p3h3 (p3h3,LOC107700158,LOC107724912)


Basic Information

Item Value
gene id p3h3
gene name p3h3,LOC107700158,LOC107724912
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13764004 ~ 13770786 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260503.1
TTCCCTCACTCCTCCTCCCTCTCCTCTTCTCACATCCCCTCTAGTACGGTCCCGCGCTATGGCGCTACGCTCAAACACTCCTGTATACGTGGCGtttctcttcctcctcagcCATGTCTTTCTGACTGCAGGCAGCGGACTGTCTTCGGAGAGTTCCTCCGGACTTTCAGCCCCGTACGACGAGCTCTACTACCGCGGGGTTCGGGCGTATTTTAAGGAGGACTGGGAGCGCGCAGCCGAGCTCCTGGAGAAATCCCTTTCCACGCGAGGCAAACTCCTGCAGACCAGACGAAGATGTCACGACGAGTGCTCAACAGCAGGAGATACCAAAATCCCCAAACTAGacaaaGCGGACTTTACTTTCTGGGACCTGGGGGTACTAGACTGGATCCAGGTGCGGGCTGAGTGTGTGAGGTTCTGCATGGGCCGAAGCATCTCGCCTGTTGTTCTGCTCCCAGTGTCTTCAGACATCGAGTATGAGTTCGGTACACGCAACCCTTACAACTACCTGCAAGTCACCTACTACAAGTTGGATAAAATGGCCAAAGCCGCTGCAGCTGCTCACACTTTCTTTGTGGCCAATCCGAGTCACCTGGAGATGAGGAACAACATTGAGAAGTACAGGAGACTGTTAGGAGTGAAAGAAGAGTCCTTCCAGGACAGAGAGAGCGAGCAGGAGCAACACTGGGAGATGTATGATGCAGCCGTTCTGGCTGAGAGCTCGTCTGATTGGATGAAGGCGGTGAAGGGGTGGAAGGAGTGTGTGAATGAGACGCTCAAGCAGACAGAAGAGTGCAGGGCTCAGTGTGTGATGACGTCCCGGGTCCTTCCAGAGGAGCCCGACACCGCTCGGGGCGTTTATGAGAGAGCTGCGGacctctctctctccttgctGTCATGCAAACAGATGTGTGTGACCTTAGTGTCGACGCGACCTGGAAGGGTCTCTGCTCTCGAGGACTTCCTGCCCTTGCAACTCGAGCACCTACATATCGCACAGTTCAAAGCTGGTGACCTGAAGGGGGCGGTGGAGACCCTGCGCTCTTTGCTGCTCTTCTACCCCACAGATTCAGACTCCCTTAGTAATCTGGAGCTCTACACTCAGACTCTAGAGGGAGACGCGGAGGCTCAGGAAACAGGCCCCATGCAGGAAATTGCCAAATATATCAGCAGAGCTTTGCAAGAGAAGAGACTGCTGTATTTTGGGATGGCAAACTTGGACTTTAAATTCAGTGACCCGGATCTGTGGACTCCCGAGGACATTGTGCCCGAATCCCTGCGAGAAACCTGGAGAgtagagaaagagaaacttCATGAGAAAATAAAGCAGGGAGAGAAAGTGGAAGAAGTGGATGAGAGTGGATTTTATGCAGGCGGTCCCGTTCCTGTGGTTGGTGTAACAGTCACTATGGATGATCAGGGGCTGAATGGCACCAACCGTGTGGTTCTGGATGGAGTTTTATCCCAGTCTGAATGCGATCGTGTGTTGCAGCTGGCTAACGTTGCTGCATCAGTGGGCGACGGTTATCGAGGGCGGCGTTCTCCTCACACGCCACACGAGAAGTTTGAGGGCTTGACTGTTCTGAGAGCACTTAAGTTGGCCCAAGATGGGCTGGTTAACCAATCAGATGCCAGGCTGTTACATAAGATGGGAGAGACTGTTAAAGTTCTGATGGACTCGTACTTCAGAAGTCACTCTGTTCTCTACTTTGCTTACACACACTTAGTGTGCCGCTCTGCCATCCCAGGCCATCAGGAGGGGCGTTCGGATCTTTCTCACCCAGTTCATGTGGATAACTGCATCCTGGAGCCAGAAACCAGGCAGTGTTGGAGAGAAGCTCCTGCTTTCACTCATAGAGATCTCAGTGCAGTTCTTTACCTGAATGATGATTTTAAAGGAGGTGAATTCTTTTTTGCTGACCGAGATGCCAAAACAGTCACTGCAAGGGTTAAGCCAAAATGCGGCCGACTGGTTGGATTTACATCAGGACCTGTCAATCCTCATGGTGTTACTGCAGTAACAGAGGGTCGAAGATGTGCTCTGGCGCTCTGGTTCACCACTGAGAAGCACCACAGAGATATGGAACGTGAAGAAGCTGAAGATTTATGGGCTGCGGATGGAAAGAGTGTAGTAAAAGAGGAGAAGGGCGACGGTGAGAGCGCCTTAAAAACCGCCCGCAGCGGAAGAAGCCAAGGCAAAGAGAGgagcaaagagagagaaagagtgacaGGCAGGCGGGATGAACTGTAAGAAAGACAGATGAACGAGCCAATCAGCAAAGAGACATCCAATGGACATCAAATGCCTCACTGCGTATTCACTGTCTCCTCATGGACACTAGTTTATATTTATCCCAGACTGTTCGACATGGTAATGTCTCTTTAAGTATGAGAGTGTGTGCTTGGGTTTTTGTCGGagtatgtttgttttgattttgtttaaatagatttttttttaaatccaaaaataaaaaagtggcGATGAGctatttaagga

