hoxa11b (hoxa11b,LOC107743198,LOC107596728,LOC107685585,LOC107744726,LOC107684537,LOC107550813)


Basic Information

Item Value
gene id hoxa11b
gene name hoxa11b,LOC107743198,LOC107596728,LOC107685585,LOC107744726,LOC107684537,LOC107550813
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11639005 ~ 11641509 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260440.1
ATGATGGATTTTGACGAGCGGGTACCCGTCGGGTCTAACATGTATCTGCCCGGCTGTGCTTATTACGTGTCTGGAACGGAATTTTCCAGCCTTCCTCCTTTTCTGCCCCAGACCCCGTCTTCGTGCCCCGTGACATACTCATACTCCACGTCCAGTCTGCCACAAGTTCAGACCGTTAGAGAGGTGTCTTTCAGGGACTATGCCATTGACGCGTCCAGCAAGTGGCACTCCAGGGGCAATCTGCCACACTGCTACGCGCCCGAGGACATGGTGCACAGGGACTGCCTGTCCAATCCTGGAACTCTGGGGGACATGCTGTCGAAAAATAACTCGGTTCTCTACCACTCCAACGCGAGCCACACGTCCAACGTGTACGGCGGCGTGGGGAGGAACGGGGTGCTTCCCCAAGCGTTTGACCAGTTTTTCGAGACCGCGTACGGGAACGTGGAAAATCAGCCGAGCGAGCAGCCGGTGGACAGAGCGAGCGGCAAGGCGCCTCCGCCCGCGGAAACGGGCGGCGACAGTTGTCGGGGAACCGAGGAGACGGAGCGCTGTGAGGAGACGAGCAGCCCGGAGCCATCTTCCGGTAACAACGAAGAGAAATTCAGCGGCGGCGGCAGCGGACAGAAGACGCGGAAAAAGAGGTGCCCTTACACAAAGTACCAGATCAGAGAGCTGGAGAGGGAGTTTTTCTTCAGCGTTTACatcaacaaagaaaaaaggctGCAGCTTTCCAGGATGCTCAACCTCACCGACCGTCAAGTGAAAATATGGTTTCAGAACAGGaggatgaaagagaaaaaactaaacagggACCGCTTGCAGTATTACACCACGAACCCTTTGCTCTAGATCGACTGAGGGGTCGTTCGGGCGAGATGGTTCGCTTCAAGTTCGTGGACGCACAGGAGGCGAGGAGCGACCTTCCTTCCTCGgagagacttttttttcatCGACGTGGGCCTAAACATAAACTTATACTCTCAGTAATCTCCACCGTttgaaattaaaactattattattattattattaatgccgTTGTTACTGTTATTACTGGTATTGTCATTTGCTGTTATTGCTTTCCCGTTCTTCTCAGTTTAGTGACTCTTCAGTTTACAgggatttgatttgattattttctttGCTATTACTATTATCTGACCAAGACCTGTACTTTCGCGTATGTTATAGCAGCAAGTAAGCTATAGGCTGTTCTTGAAATCTGTTATGTCTTCGGGGTTgggatagaaaaaaaaaactgtggagCTCGAGATATAAATGCTAAttgaaaaggtgtttttttttttactcctgtTAAATACTCCTACTTGTGGTTTATATCGTTGGACTTTGTTTCACTGAATAACGCACATTTCACGAATACAGCCTAAGCTTGTTGGCAACTAAACGCATCGCGCGCGCTATATTCTCTTATACTTGAACTGTGTGGACTGAAAGTGTATATTTGATATTAGGTGTCTTTGCTGCGCCTGTTTCCAGTAAAATCGGGCGACTTGAGCGTGTTTagaaatgtcataaaaaaaagagaaattcttatttatttttgacggACATTGGACATTAAGGCATAAGCAATAACCGAAGCGGCACGGACGCCGCTCGAGTCCTCTGAAAGCCCGAAGCGCGCTTCCTTCTTGATTTCCGTGTTTCCCTCACGTTTGCCGCGTGAAACTGTATATCGATGTTGCGGGAGCTCGTTCGTGTTCACGATAATCTCTCATGTTTATAACATCTCTTCGGCGTTATATAAATCAGTCTCTTGAAATa
>XM_043260441.1
ATGATGGATTTTGACGAGCGGGTACCCGTCGGGTCTAACATGTATCTGCCCGGCTGTGCTTATTACGTGTCTGGAACGGAATTTTCCAGCCTTCCTCCTTTTCTGCCCCAGACCCCGTCTTCGTGCCCCGTGACATACTCATACTCCACGTCCAGTCTGCCACAAGTTCAGACCGTTAGAGAGGTGTCTTTCAGGGACTATGCCATTGACGCGTCCAGCAAGTGGCACTCCAGGGGCAATCTGCCACACTGCTACGCGCCCGAGGACATGGTGCACAGGGACTGCCTGTCCAATCCTGGAACTCTGGGGGACATGCTGTCGAAAAATAACTCGGTTCTCTACCACTCCAACGCGAGCCACACGTCCAACGTGTACGGCGGCGTGGGGAGGAACGGGGTGCTTCCCCAAGCGTTTGACCAGTTTTTCGAGACCGCGTACGGGAACGTGGAAAATCAGCCGAGCGAGCAGCCGGTGGACAGAGCGAGCGGCAAGGCGCCTCCGCCCGCGGAAACGGGCGGCGACAGTTGTCGGGGAACCGAGGAGACGGAGCGCTGTGAGGAGACGAGCAGCCCGGAGCCATCTTCCGGCGGACAGAAGACGCGGAAAAAGAGGTGCCCTTACACAAAGTACCAGATCAGAGAGCTGGAGAGGGAGTTTTTCTTCAGCGTTTACatcaacaaagaaaaaaggctGCAGCTTTCCAGGATGCTCAACCTCACCGACCGTCAAGTGAAAATATGGTTTCAGAACAGGaggatgaaagagaaaaaactaaacagggACCGCTTGCAGTATTACACCACGAACCCTTTGCTCTAGATCGACTGAGGGGTCGTTCGGGCGAGATGGTTCGCTTCAAGTTCGTGGACGCACAGGAGGCGAGGAGCGACCTTCCTTCCTCGgagagacttttttttcatCGACGTGGGCCTAAACATAAACTTATACTCTCAGTAATCTCCACCGTttgaaattaaaactattattattattattattaatgccgTTGTTACTGTTATTACTGGTATTGTCATTTGCTGTTATTGCTTTCCCGTTCTTCTCAGTTTAGTGACTCTTCAGTTTACAgggatttgatttgattattttctttGCTATTACTATTATCTGACCAAGACCTGTACTTTCGCGTATGTTATAGCAGCAAGTAAGCTATAGGCTGTTCTTGAAATCTGTTATGTCTTCGGGGTTgggatagaaaaaaaaaactgtggagCTCGAGATATAAATGCTAAttgaaaaggtgtttttttttttactcctgtTAAATACTCCTACTTGTGGTTTATATCGTTGGACTTTGTTTCACTGAATAACGCACATTTCACGAATACAGCCTAAGCTTGTTGGCAACTAAACGCATCGCGCGCGCTATATTCTCTTATACTTGAACTGTGTGGACTGAAAGTGTATATTTGATATTAGGTGTCTTTGCTGCGCCTGTTTCCAGTAAAATCGGGCGACTTGAGCGTGTTTagaaatgtcataaaaaaaagagaaattcttatttatttttgacggACATTGGACATTAAGGCATAAGCAATAACCGAAGCGGCACGGACGCCGCTCGAGTCCTCTGAAAGCCCGAAGCGCGCTTCCTTCTTGATTTCCGTGTTTCCCTCACGTTTGCCGCGTGAAACTGTATATCGATGTTGCGGGAGCTCGTTCGTGTTCACGATAATCTCTCATGTTTATAACATCTCTTCGGCGTTATATAAATCAGTCTCTTGAAATa

