scrt1b (scrt1,scrt1b,LOC107672081,LOC107741724,LOC107587804,LOC107724802)


Basic Information

Item Value
gene id scrt1b
gene name scrt1,scrt1b,LOC107672081,LOC107741724,LOC107587804,LOC107724802
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 18459745 ~ 18463326 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260321.1
ACATCAAACCGACCCCGCGCGAGCAGAGACGGCAGCGgacacttctctctctctctcttctctttctctccctctctctctttttctccccgCTTTCACATTAACAAGCGCTCCTCCGGAAACGTGCTCGCATTTAAAGCTGCCCATTTTTGGAGCGCATCCATTTGGGTCTGAGCGCACTCTGACACGCGGCTCCTGGAGGCggatctgctgctgctgctgctgctgtccaGTGCTGAAGTTGCATTTCGCCTGTGCGGAACGGCTTGCGCACAGCTGAAGCTCCGGAGCTTCCGCGTCTTTCCCCCCGCTCAGGTGTTTGACTTTCAACCCTGCAGGACCAACTCTTTTATTGTGCGGTGGATAAAGCGAGGGTATCGTGCTGGAAGAGGCTTTCCGCTCTGCGCTCTAAACATGCCAAGGTCTTTTTTGGTGAAAAAGGTGAAGCTAGATGATTTCTCATCCACTGAACTTGAGAGCGCGTACGGCAGGTCCAGGACCGATCTTAGCTTTCGGATACACGACAAAGGCTACATCAGTGACTACATCACCCCGGCCGTTTATGATGGAGAAAGCGACGGTGGCACTAAAGTACCTTCTCCAGGACCGATTTACGACAGTAACCACAGCGACTACGGGGCACCCGACTCGGACCAGCCCGACAGCCCGCAGTCTGAGATCACATCCGGATACATCAACGGCGACAACGCGGTGAGCGAAGGTTACGCTGTGGATGCGTTCTTCATCACGGACGGCAGGTCCCGTCGGAAAGTGCTCAGCGGCTCACGGACCCTCCAGCGGCACACGTGCAACGAATGTGGCAAAACCTACGCGACGTCTTCCAACCTGAGCAGGCACAAACAGACGCACCGGAGCCTGGACAGCAAGATGGCCAAAAAGTGCCCGACATGTGGGAAAGTCTACGTGTCCATGCCAGCCCTGGCCATGCACCTGCTTACCCACGACCTCAAGCACAAGTGTGACATATGTGGGAAAGCATTCAGCAGACCTTGGCTACTGCAGGGCCACATGCGTTCTCACACGGGCGAGAAGCCCTTTGGATGTGCACACTGTGGAAAAGCGTTCGCCGACCGTTCCAACCTGCGGGCGCACATGCAGACCCACTCCGCGTTTAAGCATTTCAAATGCAAGCGATGCAACAAAACTTTCGCGCTCAAGTCCTACCTGAACAAGCACTACGAGTCGGCGTGCTTTAAAGGCGCGTTCTCGCCGCTCGCGTCCGTCGAGGCGTGACTTCCGGTCTGTTAGCGCTCACTCCCCCGTCACGTGTTAGGATGATTACGCTATCTTTACCCAGTTATGTCTCACAATCAAAATGAAACCCAGTAATAGCAcaattttctctattttttttttctctcgcaaAGTTGACCTTAAAGGAATATGGAACCTTCGCATGCACTTCAGCACCCATGTCCTCAAATGACGTTCAGACAATTCACCTCGGCGCTGCGCAGTACTTGACTATGACTTCCGTCGAGTGAAGGTTTGAGTGACACCATGTtcctcattaaaataaaactcttttgtATTGTCAGTGGATATTATCATACTGCTGCAAGTGGCCCAAACGTATTCACAATCGAGGTAAACcggtattatttatttattagtttttatatatttatttttttgtttgtctgtttttattacttCATCTAGGGTGTATGATTCTCTACGATGCACTGAAAGTGTGAttgtcatgtatttatttatttacctttttctttctcaatAACGTTGCCTTTTGGGTTACGCCAGTCTTATTAACATGCCAAAGCATTTAGATCCAtggtaataattttaaaacgttttggtttgttagtttttttatttgatgattatttttttgtatacctacttaatgcatgcaaaaagaaaagaaaacaaatctatGCCAATACCACAAAGCTTATAATTTTGCCAAAATGTAGAGATAGTATCAGGGGGCAATATTTCTAGGGGTTCTCATAAGaatataaaaagcaataatCATAATGCATGGTATTTTTGAAAGTAATAAAGTATTACCTATAGCAGTTTTTTCTAAATCAGGTACGTTTTGATCCAATActcttaataaacatttaaaaataccacATCAGGGAAAATGCCAATGTAGAGTTTAGTGAGACTAAATCCATAAGTCGAAACCATCTTTCTTTGCTCTCTGCTTATGCACTGCCTGCCTCGAATTTAAACGTAGATTTAGGATGTAGGCCCAAAGTGCTGTAACTCCACTCTAAGCAATTCAGAACCATTCTTTAGAAGTGTGGAACATGTAATGGCTTTTCTGAGGTTAACTCAAAGGGACACGCAAGGACAGGAAAAGGACTGGAGCTGTAGGAAGGTGTACCATCTGCATAGCCGTTCTGTAATGCACTCACCCTGCATTTCCAGCCCAGCTCAGATCAGACGCTTCATTTTCTCCGGTTTTGGTGTCCCTGAGGTTGAAAGCACTTCATTGTAGAAATCCTTAAAAAGTAGCACAAAAACCCTAGATTCAGGTAGATGTTACCTAGCTCAATCTTCCTTTTTTATACCTCGAAAGAGGAATAACAGCTCAGTTTGTGAGAAGATCTTCATGTAGATACTCATTTGAAGAGGAAAAACCTTTTTACTGTAGATGAATCCACTAAAcctgttcagaaaaaaaaaatgtcctgcGACTTTTTGAGCCAATGTTCAAATGATGTAAGCACAAGACACAAGGCATTTTAAGCACTTCATAATAAAGGCAAAGTAAACAAA

