polr3c (polr3c,LOC107685575,LOC107743190,LOC107673034,LOC107707173)


Basic Information

Item Value
gene id polr3c
gene name polr3c,LOC107685575,LOC107743190,LOC107673034,LOC107707173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13042826 ~ 13048403 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260517.1
AGGATTCGTTCGCTGATCAGGCGTCACACTGGAACTCTACATGACCACGGAAATTCGCCAGTGCTGATCATTACACACCGCCTGAACAACACACGTGATATTACAAAGCGAGATTAAAACTGTAAACCCGTACAACTAGATACTTTTTAAAGATGACAGCGCAGGAGGTGCGTCTGTGTGGGCTGCTGCTGCAGGAGCACTTTGGAGATGTGGTGGAGAAAGTGGGCACTCATCTGATCCGCAGTGGAGTTCTGACATTGCGAGCGCTTGCCCATGAGACCAGACTTCCCCTCGACCTGGTCAAGAAGTCTCTGTGTGTGCTGATGCAGCATGGGATGTGTTTGTTCGGTGCCGGGCGTCGTGGTCCAGCGGGACCCGTGGAATACCGCGTCATCTGCGAGCGCATCCTACACATGCTCCGTTATCCGCGCTACATCTACACTGCCAAGAGTCTTTATGGAGACACAGGCGAGCTCATTGTGGAGGAGATTCTGCAGAGAGGACAGATGACTATGAGCAGCACAGTCAAGACCGTAGCTGACCGGCTGACCCACAATATGCCAGAGGGCCAGAGTATGGACTACAGTGAGGTTGTCTCTGCGTTTTCTCGGTTGGTGGAGACTCATTTCCTGCAGCGTTGTCCTCCAGCGGCCTCCTCGGGACCATCGAGCTCAGGAGCAGTCAACACTCCCCTTCCAGCGGCGACGCAGCCCACCGAACCAGAGGAACACCCAGAATGCTACAAACTACCCTATATCAATCTCACCGGTAAAGGAAAACGCAGGCGCTCGAGCGAGGATGGTGAAGCTGACCAGCGTACGGCAAAGAAAGCCAAAACAGACAATAGTGAGtgtGGTGACGAAGGGATCTATTGGCAGGTGAATTTTCAACGCTTTCACCTGCACTTCAGAGATCAGGCCATTATTAGTGCTGTTTCCTGTAAACTCGATCAGACCAGCAGCGAGATTGTTAGAACCATGTTGCGGATGAGTGAGGTTACAACGCCGGCTCACGCTGTTTTCACACAAGCCCTTTCGGCCAATGAGATTTTCAGATCTCTTCCATCCAGTTACAACATCGCCAGACCAATTTTAGACCAATACCTCACTCTGCTTGTGGATGATCCGATGGAATTTGTGGGGAAGACAGGTGACAGTGGAGGAGGAATGTATGTCGTCAATTTACATCGTGCCCTGGCTAACCTGGCAAGAGCTACCCTAGAGTCTGTGGTCCAAGAGAGGTTCGGTTCTCGCTCGGCTCGAATCTTTCGTCTGTTACTGCGAAAGCGGCACCTGGAGCAGAAGCAGGTGGAGGATTTTGCCATGGTTCCTGCCAAAGAGGCCAAAGACATGCTGTACACACTCCTGTCTGAGAACCTGGTCCAGCTCCAGGAAATCCCCAAAACGCCGGACTACGCCCCTTCTCGAACCTTTTACCTGTACACAGTTAATCAGCTGCCCACTGCCAGGCTACTTCTGCAACACTGCTACAAGACAGTTGGCAACCTGATCGAGAGACGGCTGTATGAGACCAAAGAGAACAAGCGCCTTTTGGAGAAGTCTCAGCGAATTGAGGCCATCCTGGCATCCCTGCAGGCCACAGGAGCCGAGGCGGCCCAGCTGACGGAGGTGGAGGAGATGATCACCGCTCCAGAACGACAGCAGCTCGAGTCTCTACGGCACCACATTAACAAGTTGGACTCCAGTGAAAATCAGGTGGATGAGACAATATTTCTTCTGGAATCCTACATTAACTCTACACAGGCCTCTCGCTGACCGTTTTTATACAACTTTAGGCTAGTTCTAAAAATTGCTGATGTTTGTTTGAAAAGAAATGGGTCGCTCAGagatgtttatttcttttgcgACACGGAGTGACTGATTTATATGACTGAGTATTTTGTGTAGCCTTGAgcaattttattttccacagaaaaaaataaagttgtaattctttta

Function

symbol description
polr3c Predicted to enable DNA-directed 5'-3' RNA polymerase activity and single-stranded DNA binding activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03023 RPC3, POLR3C; DNA-directed RNA polymerase III subunit RPC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260517.1 True 1958 mRNA 0.51 15 13042826 13048403

Neighbor

gene id symbol gene type direction distance location
deptor deptor,LOC107685573,LOC107673035,LOC107596624,LOC107743215 coding downstream 67032 12947950 ~ 12975794 (-)
col14a1a col14a1a,LOC107685600,LOC107707159,LOC107672958 coding downstream 98756 12839061 ~ 12944070 (-)
LOC122361014 mtbp,LOC107596625,LOC107685571,LOC107707175,LOC107673040 coding downstream 217265 12806228 ~ 12825561 (-)
setd2 LOC107743179,LOC107685560,LOC107752833,LOC107673014,LOC107581536,LOC107596709 coding downstream 442832 12577861 ~ 12599994 (-)
ccdc12 ccdc12,LOC107743233,LOC107752847,LOC107581540 coding downstream 545269 12491498 ~ 12497557 (-)
gba gba,LOC107743191,LOC107685577,LOC107673025,LOC107707168,LOC107598431,LOC107596705,LOC107598447 coding upstream 6994 13055397 ~ 13060927 (-)
dap3 dap3,LOC107685621,LOC107743192,LOC107707170,LOC107598433,LOC107673026 coding upstream 12632 13061035 ~ 13066879 (-)
rusc1 rusc1,LOC107743195,LOC107692542,LOC107596619,LOC107707166,LOC107598429 coding upstream 52455 13100858 ~ 13116095 (-)
fdps fdps,LOC107673012,LOC107692580 coding upstream 68074 13116477 ~ 13119873 (-)
LOC122359944 NA coding upstream 72463 13120866 ~ 13123887 (-)
G112229 NA non-coding downstream 16697 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 390420 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 430832 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 552706 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 555133 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 139516 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 165527 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 168800 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 240802 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 382741 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 664377 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1175511 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1631049 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1655833 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1756394 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 605657 13654060 ~ 13683909 (-)
G112478 NA other upstream 1186151 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1449860 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1534076 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1850779 14899182 ~ 14904907 (-)

Expression


Co-expression Network