Function

symbol description
hoxa11b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; chondroblast; mesenchyme; pectoral fin bud; and pectoral fin field. Human ortholog(s) of this gene implicated in radioulnar synostosis. Orthologous to human HOXA11 (homeobox A11).

NR:

description
homeobox protein Hox-A11b-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260440.1 True 1789 mRNA 0.48 2 11639005 11641509
XM_043260441.1 False 1756 mRNA 0.48 2 11639005 11641509

Neighbor

gene id symbol gene type direction distance location
hoxa10b hoxa10b,LOC107685613,LOC107743223,LOC107550811,LOC107744724,LOC107684558 coding downstream 2402 11633490 ~ 11636603 (-)
hoxa9b hoxa9b,LOC107743222,LOC107684557,LOC107744723,LOC107685612,LOC107550810,LOC107596757 coding downstream 5661 11629099 ~ 11633344 (-)
hoxa2b hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758 coding downstream 8100 11619513 ~ 11630905 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding downstream 24747 11598331 ~ 11614258 (-)
LOC122360822 LOC107596715 coding downstream 137792 11493099 ~ 11501213 (-)
hoxa13b hoxa13b,LOC107743224,LOC107685614,LOC107596755,LOC107744698,LOC107550814,LOC107684536 coding upstream 5341 11646850 ~ 11648869 (-)
hibadhb hibadhb,hibadh,LOC107685537,LOC107550829,LOC107744697,LOC107743154,LOC107684541,LOC108441516 coding upstream 11704 11653213 ~ 11662232 (-)
jazf1b jazf1,LOC572950,LOC107743157,LOC108441515,LOC107684540,LOC107550831,LOC107685586 coding upstream 45786 11687295 ~ 11704828 (-)
cpvl cpvl,LOC107743225,LOC107684544,LOC107745375,LOC107550833,LOC107685540,LOC107596754 coding upstream 133465 11774974 ~ 11779980 (-)
fkbp14 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding upstream 179278 11820787 ~ 11823551 (-)
LOC122361126 NA non-coding downstream 69268 11562878 ~ 11569737 (-)
G111516 NA non-coding downstream 94673 11543916 ~ 11544332 (-)
G111508 NA non-coding downstream 150178 11487682 ~ 11488827 (-)
LOC122360676 NA non-coding downstream 157778 11480106 ~ 11481227 (-)
G111453 NA non-coding downstream 372180 11266596 ~ 11266825 (-)
G111559 NA non-coding upstream 21409 11662918 ~ 11666274 (-)
G111623 NA non-coding upstream 132410 11773919 ~ 11774181 (-)
G111625 NA non-coding upstream 139278 11780787 ~ 11781172 (-)
LOC122360397 NA non-coding upstream 142186 11783695 ~ 11784334 (-)
G111639 NA non-coding upstream 176950 11818459 ~ 11819778 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 227228 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 252012 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 352573 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 755581 10857520 ~ 10883424 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 874700 10745576 ~ 10764305 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 224171 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 722276 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 2012551 13654060 ~ 13683909 (-)
G112478 NA other upstream 2593045 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2856754 14498263 ~ 14503136 (-)

Expression


Co-expression Network