LOC122360076 (slc6a20,LOC106605517,LOC106579373)


Basic Information

Item Value
gene id LOC122360076
gene name slc6a20,LOC106605517,LOC106579373
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27538393 ~ 27558972 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260399.1
CCTCCTCCGGCTTCAGGAGAAAACTCCCACTTCTCTCTGAGCTCAGATCGCTGGACTTTGAAATATTCCCAGACTCTCCTGGGATTTGTGCGTTTAGACGGCACGCCGATTGTTTGTCCCTTCAGATCGAGTCGAAGGACATTAGCATCATCATGAGTAAAGAAGCCCGTCCGTCCTGGGACAGTCCCATGCAGTTTGTCCTGGCGTGCGTGTCTTATGCCGTGGGACTCGGGAACGTCTGGCGCTTTCCGTATCTCTGCCAAATGCATGGAGGAGGTGGTTTTCTGATCCCGTATCTGCTGATGTTGTTTCTGGAGGGGATTCCTCTCTTCTGTATGGAGCTGGCCATCGGTCAGAAGATGCGTCTGGGCAGCATCGGCGCATGGACGGCCATCAGCCCGTATCTGGGCGGACTGGGCATTGCCAGCGTTGTGACCTCCATGTATCTGTGTCTGTACTACAACGTCATCAACGCCTGGAGCTTCTGGTATCTCTTCCATTCATTTCAGTCGGTGCTGCCGTGGGCCGAGTGTCCCGTCAATGCGAACCGCACCGGGTATCTGGAGGAGTGCGAGGTGGCTTCGCCAACACAGTACTTCTTCTACCGCCAAACACTGAACATCTCGTCGTCCATCGATGAGAACGGAGGACTTCACATGGGTCAGGCGCTCTGTCTGCTGCTGGCCTGGATCATCGTCTACCTCTTCATCGTCAGAGGCGTCAAATCCACCGGCGTGGTGGTGTATTTCACCGCTACGTTTCCGTACGTGGTTCTGATCATTTATCTGATCCGTGGAGTCACTCTACATGGAGCCTGGAACGGAATCAAGTACATGTTCACTCCTAAAcTGGAGCAGCTGGCGAATCCTCAGACGTGGATCAACGCAGCGACTCAGATCTTCTTCTCTCTGGGTCTGGGCTTCGGTTCTCTGATAGCCTTCTCCAGTTATAATCATCATAATAATGACTTTGAGAAGCAGGCGGTGGTGGTGTCTCTCATCAACAGCGGCACGTCTGTGTTCGCCAGCATCGTCACCTTCTCCATCTACGGCTTCAAAGCCACCTTCAACTACGAGAGCTGTCTGGAAAGgacGAGGCTGCTGCTTCTCAACACGTTCGATCTGTCGGAGGAGTCAGCGTCGGGGAACGTGTCGGCCTGGATCCGTCATCTGAACATCACTGAGCCCGAGAGGTTTGCTGCCATCGCCTCAAAGATAGAGCTCTGCAGTCTGGAGGCCGAACTCGACACGGCGGTGGAGGGCACGGGTCTGGCGTTCATCGTGTACAGCGAGGCCATCAAGAACATGCCTCTGTCTCAGCTGTGGTCAGTGCTGTACTTCATCATGCTGCTGCTCTTAGGGATGGGGAGCATGCTGGGAAACGTCACGGCCATCATCACTCCGCTGTCAGACATCAAGCTCCTGTCACGCTTCCTCAGCGTCGAGACCATCAACGGTCTGGTTTGTCTTCTCTGTCTGCTGCTGGGTTTCGGTTTCGCCAGCCGTTCAGGAAACTACTGGTTCACCATCTTCAACGAATACGCCGCCACGCTGTCGCTGCTCTTCATCGTCTTCCTCGAGGTCATCAGTGTGTGTTATATCTACGGCCTGAGACGGTTCGAGAAGGACATCGAGGACATGCTGGGTCATCGGCCGAACTGGTACTGGAAGCTGATGTGGGCCGTGGTCAGTCCTCTGCTCCTCTTCAGCCTCTTCATCTTCTACATCATTAACTACATCCAGGGAGGCACGCCGACGTACCAGGCCTGGGATAAAGATCTGggccGGTCAGTGCTGAAGGAGTATCCGGTGTACGGTCAGGTGTTCATtgctctgctgctgctgtctgcTCTCAGCTGTGTGCCGCTCGCTGCTCTTCAGTCCTTCTGCAGGAGAAGACCTCTCCGTCCACGTCGTCACGTCTGACGCAAACGGCTGCGTTCATATTAATACATTCTCAGTTTTTGGGTCTCTCTCTATATTTCCTGATCAAATAATATCAGATTTTTCCTGTGAGCGTTTACGTATGATGCATTAGAATTCATATTCAAAGTTCAAATGCATTGTAATATTCAATGCATTATTCTTCCTATGTGTATGAATTATGATAATGTATTATACGTGAGATCGTGGATGCGTTGTAATGCATAAATCATGCATTGTATTCTATACAATAGCTTTATGTAAAGCGTTAACCTGCAAGAGTAAGTGTATTTATACGTCATATACAGCAGATGAATCTCTGAACTCTGAAGGGTACTGAGCGTGACTGACCGAGAATGTAAAACCGTGTAAATAACCTTTTACTGCGAAATTAATTTCgtattttgtcaaattaaattcttttatATGTCTTTGAAATGATCAGCGACTGTGATTTTTGACAGAAATATCAGTGAACTCGATGTAGCACTtgtgtatttgaaaatataata