Function

symbol description
p3h3 Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in axial mesoderm and axis. Orthologous to human P3H3 (prolyl 3-hydroxylase 3).

NR:

description
prolyl 3-hydroxylase 3-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0031418 L-ascorbic acid binding molecular_function

KEGG:

id description
K22460 P3H3; procollagen-proline 3-dioxygenase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260503.1 True 2497 mRNA 0.51 16 13764004 13770786

Neighbor

gene id symbol gene type direction distance location
gnb3a gnb3a,LOC107549492,LOC107672997,LOC108432288,LOC103042898,LOC102782474 coding downstream 3661 13753414 ~ 13760343 (-)
tpi1b tpi1,tpi1b,LOC107672981,LOC107724698,LOC107700200,LOC107744284 coding downstream 62261 13694759 ~ 13701743 (-)
si:dkey-26c10.5 LOC107549484,LOC107724725,LOC107700203,LOC107672979 coding downstream 85746 13673756 ~ 13678258 (-)
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383 coding downstream 159263 13592032 ~ 13604741 (-)
il11a NA coding downstream 190409 13565402 ~ 13573595 (-)
cxcr3.3 NA coding upstream 64734 13835520 ~ 13838704 (-)
cxcr3.2 LOC107700152,LOC107551671,LOC107717417,LOC107598452,LOC107671173,LOC107755594 coding upstream 70522 13841308 ~ 13844368 (-)
ceacam1 NA coding upstream 95594 13866380 ~ 13875529 (-)
LOC122360471 LOC107707784,LOC107580961 coding upstream 110372 13881158 ~ 13887518 (-)
LOC122360057 LOC107707784,LOC107580961 coding upstream 123829 13894615 ~ 13899815 (-)
G112385 NA non-coding downstream 27773 13648627 ~ 13736231 (-)
G112410 clstn3,LOC107744281,LOC107724674,LOC107700197,LOC102784285 non-coding downstream 29856 13733188 ~ 13734148 (-)
G112363 leng8,LOC107724921,LOC107700201,LOC107744285,LOC107672965,LOC107549486,LOC107598384 non-coding downstream 70041 13688506 ~ 13693963 (-)
G112390 NA non-coding downstream 104534 13659005 ~ 13659470 (-)
G112377 NA non-coding downstream 144668 13618687 ~ 13619336 (-)
G112369 NA non-coding upstream 6483 13777269 ~ 13778805 (-)
G112426 NA non-coding upstream 14229 13785015 ~ 13786453 (-)
G112447 NA non-coding upstream 130078 13900864 ~ 13901076 (-)
G112448 NA non-coding upstream 130351 13901137 ~ 13901613 (-)
G112449 NA non-coding upstream 138538 13909324 ~ 13909736 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 80095 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1385555 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1896689 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2352227 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2377011 11333175 ~ 11386993 (-)
G112478 NA other upstream 463768 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 727477 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 811693 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1128396 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 1137834 14908620 ~ 14913646 (-)

Expression


Co-expression Network