twist1b (twist1b,twist1,LOC107684561,LOC107596643,LOC107728521,LOC107550839)


Basic Information

Item Value
gene id twist1b
gene name twist1b,twist1,LOC107684561,LOC107596643,LOC107728521,LOC107550839
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11985634 ~ 11987450 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260326.1
AGACTATAAGAGCTCCCCAAGTTTGTCCTTTCAACCTAACTCAAAGTTGCTCGGAATCCCCCATACCCAGTTATTTCCACGAGAACGAGCAGCGCGGGATTGGAATTGTACTTCACCCTCATGAGGGAATAACTTCGCGCGCGCTTTCAGCAGACTTGAACGAGATGCCCGAAGAGCCCGCGCGAGACTCCTCCAGCTCCCCCGTGTCTCCCGCGGACAGCCTCAGCAACAGCGACGGAGAGCCCGACAGGCCACCGAAGAGGTGCGGAAGGAAAAGACGGTCGAGCAGGAAAAACGGGGAGGACTCCGACAGCTCGACCCTTGGGAAAAGGGGGAAAAAGTCCAGCAACGGCAGCAACAGCCCTCAGTCTTTCGAGGAGCTGCAAACGCAGCGCGTGATGGCGAACGTGCGAGAGCGACAGAGGACGCAGTCGCTCAACGAAGCGTTCGCGGCTCTGCGCAAAATCATCCCCACTTTACCCTCCGACAAACTGAGCAAAATACAGACGCTAAAACTCGCCGCCAGGTACATCGATTTTCTCTGTCAGGTTCTACAGAGTGACGAGCTGGACTCCAAGATGGCAAGTTGTAGTTATGTTGCTCATGAGCGTTTGAGCTACGCGTTCTCGGTTTGGAGGATGGAGGGCGCATGGTCCATGTCTGCATCTCACTAGCGCGCAGGgaaactttttgttgttgttttcaaacGGTGAAAGCCAAGAGCTGGGAAAACTCGAGGACCGACGCGCCGACACAATGCTAGATTCCTTCGCAATCTGGGGGGAAAACTGCAAACGCTCCAACAGAGGTCACGGCTATTATCGAGAGAAGGCCACGGACAGCGCGCGCGCGCCGCGTATACGGACGTCCTCGCGAGCGTTATCATTGACGACGAATGTTGGAAATGTGTgcatatgcatgtttttctattgtttttgtttttttttatttgaagactCGGTTGTGCATAGCTTTCTTGGAGAAAGTGAAATTGCATCACGAAGACGGCGTGAAGATGGGGGATGAAGCCTCTAGTTCGAACCCTGTGCGAAATACAAAGTTTTAGtacaattctatttatttattgatgacACACTTTTTTGAAGCGAAGGCAAATGTATCCTGTGTCGAAAtgcattcttattttttttggctacttttgtaaataaatgtgtatttctgtAATAAAGATGGAGAACTTTTAAAGAAGCAGTTCACGTTAGTATCGAAATTGATTCGCTTCGTGTTTGTGTACGCGATTTTGAATTAAACGTCATGAATAATTTAGAAGGGAAAAACAGAAAACGACTGTTTAGTCttattatgaaaaatgattttgataGCTAGTAGGCTATCTAAAAACAATTACACGAGTTGGTTGGGCCAGggcaaaaaat
>XM_043260327.1
AGACTATAAGAGCTCCCCAAGTTTGTCCTTTCAACCTAACTCAAAGTTGCTCGGAATCCCCCATACCCAGTTATTTCCACGAGAACGAGCAGCGCGGGATTGGAATTGTACTTCACCCTCATGAGGGAATAACTTCGCGCGCGCTTTCAGCAGACTTGAACGAGATGCCCGAAGAGCCCGCGCGAGACTCCTCCAGCTCCCCCGTGTCTCCCGCGGACAGCCTCAGCAACAGCGACGGAGAGCCCGACAGGCCACCGAAGAGGTGCGGAAGGAAAAGACGGTCGAGCAGGAAAAACGGGGAGGACTCCGACAGCTCGACCCTTGGGAAAAGGGGGAAAAAGTCCAGCAACGGCAGCAACAGCCCTCAGTCTTTCGAGGAGCTGCAAACGCAGCGCGTGATGGCGAACGTGCGAGAGCGACAGAGGACGCAGTCGCTCAACGAAGCGTTCGCGGCTCTGCGCAAAATCATCCCCACTTTACCCTCCGACAAACTGAGCAAAATACAGACGCTAAAACTCGCCGCCAGGTACATCGATTTTCTCTGTCAGGTTCTACAGAGTGACGAGCTGGACTCCAAGATGGTGAAAGCCAAGAGCTGGGAAAACTCGAGGACCGACGCGCCGACACAATGCTAGATTCCTTCGCAATCTGGGGGGAAAACTGCAAACGCTCCAACAGAGGTCACGGCTATTATCGAGAGAAGGCCACGGACAGCGCGCGCGCGCCGCGTATACGGACGTCCTCGCGAGCGTTATCATTGACGACGAATGTTGGAAATGTGTgcatatgcatgtttttctattgtttttgtttttttttatttgaagactCGGTTGTGCATAGCTTTCTTGGAGAAAGTGAAATTGCATCACGAAGACGGCGTGAAGATGGGGGATGAAGCCTCTAGTTCGAACCCTGTGCGAAATACAAAGTTTTAGtacaattctatttatttattgatgacACACTTTTTTGAAGCGAAGGCAAATGTATCCTGTGTCGAAAtgcattcttattttttttggctacttttgtaaataaatgtgtatttctgtAATAAAGATGGAGAACTTTTAAAGAAGCAGTTCACGTTAGTATCGAAATTGATTCGCTTCGTGTTTGTGTACGCGATTTTGAATTAAACGTCATGAATAATTTAGAAGGGAAAAACAGAAAACGACTGTTTAGTCttattatgaaaaatgattttgataGCTAGTAGGCTATCTAAAAACAATTACACGAGTTGGTTGGGCCAGggcaaaaaat
>XM_043260328.1
AGACTATAAGAGCTCCCCAAGTTTGTCCTTTCAACCTAACTCAAAGTTGCTCGGAATCCCCCATACCCAGTTATTTCCACGAGAACGAGCAGCGCGGGATTGGAATTGTACTTCACCCTCATGAGGGAATAACTTCGCGCGCGCTTTCAGCAGACTTGAACGAGATGCCCGAAGAGCCCGCGCGAGACTCCTCCAGCTCCCCCGTGTCTCCCGCGGACAGCCTCAGCAACAGCGACGGAGAGCCCGACAGGCCACCGAAGAGGTGCGGAAGGAAAAGACGGTCGAGCAGGAAAAACGGGGAGGACTCCGACAGCTCGACCCTTGGGAAAAGGGGGAAAAAGTCCAGCAACGGCAGCAACAGCCCTCAGTCTTTCGAGGAGCTGCAAACGCAGCGCGTGATGGCGAACGTGCGAGAGCGACAGAGGACGCAGTCGCTCAACGAAGCGTTCGCGGCTCTGCGCAAAATCATCCCCACTTTACCCTCCGACAAACTGAGCAAAATACAGACGCTAAAACTCGCCGCCAGGTGAAAGCCAAGAGCTGGGAAAACTCGAGGACCGACGCGCCGACACAATGCTAGATTCCTTCGCAATCTGGGGGGAAAACTGCAAACGCTCCAACAGAGGTCACGGCTATTATCGAGAGAAGGCCACGGACAGCGCGCGCGCGCCGCGTATACGGACGTCCTCGCGAGCGTTATCATTGACGACGAATGTTGGAAATGTGTgcatatgcatgtttttctattgtttttgtttttttttatttgaagactCGGTTGTGCATAGCTTTCTTGGAGAAAGTGAAATTGCATCACGAAGACGGCGTGAAGATGGGGGATGAAGCCTCTAGTTCGAACCCTGTGCGAAATACAAAGTTTTAGtacaattctatttatttattgatgacACACTTTTTTGAAGCGAAGGCAAATGTATCCTGTGTCGAAAtgcattcttattttttttggctacttttgtaaataaatgtgtatttctgtAATAAAGATGGAGAACTTTTAAAGAAGCAGTTCACGTTAGTATCGAAATTGATTCGCTTCGTGTTTGTGTACGCGATTTTGAATTAAACGTCATGAATAATTTAGAAGGGAAAAACAGAAAACGACTGTTTAGTCttattatgaaaaatgattttgataGCTAGTAGGCTATCTAAAAACAATTACACGAGTTGGTTGGGCCAGggcaaaaaatgt

