coding downstream 546692 20768744 ~ 20769087 (-)
G114924 NA non-coding downstream 590108 20724171 ~ 20725671 (-)
G115051 NA non-coding upstream 9925 21331012 ~ 21331358 (-)
G115098 NA non-coding upstream 67728 21388815 ~ 21389147 (-)
G115155 NA non-coding upstream 504111 21825198 ~ 21825437 (-)
G115170 NA non-coding upstream 552739 21873826 ~ 21874051 (-)
G115262 NA non-coding upstream 909153 22230240 ~ 22237066 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other downstream 298674 21012607 ~ 21017105 (-)
G114901 NA other downstream 662205 20651977 ~ 20653574 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other downstream 664842 20636125 ~ 20650937 (-)
G114793 NA other downstream 863329 20441965 ~ 20452450 (-)
G114715 NA other downstream 1138021 20166795 ~ 20177758 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other upstream 54803 21375890 ~ 21378836 (-)
mettl6 mettl6,LOC107600537 other upstream 88872 21409959 ~ 21411772 (-)
trnae-cuc_38 NA other upstream 88873 21409960 ~ 21410031 (-)
G115116 NA other upstream 239134 21560221 ~ 21561216 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 284871 21605958 ~ 21614203 (-)

Expression


Co-expression Network