LOC122360042 (LOC107587797,LOC107714594,LOC107704906)


Basic Information

Item Value
gene id LOC122360042
gene name LOC107587797,LOC107714594,LOC107704906
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23081229 ~ 23089594 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260337.1
gttaggtatgttttgaagctgggatgcttgtttatgctggtccttttcAGGTTTATGCTAGTCTtttgctggtcctttgctggacTTAAGGTGACTGGACCAGGTTATTGATTAGTTTATCTTTATATGCTGCCTGTGTAGTGGCCAGATTTCTGTGATGCCTTCTTTCTGAGGATTTAGTGTACAGCAGCAGATGTCCGCAGTCAGCCCTTATCTCTTTATCCCTGTGGATGGTTGAAGGCTGGAGTTCTCCCAGGCCTGAATTTTGTCTGGAAAGATGGAATACTGGTGGAACTTGTTAAATGTTTTCACGTTTTGGGAAGTGACACAGATGCCATCATGCTATTGTCTGGTGCGACATAAGCTGCCAGTTTTATGGATTATGCCACTCAGCGGAGATCCAGGGAGCAACTTTACGGCAGTGCTTCCTGCTGCTGAGTTAGCTCTGCATCATTTGAGCGAGCAGCCGTCTCCTTTAGGTGACTACGAGCTTCAGTTTCATCTTACAGACTCAGAGTGTGATAACAGCAAAGCGctcaaagcattttttgacACCATATTCAATGGCCCCAAACCTGTCATGATCTTTGGAGGGGTGTGTTCGTCTGTGACGTCTGTCCTAGCCCAGTCTTTGGAAGGATGGAACCTTGTGCAGCTGTCATTTGCAGTAACAGCACCTTCCATGGCCAACAAAAGAATATTTCCAAACTTCTTCCGCACTGTGCCATCAGACAGTGCAGTTAATGTGGCTCTGGTGAGGTTTCTCAGGCAGTATGGATGGAGTAGAGTTGGTACACTGACTCAGCGTGAGCAGAGGTTCACAGAGGTACAGATGGACTTGAGCAGACGTCTGGAGATGGCTAACATCCAGCTTGCAGAGGCCGAGAGCTTCTTTGAAGCCCCTtgtcatttttattattatttacaggaCAATGATGTGAGAATCGTCATTGCTCATTTTGATGTGAATTTTGCTGCTAAAGTCTTCTGCTGTGTGTATAATCTCAACATGTATGGCCAAAAGTACCAGTGGATTCTACCAGGCTGGACCCAGGCCAGCTTGTGGAATAACACGGGCTCCACAAACTGCACAGCTGAAAACATACTGACTGCCATAGAGGGATCCATCAGTGCAGATATTGAGACTCTTAGCACTAGAAACATCCGAGGGATCTCTGGCCGGTACAAGAAGGAGTATGATGAAAGACGACAGCTGAAGCGTCTGGGTGCAAACAAGTTTCATGGCTTTGCTTATGATGGTACTTGGGTAATTGCTAAAGTTTTAACGAGAGTCATGGAGACTGTGAGGTACAGAGAAAGATACAGCATCCATCGCAACTTTACTGTCACTGAGCAGGAAGTGGGACAAATGATTCTGGAGGCCATGGATAAGATCAACTTCTTTGGTGTGACAGGTCACATTATGTTCCAAAAAGGTGAAAGAACAGCCAATGTGAAGATTGCTCAGTATCAAGATGGAAGGGCTGTCGATATCGAAAAATATAGTGCCATTACAGATGAACTAGAGTTTATTAGTCCAATCAGATTTCAAAGGGATAAACCCACAAAGGACCGAACCCATGTGTACCGTCACAGGAAACGCATCAGTATATTTCTCTACGGTATTGTGGCGTTTCTAACTTTCTTAGGGATTTTTACAGCGTGCAGTTTCCTGGTCTTCAGTCTGAAACACCACAATCATTGGGCCATTAGCATGTCAAAACCTTTTATGAACTCTTTGATTATTCTTGGTGCTGTGTTGTCTTATTCCTCCATTTTCTTCATGGGACTAGATGGATCATATGTTTCTGATAGAGTATTTGAAGTTTCTTGCTCTGTACAAATCTCATGTTTATCTATTGGATGTACAGCAGCTTTTGGGGCCATGTTTGCAAAAACATGGACAATTCGATCATTCTTCAAAAACCACAGTGCTgaaaaaaagGCCACAAAGGACTATGGGCCAGTTCTCctgattatttttcttttgttaattgaCCTGAGTTCATTAATTTGTCTGCAATTTTTGGATCCTTTAAGGAGAACAGTGAAGGAGTATCACATAGTGgcTGATCCTCACggtcaagatttttttattcagcccTTTACAGAGCGATGTGAAAACACATACATGGGTTTCTGGATGGCTGCTTTCTATATTTATAGGGGTCTTATCCAGCTAAGCACCTGTTTCCTGGCCTGGACCACATGCCACATGAACATTCCTGCCATAAATGACAGCAGGAGTATCCGatacagtgtgtttgtgtcagtcCCAGTGATTCTGATTGGTACTTGTGCATCCATGCTGTGGCAGGAGCAGCCAAATGTGCAGTTCTTCATTGTGACCCTTGTGATAATCACATGCTGCTGTAGCACTCTTTGTATGCTGTTTATTCCAAAGATTATTATAATAAGGATGGGTCCTGATCCTGCATTCTTGTCAAGGAGGTTCCACCTCACACAGTGGTGTGGTGAATTAGAAATGGAGATTGGACAAGGCAAGAGGATCTTCATGAGACCGAACAACCCAGGAACATGTAGCTATGTGACTGACATGACACAAAACATCTTGTCTAGTCTGGACATTCTACTGTCAGAAAACCTAAACCTCaaacagcacattaaaaaaCTGGATTCTGAGATGGAGAATTTAACCAGGCAACTGAGAACTGAGCCTCACGTTATGGAGAACGTCATCATCAGAAGTTTTGTGCACAAAGCagtcaaagagaaatgtctgaCTCTCCCTGAAAGCTCCAACTATAAGAGGAATCTGCCGGAGAACGTTAACTCCCCTGAACGcATTCGCCGCAGACTGTCTCTGCAGTTACCCATTCTGCATCATGCCTATCTGCCCTCTATTGGAGGAGTGGACTCCAGTCCTCTTAATAGCCCTTTTGAAAGCCCTCGACATTCGCCAATGCCCAGGACATATGGAGTGCTGGTGACAGGATTGTAATTTACTGTACAGTAGGAGACAAAATAAACTTACATAATATTTCAAACCAGACTTActtatatattgtatacatgCATTATATCTGGTATAATGTAATGGAACTTGAATTATAATTTCAATCTAAAAATGGGaatattttaaggtttaaaaataaagctgcttcTAAATGACctgattatattttaagaaaagaacagacatgattattttcaaatggtagaaaaaatattatttcacctGTTAAAAAAGTTGCCATAGTTTCCAGATTAA