Function

symbol description
scrt1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Is expressed in central nervous system and spinal cord neural tube. Orthologous to human SCRT1 (scratch family transcriptional repressor 1).
scrt1 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nuclear body.

NR:

description
PREDICTED: transcriptional repressor scratch 1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260321.1 True 2772 mRNA 0.45 2 18459745 18463326

Neighbor

gene id symbol gene type direction distance location
dgat1b dgat1b,LOC107741726,LOC107671724,LOC107724797,LOC107704850,LOC107587805,LOC107552801 coding downstream 69607 18376664 ~ 18390138 (-)
gpr20 LOC107741727,LOC107587806,LOC107704849,LOC107723110,LOC108436547,LOC103031715,LOC108263002 coding downstream 86828 18368344 ~ 18372917 (-)
dennd3b LOC107587809,LOC107704897,LOC107741729,LOC107672133,LOC107552815 coding downstream 105648 18341291 ~ 18354097 (-)
ptk2ab ptk2ab,LOC107704895,LOC107552863,LOC107741772,LOC107587873 coding downstream 120135 18284988 ~ 18339610 (-)
ldlrad4b ldlrad4b,LOC107598001,LOC107587810,LOC107741730,LOC107723105 coding downstream 204581 18240238 ~ 18255164 (-)
zgc:194210 NA coding upstream 89311 18552637 ~ 18557855 (-)
csnk2a1 csnk2a1,LOC107704901,LOC107714616,LOC107671775,LOC107724782,LOC108267736,LOC103028340,LOC105910791 coding upstream 95405 18558731 ~ 18565127 (-)
ptp4a3b ptp4a3,LOC107587801,LOC107714615,LOC107552859,LOC107704902,LOC107724783,LOC107671807,LOC103029087,LOC108436585 coding upstream 102725 18566051 ~ 18589702 (-)
ccn4b wisp1b,LOC107714595,LOC107587903,LOC107552812,LOC107704854,LOC107724778,LOC107672150 coding upstream 133630 18596956 ~ 18600264 (-)
tg tg,LOC107714614,LOC107672160,LOC107724770,LOC107552797,LOC107704832 coding upstream 138484 18601810 ~ 18632915 (-)
G114075 NA non-coding downstream 84131 18373968 ~ 18375614 (-)
LOC122360777 NA non-coding downstream 264577 18163340 ~ 18195168 (-)
G114035 NA non-coding downstream 343863 18095740 ~ 18115882 (-)
G114034 NA non-coding downstream 367679 18090687 ~ 18092066 (-)
G113926 NA non-coding downstream 504802 17954603 ~ 17954943 (-)
LOC122360486 NA non-coding upstream 65545 18528871 ~ 18544680 (-)
G114231 NA non-coding upstream 84862 18548188 ~ 18548939 (-)
LOC122360941 LOC107600493,LOC107719147,LOC107592185,LOC107685964,LOC107666785 non-coding upstream 223840 18687166 ~ 18688395 (-)
G114259 LOC107666800,LOC107719142,LOC107592439 non-coding upstream 276428 18739754 ~ 18740829 (-)
LOC122360016 apoa2,LOC107688286,LOC107728486 non-coding upstream 522077 18985403 ~ 18987926 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other downstream 92472 18357417 ~ 18367273 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other downstream 220476 18195471 ~ 18239269 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other downstream 628768 17812370 ~ 17830977 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other downstream 1777567 16586084 ~ 16682178 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 2220239 16232972 ~ 16239506 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 29300 18492626 ~ 18520287 (-)
G114236 LOC101883708,LOC105900568,LOC106574835 other upstream 186193 18649519 ~ 18650609 (-)
LOC122360747 plekha8,LOC107684546,LOC107745377,LOC107743161,LOC107596648,LOC107550836 other upstream 206281 18669607 ~ 18671274 (-)
LOC122360940 fli1,LOC107692484,LOC107709558,LOC107656981 other upstream 221247 18684573 ~ 18698407 (-)
rpz rpz,LOC107688232,LOC107728474,LOC107592467,LOC107671470,LOC107592140,LOC107726666,LOC107688233 other upstream 348912 18812238 ~ 18821110 (-)

Expression


Co-expression Network