XLOC_006713 (ubtd1a)


Basic Information

Item Value
gene id XLOC_006713
gene name ubtd1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31371536 ~ 31378683 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012931
AGCTGTCTGTTGTGAAAAGTCACTCACAGACATAAACCCAAGCCAGAGATTGCAAACACAGGAGCTATTTCCTGCATACAAGCTATTTAGGACACTCGCTTTTGATTTATATTCGTGTAgcagttatttttagttttagaaaAAAAGGTGATGGTCATGTGCAGTTTGCAAGAAACTGTACTAAGCTGCTAGTGAGTGTTAGACACCGTGTAGTACACGTGTAATTGATTATTCCTCAACCTCCGCATGAAGTCATAGGAGCGACAGTGCGGCAGTCCTTTAACTTTTTACTGATTGAAGGAATAAGGGACCGTTCTGATCATGGGAGTTGCAAACTCAAGAGACTATCGACCAACCATAACAGTAGTGCTGAAAAGACGCAACGAGCCCCTGAAGAAAGATAAGCCCAAGTGGAAAAGTGACTATCCTATGACGGAGGGCCAGCTGCGCAGTAAAAGGGATGAATTCTGGGATACAGCCCCAGCTTTTGACGGCCGTAAAGAGATCTGGGACGCGCTCAAAGCTGCAGCTGTGGCGATTGAATGTAACGACCACCAACTAGCACAGGCTATTGTAGATGGAGCCAGCATCACACTGCCTCATGGATCCCTCATGGAGTGTTATGATGAACTGGGGAACCGCTATCAGCTTCCTGCATACTGCTTGTCTCCACCTGTCAACCTGGTCTCTGAGTGCAACGATCATAATGCGTCTGAAAACGCTGAGCCACAGGAGAAAAAAGAGAAGGAGTTTCAGTTGAAGGTTCGTCTGTCCACTGGGAAAGACCTTCGCCTCAGTGTCACCATGGCCGATTCCATTCGTCAGCTCAAGAAACAGCTCCAAATTCAGGAAGACATTGATACCGCTCACCAGCGCTGGTTTTTCTCTGGAAAGCTTCTTACAGATAAAACCCGCTTACAGGACACCAAGATCCAGAAAGACTTTGTAATACAGGTCATTGTTAGTCAACCTATTGTTACCAGCTAAACACTGTGGACCAGTATTCAGTGAACTAATGTCAATTGTGAAACGCAACCTTTTCTTTtaggaacatttatttattttcaaacttgAGAGGAACTAAAAGGTTAATTGTACATGTTAATATGTGTAAAAGTTGCATGTTGTTTTACAATAATTGGGAGTGTACAGTCACATTCTCAGGTTGTTGTTTACTATAAGTTTAACTGTCCATATCTGTGTACATTATATACTTTGCCTTCTTGGTTATAATATCCTTACATATGTTGTGTGGATATCAATTTCCAGGCTTTGTGGTATCAATTGCCTTGATCCATTctaccagggatgtccaaactcagtcctggagggccggtgtcctggagagtttagctccaacactaatcaaacacaccttaaccagctaatcaagcttttactagatatactagagcagtgtttctcaaccacattcctggaggaccaccaacactgcatgttttggatgtctcctttgtctgtcacacccttTACACCtcttttagtctctgctaatAAGCTCACGTGGTTGAGAGACACTGTACTAGAGAGTAACTGGCAGATGTGTTCAGCAGGACTCCAGGAGTTCGGACACCCCTGCATTATACAGTTTACTGTCTATTTACAGAGCTTAAGGATCTTTTTTTTAGACAGCATTATGTTATTGCATATTTATAGAACTTTGACTCGTTGAATGGTTGAACAATGGCTGTTGAACAACAACATTCAAACCTTGGTACTGTGTTGGATTATGCATTGAGAGatgtatttctttttcatttgtgaaGTACTGacgggtatttttttttttaatcaaaaactaaATCTAAGCTGAAACtgcttattgttatattttagatAAAAGAATACGAATGGGAGCTAATTGGGAATCTGAAAGAAAAACACTTGTCAAATCTCACTGTCAACATTTCACATGTTTATATTAAATGTGACTTATTTCTGTACAGtgacaaa
>TCONS_00012932
ACATGTCGACTCAGCGGAAAACAACGAGCttgtgtctctcctcagacaccaGTACATCTGACAACAGAAAATAGGAGTATATTAGTTAGACACAATCTTTCTTCTGGAACGGCCAAATATCACTTGCTGACGTCACTGCCTTTTGGTTTGGATAGAAATGCATGTATTCGGTGGCTGTCAGGCGTGGGGGGCTTGGTCCTGATGGTAGTTTGAGGGATGGGAAGTTGTTTTGGAGTGATCCGTCAAAGGTCTCGCCTGTCCTCCAGAAATGCACCCAGCAACGGCAACAAACGAGGAGGACGCAACGAGCCCCTGAAGAAAGATAAGCCCAAGTGGAAAAGTGACTATCCTATGACGGAGGGCCAGCTGCGCAGTAAAAGGGATGAATTCTGGGATACAGCCCCAGCTTTTGACGGCCGTAAAGAGATCTGGGACGCGCTCAAAGCTGCAGCTGTGGCGATTGAATGTAACGACCACCAACTAGCACAGGCTATTGTAGATGGAGCCAGCATCACACTGCCTCATGGATCCCTCATGGAGTGTTATGATGAACTGGGGAACCGCTATCAGCTTCCTGCATACTGCTTGTCTCCACCTGTCAACCTGGTCTCTGAGTGCAACGATCATAATGCGTCTGAAAACGCTGAGCCACAGGAGAAAAAAGAGAAGGAGTTTCAGTTGAAGGTTCGTCTGTCCACTGGGAAAGACCTTCGCCTCAGTGTCACCATGGCCGATTCCATTCGTCAGCTCAAGAAACAGCTCCAAATTCAGGAAGACATTGATACCGCTCACCAGCGCTGGTTTTTCTCTGGAAAGCTTCTTACAGATAAAACCCGCTTACAGGACACCAAGATCCAGAAAGACTTTGTAATACAGGTCATTGTTAGTCAACCTATTGTTACCAGCTAAACACTGTGGACCAGTATTCAGTGAACTAATG

