si:ch211-254p10.2 (LOC107685554,LOC107596717,LOC107752844,LOC102209663)


Basic Information

Item Value
gene id si:ch211-254p10.2
gene name LOC107685554,LOC107596717,LOC107752844,LOC102209663
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 12208105 ~ 12214349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260393.1
taataactcATTAAATACATGttgtttaaatctatttttactaCAATTTCTGGATTTAAACCCCATCGAGGTGATTGTAACACGCTGGTTCTGCTCCCGCAGGATGTCTCTCAGAACAGAGGGGGTTCAGTGCGGTGGTGTTGCTGTGGAGTTTGACGATGATAATGACAGAGATTCACCCGTCATCAAAGCCAGGAATATACCACGATCAGCCCTCATCTACCTCAAGGGCCCCAAGTTCCTCATCTATGTGAGCGGAGCGTTATCTATGTGGGGTGATCGCATGTGGCATTTTGCCATCTCTGTCTTCCTGATTGAGCTGTATGGGCATAACCTGCTGTTAACTGGCATCTTTGGACTGGTGGTGGCCGGATCGGTGCTTTTGTTAGGGGCTTTGATCGGAGACTGGGTTGACCGCAACCCGAGAAACAAAGTGGCCCACGCTTCCCTATTTATTCAGAATATCTCAGTGACCGTCTGCAGCATCGTGCTCATGTTGGTGTTCTCGTACAAAAAGTGGATTGAGGAGATCTGGGATGGGTGGCTAACCGTGGTTTGTTATACGGTGGTGATCGTCCTGGCAGATGTAGCGAACCTCGCCAGCACAGCTCTCACCATTGCCATCCAGAGAGACTGGATAGTGGTGATCACAGGCTACAACCGCGGTCATCTCGCAGGAATGAACGCTACAATGAGGCGGATCGATCAGGTGACCAACATCCTGGCTCCACTGGCGGTGGGTCAGGTAATGACCCTGGCCTCTAATGTGGTTGGCTGTGGCTTCATCTTAGGATGGAATCTGGTGTCCCTCATTGTAGAGTTCATCTTCCTCTCCAGAGTCTACCGGATCGTACCAGCGCTGTCCGTCAAACCACCGGCTATGGAACATCAAAGCTATTTAGAGaagaaaagggaaagaaaacGTTCACAAGGCAGGACCTCAGCACGTCCAGCTGCTGCCGTCTCAGAGGACAGCACCAGCCTGCATTTACAAGAAATAAGGCGAATACCAGCGTGCCTCCATCGGCTGCGCGGGCTCCTCAGCACCTGCCAGGAAGGGTGGAGGGCGTATTACAGACAGCCCGTGTTCCTCGCCGGCCTGGGCCTGGCCTTCCTTTACACCACGGTGCTGGGCTTCGACTGCATCACCACCGGCTACGCTTACACCCAGGGCATCAGCGGCTCGCTGCTCAGCATTCTGATGGGCGTGTCTGCTGTGGCGGGGCTTCTGGGTACCGTGCTTTTCACAAAGCTGCGCAAAGCATGTGGCCTGGTCAACACTGGGGTCATTTCCAGCGCTCTGCACCTAGTTTGCCTGTTGCTTTGTTTGTGCTCCGTGTTTGCCCCCGGCAGCCCCATGGACCTCAGCGTGCTAAATATGGGGAATGCGTCAGATGTGGGAGGGATGACCGGAGGTCACCAGAGGCACGGATACCCGCTGCGTGGAGGCAGCAACCAGCCCCTGCTGCCAGACCGTTCCTCCATTCACTGGACCAATAACACTGTGCTATTTGAGAACGCGCCAGCAGGGACTGAACCGGAGTCTTACGTCTCCATCATCCTGCTGTTCCTTGGAGTCATTACAGCTCGAGTTGgCCTCTGGTCCTTTGACCTGACAGTGACTCAGCTCTTACAGGAGACCATATGTGAATCAGAGCGTGGGGTGGTGAACGGAGTCCAGAGCTCCATGAACTACCTGATGGACCTGCTGCACTTCATCATGGTCATCTCTGCACCCCAGCCGCAACACTTCGGCATCCTTGTCATCATCTCCATCCTCTTCATTTTCACGGGACACACCATGTACTTCCTGTACGCCAGGAAAGTCAAGAAGAAACCTCGCACAAACACATAAGCAACGCGGATCTCTCTTGAATGTGCCTCGATCCCTGCACTTACGCGAAACGCACTGTATCCAGCTCAGTACatggaaaaatgaaaagctgtcGCCGCGATCTCTTCGGAAGAAAGAAAGGGTTTGGCAGCAGCGTAGTACTCAGGTGAACATAATCAGGAAACAGCGTCTCCTGTTGACAGTCAAAAGAAAACACCACCATAATAAACGTAGAGAGCCAAGCTTTCCTGGAAGTTAATGAGTGTCTTAAAACGCAGACTATTACAAGAAGTACATAACTCGACATGGCTGACGCAACACGTTTTCGTGGATTATTAGCTAAGTAAACGAcgcctttttttttatcttctcaCATCTGTCAGCTCAACAGAAACCAGTAACGAACGCCAGTAAATGTCTTCTTTGAATGAACTCCAGTAAAGGTCTCAAATTGGTACTCAGCACACCAACTAAAAACCTCGTCCAACAGGCAAAAGCTGCTTTTAACAGCATGTAAGGGGAATAGCTCTTTTATCATTTGTGCTTTTGACTGACTGATTAATCTTTTAGCTTTTATCCCTAACTTTTCAAGTGAAAAATTAGTGAGTTTTAACAAGACCGTGGACTGTATCCGTTCCCCGTTTATATATTGTGTCAAGGTCTTTTAATTGACCACTTTAACTGAGTGTTACTTTTGAGTTCGaagtaaatgaagacagaatcTTATACCTCAGCACTTAACTGTTATGTTCTGAACTCTAGCTTGAACGTATTTGTGGACAGTGAATACAGAAGTAATGGTTAACATATATGTACAGTACTCAGACTGCATCGCATCTGTTTCGATTGTGTTAATAATCTATTTTATGGGTtatg

