LOC122360041 (LOC107687802,LOC107595942,LOC107706353)


Basic Information

Item Value
gene id LOC122360041
gene name LOC107687802,LOC107595942,LOC107706353
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16557546 ~ 16560034 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260336.1
AAACGCGCCGCGCCTCGCGCACGTGATACACGCGTTCGCTGAGGACGAGCCTGATGAGCGCGCACCCGTCGTCATCATGGGAAGTAGTGTTTTCAGCGGAGGAGAAGCAACTGAGGAGAATGTCTGAGGTAAATGCTCCCATTGAAAAAGTCTCTATAACAGCCCTAGAGTCTGAGACTCCGCCCTTAAAGTCAGATACAGGGCCTGTGATTGGTGGACTGCGTTTGCGCTCTGCACCAGGGGCTTGTTTGTTGTTTGCGGGTGTTTTGCTGATAGTTGGAATCGGCGTCGCTGTAGGGGGGTACTGGAACAGTCAACCCCGCAGACAAACACCACATCATGCTTCAACTGGACGCACCTCTTCAGAGAAACTGAAGCTAATTGGTCCTGTCATTATGGGGGTGGGGcttttcatctttatttgtGCCAACACAATTCTCTATGAAAACCGTGACAGAGAACAACGTCATAAGCGAGACCATCAAAAACACGACCAGGAGATCCTAACACTGGTACAAACCCATCGGAATAATCATTCAAAGCAGTTCCcacacacagaaatgaaaaccAGCACACATACATTGGACTTGTCCGAATTCAACATCCATTGCTTAGAGGAAGGGGACGGAATTCCCACCCTAAAGTGTTCTTTGCCTTCCTCTGGCTCATGTAGCTCTAGTCAAGTGAACCTGGAAACCGGATCACCCCTCAGAGTACGCAGAAACATGGAAAGACTGGCCTTGCCTGTCATTAAAGTCAATGACTGCCTGATTTGCTCCTCAGACCCGGTGCCTCCACCTCTCCCTGATCGGACATACATGAACAAGATGGGAAAAGTGGAAAACACAGCAAACGTGGAGCTAACACAAGTGACTCTTGCAGAATCATCTCTAATGATATTGAACAAAGAAGAGCCAAAGGATCGGTAGGCTTAGTCCACATTAAGGttcatataatgcatatattgaatatattcaGGCCAAGAGATGTTAGAGTTTAATACGATTTCTCTATTTGATTTTGATTCGATTCTGATTCATTTGGGTGTATTTCCATTATAATGTCCAATTTGATTACAGTTCTTTCTCTGCTCCTGCTATAATGTTTCAGATGGATTCAAGCTAATCTTTTTGAAGCCACtctttgaatgaatcagcttCACTGTATGGTTTTGAATCACCAAAAAGATTTGTTTGCTAATGGTCACGTTTGtctgtttatgtaattttatgttGTCACACTGCTGTACTTAGTCTTTTTTATTACATCACGGTATACAGAACTCCAATTTAGCTTAACCGTTTTGGTAAACTCTTTTCTGAGAGAAATAGACGATTTTCATGTACGTGgatgaataaatagaaattagttttctttttgatgttttcaaTGAATCTTCCCTTGCATTGTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107687802

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260336.1 True 1412 mRNA 0.43 2 16557546 16560034

Neighbor

gene id symbol gene type direction distance location
megf8 megf8,LOC107595817,LOC107687796,LOC107593670,LOC107657710 coding downstream 17933 16514357 ~ 16539613 (-)
LOC122359884 LOC107706374,LOC107687795,LOC107595808,LOC107723391 coding downstream 43575 16508483 ~ 16513971 (-)
erfl1 erfl1,LOC107723390,LOC107596612,LOC107706551,LOC107657604,LOC107699460,LOC108431014 coding downstream 78503 16439901 ~ 16479043 (-)
arhgef1b arhgef1,LOC107706396,LOC107657708,LOC107723498,LOC107595767 coding downstream 118091 16407152 ~ 16439455 (-)
cd79a NA coding downstream 151893 16402969 ~ 16405653 (-)
l3mbtl1b LOC107687798,LOC107706333,LOC107723564,LOC107657713,LOC107593673 coding upstream 1665 16561699 ~ 16570438 (-)
sgk2b sgk2b,LOC107687822,LOC107595908,LOC107706345 coding upstream 11332 16571366 ~ 16575436 (-)
rnf41l rnf41l,LOC107687809,LOC107723454,LOC107593678,LOC108443277 coding upstream 86512 16646546 ~ 16650313 (-)
pdp1 pdp1,LOC107706250,LOC107595893,LOC107687812,LOC107593682,LOC107723551 coding upstream 128181 16688215 ~ 16693128 (-)
ino80c ino80c,LOC107706244,LOC107723410,LOC107657632,LOC107596621,LOC107593731 coding upstream 137287 16697321 ~ 16698849 (-)
G113405 NA non-coding downstream 3688 16552608 ~ 16553858 (-)
LOC122360769 NA non-coding downstream 62807 16488118 ~ 16494739 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding downstream 199923 16352270 ~ 16357623 (-)
G113281 NA non-coding downstream 360869 16120326 ~ 16196677 (-)
G113433 NA non-coding upstream 28651 16588685 ~ 16589614 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding upstream 46680 16606714 ~ 16607680 (-)
G113470 cdh17,LOC107595837,LOC107706528,LOC107687825 non-coding upstream 119650 16679684 ~ 16680112 (-)
G113473 NA non-coding upstream 133896 16693930 ~ 16694290 (-)
LOC122360493 NA non-coding upstream 164384 16724418 ~ 16737282 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 318040 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 329080 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 416311 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 543795 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 551075 16001313 ~ 16006471 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other upstream 26050 16586084 ~ 16682178 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1252336 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1635437 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 1797383 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 1932592 18492626 ~ 18520287 (-)

Expression


Co-expression Network