LOC122360053 (LOC107688272,LOC107707632,LOC107552516,LOC107671410,LOC107733025,LOC107568861)


Basic Information

Item Value
gene id LOC122360053
gene name LOC107688272,LOC107707632,LOC107552516,LOC107671410,LOC107733025,LOC107568861
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 26103544 ~ 26107754 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260360.1
CTGCAGAAGAAGAAACTTCCCTCTTTGACTTAACGGTGCAGCATGTGTCAAAGTGACATAATGAGAAAAAGCCTTTAAAAGACTGTAGGAGCTGCACGTTATCACTTCTGAATCTGTGGAGTGGATTGATTTATTAAGAAAGCATCTACATCGACGATGGCGTGGACGGTGACTATGAGTAACCTGGTGTTAGGGGTCTACGGATTCACGCTGATCACGGGCCTTCCCGCCAACGTCTTGGCTTTCTACACCTTCCTGCAGAAGATCCGCCAGCGCTCCACCCCGATAGACGTGCTGCTGCTCAGTCTAACCGTCTCCGACCTGATCTTCCTCTTTTTCCTGCCCTTTCGCATGGTGGAGGCGGCCAACATGAAATGGACGATGCCTTACTTCCTCTGCCCGCTGTCGGGATTCATCTTCTACTCGGTCATCGCCAACAGCATGCTTCACCTGGCGGCCATCAGCGTGGAGCGCTACCTGGGTGTGGCCTTCCCCATTAAATACAAGCTCAAGCGCAACCCCAGAAGCGCTATGATAGCCTGCgtctttttctctgtgttttcaaTGGCGCACTGCAGCATCGTCTTTGTCATGCAATACCAGAACTATTTCAACCCCAACATCACCGATCCATCCAAACGCAACACCTGCTACGCCGAATTCACCCAAGAACAACTCAAGATCCTCCTGCCGTTTCGGCTTGAGCTTTCCATTGTCTTCTTCTGCATCTCTTTCCTCATCTGCTGCTTCTGCTACGTCCAGTGCATCCGCATACTTTCCCGACTATCCACCGTCAACCCCAAGAAGCGGTACAGAGCCATCGGGATGGCGTTGGGCACGCTTCTAGTCTTCGTTATCTGTTACATGCCCTTCAACATCTCGCACGTGGAGGGGTTCGTAAGAGGCAACAGCTCTAATTGGAGAGAACCTGCTTTGCTCACCAGCACGTTGAATGCATGCCTCGACCCGTTCGTGTTCTACTTCTCTTCCTCCGCTCTCAGAAAGACTTTCAAGAAGGTGTTGCAGGGGCTGGCGAATCGTTTTCTCCTTCCTTGCTGCCGCTCGGCTGTCTGCTGCCCTTTATTAAACCGTGGGAAACCAGAGGATCGAACCCAGAGCTCCGATGACAGCATCCTCTAATTTTTAAAGCCTGTGTTTGCATTGAAGAATAATCTGCCTGCATATGCGTCATCAATGCAAATGATTTAGTCTAAAGCCATTTCTAATGCACCGCCATGACCCAGTGCTTTCTGGACAGACGCAAGAAGAGCAGCACAGAACTGGTTCCAGATTaaaaatcaagcatgatttcaTGATCATTTTACCTGACTGAGTGAACAAATACCACTGCATCTGAACCGTACATCAAGCATTTTGAACTAACACGCGGCATTCGCTATCAGCAACACATGTAATCAAAGCTAAACTGTCTTTGCtactaatatttcaataaagGAAACTCATACGAATTATA

Function

NR:

description
PREDICTED: free fatty acid receptor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260360.1 True 1474 mRNA 0.49 3 26103544 26107754

Neighbor

gene id symbol gene type direction distance location
si:ch73-90p23.1 si:ch73-90p23.1,LOC107707631,LOC107688273,LOC107568869,LOC107552515,LOC107733026,LOC107671412 coding downstream 136 26091378 ~ 26103408 (-)
LOC122360054 LOC107707625,LOC107688253,LOC107568862,LOC107733023,LOC107671396,LOC107552509,LOC100004033 coding downstream 14640 26084774 ~ 26088904 (-)
etfb etfb,LOC107688199,LOC107707641,LOC107728982,LOC107671471,LOC107552519 coding downstream 351444 25746565 ~ 25752100 (-)
vsig10l vsig10l,LOC107707630 coding downstream 358500 25735523 ~ 25745044 (-)
lim2.5 lim2.5,lim2,LOC102215845,LOC100699404 coding downstream 369962 25731193 ~ 25733582 (-)
si:dkeyp-97a10.3 LOC107733029,LOC107552521,LOC107671397,LOC107568860 coding upstream 115 26107869 ~ 26120740 (-)
LOC122361084 LOC103367052,LOC103477771,LOC100706402,LOC102311978,LOC103139281,LOC101466533,LOC107379323,LOC107552522,LOC567622,LOC102231083,LOC108413244 coding upstream 26494 26134248 ~ 26173373 (-)
ago1 ago1,LOC108256363,LOC103040377,LOC102230823,LOC107379324,LOC103367053 coding upstream 69378 26177132 ~ 26204649 (-)
LOC122360601 LOC107671449,LOC107564094,LOC107671448,LOC107564095,LOC107688189,LOC107707648,LOC107552529,LOC107552527 coding upstream 133026 26240780 ~ 26246320 (-)
LOC122360605 LOC107688191,LOC107707651,LOC107552511,LOC107552530,LOC107671451,LOC107564104 coding upstream 142338 26250092 ~ 26251859 (-)
G116351 NA non-coding downstream 30538 26020525 ~ 26073006 (-)
G116350 NA non-coding downstream 34010 26062291 ~ 26069534 (-)
G116282 NA non-coding downstream 325140 25776736 ~ 25778404 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding downstream 396748 25704700 ~ 25706796 (-)
G116264 NA non-coding downstream 408187 25694109 ~ 25695357 (-)
G116360 NA non-coding upstream 22526 26130280 ~ 26130806 (-)
G116611 NA non-coding upstream 278044 26385798 ~ 26386007 (-)
G116633 NA non-coding upstream 512536 26620290 ~ 26678901 (-)
G116638 NA non-coding upstream 565170 26672924 ~ 26673379 (-)
G116647 NA non-coding upstream 631351 26739105 ~ 26739861 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other downstream 392858 25664719 ~ 25710686 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 1630179 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 1733978 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 1763756 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 2428199 23668065 ~ 23675345 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 271918 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 313964 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 699366 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 702563 26810317 ~ 26812974 (-)
G116668 NA other upstream 766644 26874398 ~ 26876610 (-)

Expression


Co-expression Network