Function

NR:

description
PREDICTED: gamma-aminobutyric acid type B receptor subunit 2-like isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260337.1 True 3232 mRNA 0.42 23 23081229 23089594

Neighbor

gene id symbol gene type direction distance location
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding downstream 9040 23064745 ~ 23072189 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding downstream 98338 22977925 ~ 22982891 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding downstream 151312 22915967 ~ 22929917 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding downstream 266134 22812569 ~ 22815095 (-)
plekho1b plekho1b,LOC107705315,LOC107681431,LOC107588474,LOC107755867,LOC107556112,LOC107697224 coding downstream 284209 22779235 ~ 22797020 (-)
LOC122360196 NA coding upstream 363 23089957 ~ 23096651 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding upstream 7673 23097267 ~ 23102702 (-)
LOC122360201 LOC107724792,LOC107552857 coding upstream 13576 23103170 ~ 23109883 (-)
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding upstream 27904 23117498 ~ 23121209 (-)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803 coding upstream 32757 23122351 ~ 23139126 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 3359 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 7779 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 24699 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 28954 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 31386 23049549 ~ 23049843 (-)
G115621 NA non-coding upstream 75599 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 95456 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 236614 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 726303 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 727306 23816900 ~ 23817100 (-)
G115554 NA other downstream 147262 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 180042 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 992137 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1112694 21964855 ~ 21968535 (-)
G115149 NA other downstream 1277425 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 430214 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 493399 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 578471 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1227888 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1275046 24364640 ~ 24369566 (-)

Expression


Co-expression Network