cdc42l (cdc42l,LOC107552852,LOC108433756,LOC108272678,LOC105029961,LOC108443667)


Basic Information

Item Value
gene id cdc42l
gene name cdc42l,LOC107552852,LOC108433756,LOC108272678,LOC105029961,LOC108443667
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23169518 ~ 23175441 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260463.1
TAGTAAGAACTACAAGCAGTGTTGGGCGTGTGCGCCGGGTGGGCTGGCTGGATATCGCAGGAACTACGACGAGACGCTTTTTCGCTTTCATTCACGTCAGATTGATACTCTCAAACCCGGACGTAACCAACGCCTAGTCGCCGGAGAGGAACGaTGCAGACCATAAAGTGTGTGGTGGTTGGAGATGGAGCTGTCGGAAAGACCTGCCTCCTCATCTCATACACAACCAACAAATTCCCCTCTGAATATGTTCCCACGgtttttgataACTATGCTGTCACAGTGATGATTGGAGGTGAACCGTATACACTGGGGCTTTTTGACACAGCAGGTCAGGAAGACTACGACAGACTTCGGCCTCTAAGCTATCCACAGACAGACGTCTTCCTTGTTTGCTTCTCTGTTGTTTCTCCTTCCTCCTTTGAGAATGTAAAAGAGAAGTGGGTACCAGAGATCTCACACCACTGTCCACGCACTCCATTCCTTCTGGTGGGCACTCAGGTCGACCTGAGGGATGACAGTAACACTGTGGAAAAACTTGCCAAAAACAAGCAGCGCCCCATATCACCCGAGAGCGGGGAGAAGCTGGCCAGAGACCTCAGAGCCGTCAAATACGTGGAGTGCTCTGCCCTAACACAGAGAGGCCTGAAGAATGTATTTGACGAGGCGATACTCGCCGCCCTCGAACCTCCGGAGACCAAACCCAAGAAGCGCTGCGTCCTTTTGTAGGAACACAAGCAGTGGGTGATGCACTCACTCCAACAAGAGaggcaaagaaaaagaaacgttCTGGTGTGGGTTTTTAAAGGTTGGTAGGGCTTGGGGTCTGGAGTGGAGAGAGATAGAATTGGGAAAAAATTTGggaacaaaacagcaaaaaaaaacaaacaaaaaaacattatactgGAGGAATTTGGCAACACAAATGGTATTGCAAATGAATGCACACTGTGccttttataaatgtttctagAACAACAGAAGAAATTAGAGAACCCTGGAACCAATAACACCCCTGCAAACAAGCataacgataaaaaaaaaagatataggTGCACTTTATGCATGTGATATCTAGCAGAATAACATATAGATTCACTTTAATGCTTTAAGTGTCAGTTACATGTAATTGATCcaaaaaaatgtgacaaaatggCACAAATATGAGATTAAATGCTTCAGGTTTCTGATCAGCATCCAAAAcgatttttctgaaatgctttCGCAGGACAAACGCGTGTTTGTCTTTGACACATGCTTTCTCTAAGTCGCACAAGAATGGTTAGCACACAATGTCTATAAACAGCACATTTCATAAAGTGTAAAGCCGAACATGCTGACTGCTCTGATGAACACTTCTGCAGGGCTCAGCTATTTGCTCTGTAACCTGTGGATAGTGTGCGTGCAgaagctgatttcagctttctCGAATCTCCTCAGTTCAGCATTTTGGCCGCGTTGCAATATCGCAATTGGCACAAAAGCTATTCTTGACAGATTTGTCTTTTAGTGTTGTTATGGGGTCCGTTTTCccgtttttaatgttaatgttttgccAGTTCTAGAAGCTGGGCTCGCATGACAACTGTAGGCAGGTTCTGTTTTACATGTGGTTCACATACTGTTGTTTATACGTACTAGACTGGGTCTGGCACAAAAGCAAGCTAACGTGATTGGTTTGGGCATATGATTAGCTCTAATCACTGACAATGGCGCTGAACGGAACATATTCCAAAATAAACAGTAacaattttagatatttttacaatttaatgttGGATCAGAGTGTTATGGCCATAGAAATTACACTCTATGGCCACATCCCCTCCTGAGTGACCTGTGTTATATGGTTTATAAGAGAGTTTGGGACTTGAGGGGGAGCCAATGGATTTTAGTTCACAagcatttgttttttcctttatgAGCCAGACTGTTCTCTTCTTCTGTGGTTCATGCTCCTAGGATCTCTGTTAAGTGCATTTACTCTCGAGCCATGCAGTGCCTTCTGCTGGCCATTTagaaaactgaattttatttttttttttttttatttccttctctttttgttttgactttgagtatgatgtattaaatgtattactgttttactctTGGGTGAATGAATAGTGGTGACATTTTGAAacttgaggttttttttgtttgtttctttttttttttttttaaatgactttttattttattttttctagaGTACCATTtgattgtgatttattaataaaataacaatttgaaatgtaatattttgaataaccGATCTTAACAGTCGTGTGAATAAAAAGGAGGAGGATAAccaatgatgataatga

Function

symbol description
cdc42l Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within cell division and small GTPase mediated signal transduction. Predicted to be located in midbody and plasma membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

NR:

description
PREDICTED: cell division control protein 42 homolog

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04393 CDC42; cell division control protein 42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260463.1 True 2327 mRNA 0.41 6 23169518 23175441

Neighbor

gene id symbol gene type direction distance location
chd4b chd4,LOC107714608,LOC107724784,LOC107671917,LOC107704911 coding downstream 10616 23141067 ~ 23158902 (-)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803 coding downstream 30392 23122351 ~ 23139126 (-)
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding downstream 48309 23117498 ~ 23121209 (-)
LOC122360201 LOC107724792,LOC107552857 coding downstream 59635 23103170 ~ 23109883 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding downstream 66816 23097267 ~ 23102702 (-)
rbfox1l rbfox1l,LOC107704918,LOC107587790,LOC107714602,LOC107724799,LOC107552848,LOC107672019,LOC103045177,LOC108443663 coding upstream 34118 23209559 ~ 23221351 (-)
rap1gapl si:ch1073-90m23.1,LOC107724779,LOC107587789,LOC107672182,LOC107704921,LOC107714601 coding upstream 48629 23224070 ~ 23233788 (-)
styk1b LOC107587900,LOC107714598,LOC107724775,LOC107704922,LOC107672192,LOC107552846 coding upstream 68815 23244256 ~ 23249797 (-)
LOC122359973 LOC107672119,LOC107552844,LOC107704924,LOC107716832 coding upstream 76119 23251560 ~ 23254576 (-)
LOC122360080 NA coding upstream 82562 23258003 ~ 23261954 (-)
G115621 NA non-coding downstream 1578 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 91648 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 96068 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 112988 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 117243 23050307 ~ 23052275 (-)
G115631 NA non-coding upstream 9609 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 150767 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 640456 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 641459 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 645078 23820519 ~ 23822288 (-)
G115554 NA other downstream 235551 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 268331 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1080426 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1200983 21964855 ~ 21968535 (-)
G115149 NA other downstream 1365714 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 344367 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 407552 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 492624 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1142041 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1189199 24364640 ~ 24369566 (-)

Expression


Co-expression Network