Function

symbol description
slc6a20 Enables L-proline transmembrane transporter activity. Involved in L-proline import across plasma membrane and glycine transport. Part of apical plasma membrane. Implicated in iminoglycinuria.

NR:

description
PREDICTED: sodium- and chloride-dependent transporter XTRP3 isoform X1

GO: NA

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260399.1 True 2434 mRNA 0.50 11 27538393 27558972

Neighbor

gene id symbol gene type direction distance location
si:ch211-269k10.4 NA coding downstream 156604 27375901 ~ 27381789 (-)
brd9 brd9,LOC107754443,LOC107659091 coding downstream 280383 27242882 ~ 27258010 (-)
zdhhc11 NA coding downstream 295654 27229786 ~ 27242739 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding downstream 309825 27214090 ~ 27228568 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding downstream 334100 27180637 ~ 27204293 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding upstream 54801 27613773 ~ 27621631 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding upstream 69585 27628557 ~ 27630274 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 72794 27631766 ~ 27637531 (-)
LOC122360378 rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129 coding upstream 126295 27685267 ~ 27690120 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 131468 27690440 ~ 27693938 (-)
G116733 NA non-coding downstream 48714 27378560 ~ 27489679 (-)
G116727 NA non-coding downstream 59750 27438512 ~ 27478643 (-)
G116748 NA non-coding downstream 163226 27372529 ~ 27375167 (-)
G116730 NA non-coding downstream 167016 27367832 ~ 27371377 (-)
G116723 NA non-coding downstream 230172 27307776 ~ 27308221 (-)
LOC122360078 NA non-coding upstream 25682 27584654 ~ 27592026 (-)
G116812 NA non-coding upstream 49240 27608212 ~ 27608965 (-)
G116814 NA non-coding upstream 53096 27612068 ~ 27612500 (-)
G116833 NA non-coding upstream 117016 27675988 ~ 27677259 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 142154 27701126 ~ 27704934 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 177564 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 540034 26993974 ~ 26998359 (-)
G116677 NA other downstream 582559 26954220 ~ 26955834 (-)
G116668 NA other downstream 661783 26874398 ~ 26876610 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other downstream 725419 26810317 ~ 26812974 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other upstream 63657 27622629 ~ 27627660 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 148744 27707716 ~ 27804770 (-)
G116868 NA other upstream 404516 27963488 ~ 27964958 (-)

Expression


Co-expression Network