G10080


Basic Information

Item Value
gene id G10080
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 15783238 ~ 15783518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU11105
GTAAATATCCTTATAATTAGAAAGTTGCTAATGCTAATAAAACAGATGAAACATGAGTGGATATATATATATATTTATTTCTGTACTTTCTTACCTTCATTCAGAGGTCTTGGCATTGATTTCTCAGTTCCTGCTTGGATGAAACAGACACAGCTTTCCATGAGGCCATGAACCGGAGGTCAGGTAATTTCAGAAGGCTTTTCAGATATTGCCATTTCCAACATCTGGAGGGACTGAAACAACACCTGCAGTCTTTTTACCCTTTTGCACTCCCTCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11105 True 281 lncRNA 0.38 1 15783238 15783518

Neighbor

gene id symbol gene type direction distance location
CI01000000_15684820_15696865 NA coding upstream 86123 15684495 ~ 15697115 (+)
CI01000000_15620007_15622711 PCDH11X coding upstream 160396 15620007 ~ 15622842 (+)
CI01000000_15519933_15528742 PCDH11X, PCDH11 coding upstream 254343 15519933 ~ 15528895 (+)
CI01000000_15158265_15165627 NA coding upstream 616966 15157022 ~ 15166585 (+)
CI01000000_15120586_15123050 TSC22D3, TSC22D3.L coding upstream 659590 15120384 ~ 15123648 (+)
CI01000000_15893372_15894283 NEUROG1 coding downstream 108161 15891679 ~ 15894893 (+)
CI01000000_15964514_15964804 NA coding downstream 180809 15964327 ~ 15964961 (+)
CI01000000_16011590_16014992 NA coding downstream 228072 16011590 ~ 16015151 (+)
CI01000000_16034357_16056363 SMAD5 coding downstream 250380 16033898 ~ 16056594 (+)
CI01000000_16066787_16081915 LMAN2 coding downstream 282791 16066309 ~ 16082483 (+)
G10153 NA non-coding upstream 3103 15779913 ~ 15780135 (+)
G10149 NA non-coding upstream 6321 15776574 ~ 15776917 (+)
G10117 NA non-coding upstream 38573 15744388 ~ 15744665 (+)
G10102 NA non-coding upstream 66210 15716617 ~ 15717028 (+)
G10062 NA non-coding upstream 310030 15472925 ~ 15473208 (+)
G10052 NA non-coding downstream 88883 15872401 ~ 15881522 (+)
G10200 NA non-coding downstream 146150 15929668 ~ 15929964 (+)
G10203 NA non-coding downstream 147742 15931260 ~ 15931467 (+)
G10185 NA non-coding downstream 149466 15932984 ~ 15933376 (+)
G10209 NA non-coding downstream 170281 15953799 ~ 15954449 (+)
G9201 NA other upstream 1548297 14215024 ~ 14234941 (+)
G7522 NA other upstream 3604230 12178369 ~ 12179008 (+)
G7514 NA other upstream 3646230 12136522 ~ 12137008 (+)
G7153 NA other upstream 4537605 11244457 ~ 11245633 (+)
G7018 NA other upstream 4802366 10978489 ~ 10980872 (+)
G10201 NA other downstream 146748 15930266 ~ 15930562 (+)
CI01000000_17339270_17345013 CXCL14, CXL14 other downstream 1555636 17339154 ~ 17346200 (+)
G11465 NA other downstream 2100435 17883953 ~ 17887462 (+)
G11521 NA other downstream 2249221 18032739 ~ 18164112 (+)
G11801 NA other downstream 2897349 18674116 ~ 18745376 (+)

Expression


Co-expression Network