Function

symbol description
twist1b Enables cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including pharyngeal system development; regulation of bone mineralization; and sprouting angiogenesis. Predicted to be located in nucleus. Is expressed in several structures, including brain; cardiovascular system; cranial vault; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in Saethre-Chotzen syndrome; Sweeney-Cox syndrome; acrocephalosyndactylia; and craniosynostosis. Orthologous to human TWIST1 (twist family bHLH transcription factor 1).
twist1 Enables DNA-binding transcription factor activity, RNA polymerase II-specific; E-box binding activity; and bHLH transcription factor binding activity. Involved in several processes, including animal organ development; regulation of cellular response to stress; and regulation of gene expression. Located in nucleus. Implicated in Saethre-Chotzen syndrome; Sweeney-Cox syndrome; acrocephalosyndactylia; and craniosynostosis. Biomarker of pulmonary fibrosis.

NR:

description
PREDICTED: twist-related protein 2 isoform X1

GO:

id name namespace
GO:0030500 regulation of bone mineralization biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09069 TWIST; twist

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260326.1 True 1397 mRNA 0.48 2 11985636 11987450
XM_043260327.1 False 1269 mRNA 0.48 2 11985636 11987450
XM_043260328.1 False 1216 mRNA 0.48 2 11985634 11987450

Neighbor

gene id symbol gene type direction distance location
ankrd28b ankrd44,ankrd28b,LOC107685545,LOC107745379,LOC107550837,LOC107596646,LOC107684548 coding downstream 99985 11869198 ~ 11885649 (-)
hacl1 hacl1,LOC107743162,LOC107685543,LOC107745383,LOC107684560 coding downstream 120451 11855021 ~ 11865183 (-)
colq colq,LOC107743227,LOC107745382,LOC107684559,LOC107685587 coding downstream 130640 11839901 ~ 11854994 (-)
fkbp14 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding downstream 162083 11820787 ~ 11823551 (-)
cpvl cpvl,LOC107743225,LOC107684544,LOC107745375,LOC107550833,LOC107685540,LOC107596754 coding downstream 205654 11774974 ~ 11779980 (-)
tmem196b tmem196b,LOC107596721,LOC107685588,LOC107728522,LOC107684562,LOC107550817 coding upstream 12120 11999570 ~ 12000907 (-)
macc1 LOC107743168,LOC107685548,LOC107596642,LOC107728525,LOC107684550,LOC107550840 coding upstream 20007 12007457 ~ 12012944 (-)
sp8b sp8b,LOC107685617,LOC107596752,LOC107728520,LOC107743231,LOC107684564,LOC101158882 coding upstream 48457 12035907 ~ 12040947 (-)
rapgef5b LOC107596719,LOC107685551,LOC107581543,LOC107728526,LOC107674937,LOC107743169 coding upstream 168320 12155770 ~ 12203088 (-)
si:ch211-254p10.2 LOC107685554,LOC107596717,LOC107752844,LOC102209663 coding upstream 220655 12208105 ~ 12214349 (-)
G111668 NA non-coding downstream 1988 11983379 ~ 11983646 (-)
G111661 NA non-coding downstream 41679 11942364 ~ 11943955 (-)
G111639 NA non-coding downstream 165856 11818459 ~ 11819778 (-)
LOC122360397 NA non-coding downstream 201300 11783695 ~ 11784334 (-)
G111625 NA non-coding downstream 204462 11780787 ~ 11781172 (-)
G111680 NA non-coding upstream 45143 12032593 ~ 12035126 (-)
G111688 NA non-coding upstream 88147 12075597 ~ 12076159 (-)
G111689 NA non-coding upstream 89003 12076453 ~ 12077007 (-)
G111690 NA non-coding upstream 93202 12080652 ~ 12080853 (-)
G111712 NA non-coding upstream 150011 12137461 ~ 12137772 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 118319 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 573857 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 598641 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 699202 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 1102210 10857520 ~ 10883424 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 376335 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 1666610 13654060 ~ 13683909 (-)
G112478 NA other upstream 2247104 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2510813 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 2595029 14582479 ~ 14587869 (-)

Expression


Co-expression Network