Function

NR:

description
PREDICTED: solute carrier family 40 member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260393.1 True 2710 mRNA 0.49 8 12208105 12214349

Neighbor

gene id symbol gene type direction distance location
rapgef5b LOC107596719,LOC107685551,LOC107581543,LOC107728526,LOC107674937,LOC107743169 coding downstream 5017 12155770 ~ 12203088 (-)
sp8b sp8b,LOC107685617,LOC107596752,LOC107728520,LOC107743231,LOC107684564,LOC101158882 coding downstream 167158 12035907 ~ 12040947 (-)
macc1 LOC107743168,LOC107685548,LOC107596642,LOC107728525,LOC107684550,LOC107550840 coding downstream 195161 12007457 ~ 12012944 (-)
tmem196b tmem196b,LOC107596721,LOC107685588,LOC107728522,LOC107684562,LOC107550817 coding downstream 207198 11999570 ~ 12000907 (-)
twist1b twist1b,twist1,LOC107684561,LOC107596643,LOC107728521,LOC107550839 coding downstream 220655 11985634 ~ 11987450 (-)
slc6a19b slc6a19b,LOC107743232,LOC107662664,LOC107685553,LOC107596751,LOC105905464 coding upstream 2507 12216856 ~ 12226949 (-)
LOC122360649 NA coding upstream 178418 12392767 ~ 12397250 (-)
LOC122360109 NA coding upstream 204769 12419118 ~ 12422119 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding upstream 277149 12491498 ~ 12497557 (-)
setd2 LOC107743179,LOC107685560,LOC107752833,LOC107673014,LOC107581536,LOC107596709 coding upstream 363512 12577861 ~ 12599994 (-)
G111716 NA non-coding downstream 57228 12150542 ~ 12150877 (-)
G111713 NA non-coding downstream 68575 12139177 ~ 12139530 (-)
G111712 NA non-coding downstream 70333 12137461 ~ 12137772 (-)
G111690 NA non-coding downstream 127252 12080652 ~ 12080853 (-)
G111689 NA non-coding downstream 131098 12076453 ~ 12077007 (-)
G111788 NA non-coding upstream 223076 12437425 ~ 12439653 (-)
G111789 LOC107662667,LOC107752837,LOC107581613,LOC107581612 non-coding upstream 225437 12439786 ~ 12440874 (-)
G111791 NA non-coding upstream 227604 12441953 ~ 12442613 (-)
G111806 NA non-coding upstream 265085 12479434 ~ 12479788 (-)
G111807 si:ch211-257p13.3,LOC107752836,LOC107581541,LOC107685558,LOC107596636,LOC107673049,LOC107743172 non-coding upstream 266375 12480724 ~ 12480975 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 340790 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 796328 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 821112 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 921673 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 1324681 10857520 ~ 10883424 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 149436 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 1439711 13654060 ~ 13683909 (-)
G112478 NA other upstream 2020205 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2283914 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 2368130 14582479 ~ 14587869 (-)

Expression


Co-expression Network