calb1 (calb1,LOC107704882,LOC107588486,LOC107700706)



Basic Information


Item Value
gene id calb1
gene name calb1,LOC107704882,LOC107588486,LOC107700706
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25179830 ~ 25190749 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043260387.1
TACCGGAGACATCACAGAGCACCGTCTCACAGCATCGGTCTCACAGCTTCAGCGCCCGACACACGGAGAAAACATGGCAAACGCCTACCTGCAAGGAGTAGAGATCTCAGCCTCTCAGTTCCTGGATATATTTCACCATTATGACAACGATGGTAATGGATATATCGAGGGGAAGGAGTTGCAGAATTTTATCAAAGAACTTCAGCAAGCTCGAAAACAAGCAGGACTGGAACTAACAGACAAAATGAAGGCCTTTGTGGAGAAATATGAGCAAAACGCTGATGGAAAAATAGGTATCATTGAGCTGGTTCAAATACTCCCTACAGAGGAAAActtcttattatttttcagaCAACAGCTGAAATCCTGTGCAGAGTTTATGGAGGCTTGGAGAATTTATGACGCTGATCACAGTGGATACATCGAAGCTGACGAACTTAAGaattttttgaaAGACCTGCTCCAGAGAGCTAAAAAACCATATGATGAGAAGAAATTAGAGGAGTACACACTAACTACGctgaaaaTTTTCGATTCAAATAAGGATGGGAAATTATGTCTGTCAGAAATGGCACGactgTTACCGGACCAGGAGAACTTTCTACTTAAATTTCAGGGGGTTAAAATGGCCAGAAAAGAGTTCAACAAGATTTTTGAGTTATACGATCAGGACAGGAACGGTTACATGGACGAGAATGAGCTTGACGCCCTCCTCAAAGACCTTTGTGAGAAAAACAAGAAGGTTCTAGAAGTCAACAAAATCCCCGACGTATAA
>XM_043260388.1
TACCGGAGACATCACAGAGCACCGTCTCACAGCATCGGTCTCACAGCTTCAGCGCCCGACACACGGAGAAAACATGGCAAACGCCTACCTGCAAGGAGTAGAGATCTCAGCCTCTCAGTTCCTGGATATATTTCACCATTATGACAACGATGGTAATGGATATATCGAGGGGAAGGAGTTGCAGAATTTTATCAAAGAACTTCAGCAAGCTCGAAAACAAGCAGGACTGGAACTAACAGACAAAATGAAGGCCTTTGTGGAGAAATATGAGCAAAACGCTGATGGAAAAATAGGTATCATTGAGCTGGTTCAAATACTCCCTACAGAGGAAAActtcttattatttttcagaCAACAGCTGAAATCCTGTGCAGAGTTTATGGAGGCTTGGAGAATTTATGACGCTGATCACAGTGGATACATCGAAGCTGACGAACTTAAGaattttttgaaAGACCTGCTCCAGAGAGCTAAAAAACCATATGATGAGAAGAAATTAGAGGAGTACACACTAACTACGctgaaaaTTTTCGATTCAAATAAGGATGGGAAATTATGTCTGTCAGAAATGGCACGactgTTACCGGACCAGGAGAACTTTCTACTTAAATTTCAGGGGGTTAAAATGGCCAGAAAAGAGTTCAACAAGATTTTTGAGTTATACGATCAGGACAGGAACGGTTACATGGACGAGAATGAGCTTGACGCCCTCCTCAAAGACCTTTGTGAGAAAAACAAGAAGGATGAAAGTCAACAAAATCCCCGACGTATAAAGAGCGCCATCATGGCTCTGTCTGATGGTGGCAAGCTCTACAGAACAGAGTTAGCGTTGGTGTTGTGCGCAGATGAGATGTGAACACTTCCGTCTGTACACATTATCCCAGAACCCCATCCTCAGCTCGTCTGTGACGCGTAAAATAGCTAGAACCCTCTTATGTTCTTTCATTTTGGACATGGATTTCACATAGACAGGCAACCCTGTGGCACATACTTTTCAATTTGTTGTTTCTATACGGTTTCTAAGTGTACAGATTTTTTAACAATGGCACACGTACAATACTTACAACCTACACTGCATACATGAACATGATATTTCCCTTAACAAAAGAA

Function


symbol description
calb1 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of long-term synaptic potentiation and regulation of presynaptic cytosolic calcium ion concentration. Predicted to act upstream of or within calcium ion homeostasis. Predicted to be active in several cellular components, including cytosol; dendritic spine; and terminal bouton. Orthologous to human CALB1 (calbindin 1).

NR:

description
PREDICTED: calbindin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K14757 CALB1, CALB; calbindin

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043260387.1 False 775 mRNA 0.42 11 25180167 25190749
XM_043260388.1 True 1110 mRNA 0.42 12 25179830 25190749

Neighbor


gene id symbol gene type direction distance location
pik3r4 pik3r4,LOC107556101,LOC107755706,LOC107588487,LOC107705468 coding downstream 7369 25161763 ~ 25172461 (-)
capn7 capn7,LOC107705521,LOC107755679 coding downstream 61377 25107398 ~ 25118453 (-)
mrps15 LOC107705916,LOC107704881,LOC107700664,LOC107756143,LOC107556076,LOC107588515 coding downstream 90124 25082913 ~ 25089706 (-)
LOC122360438 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 coding downstream 97053 25080457 ~ 25082777 (-)
oscp1b oscp1b,oscp1,LOC107588491,LOC107705542,LOC107704985,LOC107755648,LOC107700711 coding downstream 99525 25072879 ~ 25080305 (-)
pnp4b pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC108437351 coding upstream 3652 25194401 ~ 25200900 (-)
LOC122360868 efhb,LOC107671426 coding upstream 10202 25200951 ~ 25206208 (-)
LOC122360869 LOC107688204,LOC107569797,LOC107592108,LOC107716984 coding upstream 35408 25226157 ~ 25232002 (-)
LOC122360982 rab5ab,LOC107688205,LOC107707637,LOC107716989,LOC100701272,LOC103038585 coding upstream 103475 25294224 ~ 25299861 (-)
si:dkey-82o10.4 NA coding upstream 123305 25314054 ~ 25319078 (-)
G116242 NA non-coding downstream 1223 25177452 ~ 25178607 (-)
G116212 LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252 non-coding downstream 97234 25079267 ~ 25082596 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding downstream 344466 24835099 ~ 24835364 (-)
G116179 rab42 non-coding downstream 345872 24833536 ~ 24833958 (-)
G116174 NA non-coding downstream 356420 24821501 ~ 24823410 (-)
G116237 NA non-coding upstream 20644 25211393 ~ 25558018 (-)
G116264 NA non-coding upstream 503360 25694109 ~ 25695357 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding upstream 513951 25704700 ~ 25706796 (-)
G116282 NA non-coding upstream 585987 25776736 ~ 25778404 (-)
G116351 NA non-coding upstream 829776 26020525 ~ 26073006 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 706465 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 810264 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 840042 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1504485 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 1569989 23582993 ~ 23609841 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 473970 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1188923 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1230969 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1616371 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1619568 26810317 ~ 26812974 (-)

Expression



Co-expression Network