Function

symbol description
ubtd1a Orthologous to human UBTD1 (ubiquitin domain containing 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-93 Orthologous to human UBTD1 (ubiquitin domain containing 1).

Ensembl:

ensembl_id ENSDARG00000007382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012931 False 1974 mRNA 0.41 3 31371536 31377299
TCONS_00012932 True 940 mRNA 0.49 3 31372492 31378683

Neighbor

gene id symbol gene type direction distance location
XLOC_006712 rrp12 coding downstream 1352 31343326 ~ 31370184 (-)
XLOC_006711 prdm8 coding downstream 75178 31292700 ~ 31296358 (-)
XLOC_006710 CR931802.1 coding downstream 166343 31193485 ~ 31205193 (-)
XLOC_006709 mapk8a coding downstream 204075 31147518 ~ 31167461 (-)
XLOC_006708 CR931802.2 coding downstream 244490 31126449 ~ 31127046 (-)
XLOC_006714 zdhhc16a coding upstream 1101 31379784 ~ 31389661 (-)
XLOC_006715 pgam1a coding upstream 14509 31393192 ~ 31397987 (-)
XLOC_006716 rtn1a coding upstream 45903 31424586 ~ 31470439 (-)
XLOC_006717 dhrs7 coding upstream 158026 31536709 ~ 31544365 (-)
XLOC_006718 BX537123.2 coding upstream 200765 31579448 ~ 31579564 (-)
XLOC_006471 BX537274.2 misc downstream 21106631 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 30545311 825904 ~ 826225 (-)
XLOC_006707 NA non-coding downstream 248698 31102907 ~ 31122838 (-)
XLOC_006706 NA non-coding downstream 279136 31089586 ~ 31092400 (-)
XLOC_006705 BX005005.1 non-coding downstream 295589 31075833 ~ 31075947 (-)
XLOC_006722 BX537123.1 non-coding upstream 316248 31694931 ~ 31695047 (-)
XLOC_006723 NA non-coding upstream 421349 31800032 ~ 31800406 (-)
XLOC_006727 NA non-coding upstream 571474 31950157 ~ 31955798 (-)
XLOC_006728 NA non-coding upstream 604378 31983061 ~ 31999012 (-)

Expression


Co-expression Network