fdps (fdps,LOC107673012,LOC107692580)


Basic Information

Item Value
gene id fdps
gene name fdps,LOC107673012,LOC107692580
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13116477 ~ 13119873 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260525.1
cagaaacaaacgtacaaaaaaactacaatatgTGGTACGCCTTCGAATTTTTGGGCCGTCTTGACTTTTCATGTTGCAGGTGaaataaaagcacacagaaaTGTGTGTGACAGTAGTCTAAGCAAGGACAGCTTCGTGATGGGTGACAGCAGGTGCAGTAACGGTGTCAAGATGTTGTCAGATGCTCAGCTCTTTGATTCAGAGTTTGAAAAGTTGGTGTCTGAACTTACAGAGCAGGACTTCACTGATCCAGTTCTCATTGATGCCCTCAACCGACTCAGAGAGGTGCTTCGGTACAATGCACCCGGAGGCAAGAGAAACAGAGGCTTGTCAGTGATTGGATCACTACGGGAGCTGGTCTCTCCCTCTGAACTGCCACCCGATGAAGTTCACAGAGCCCTTTTGGTCGGATGGTGCATTGAACTGCTTCAGGCGTTTTTCTTGGTGGCCGATGACATTATGGATGCATCCCTAACAAGAAGGGGTCAACCCTGTTGGTATAAGaaggaAGGTATTGGTCTGGATGCCATCAACGATGCTTTTCTCCTGGAGGGGGCAATCTACCGCCTTCTTCGCAGACATTGCAGAGGACAGCGCTACTATGTCCATCTGCTTGAGCTTTTTACTGAGACCTCATTCCAGACAGAGCTGGGTCAAGCTCTAGATCTGATGACGGCACCTCCACACAAAATTGACCTTGACCGCTTCACCATGGAGAGGTACAAAGCCATCGTGAAATACAAGACTGCATTCTACTCCTTTTATCTCCCCGTGGCCGCGGCCATGTACATGGCAGGGATTGAAAACGAGACCGAACACAACAATGCTAAAACAATTTTACTTGAGATGGGAGAGTTCTTTCAGATACAGGATGACTACCTGGATTGCTATGGTGACCCTGCAGTGACGGGAAAGATTGGCACGGATATCCAGGACAACAAATGCAGCTGGCTGGTGGTGACCGCGCTGGGCATCATGACACCTGAACAGAGGGCAGAACTAGAGGCGTGTTACGGACGTAGTGATGCTGAAAGTGTCGAACGGGTCAAGGCTTTGTACGATACTCTGGAAATGCCTATCCGATACCTTCAGCACGAGGAGGACAGCTATCGCCGGCTTCAAAAACTCATCCAGCTGCATGCCAAGAATCTGCCTCATGCCGTGTTTCTTAATTTTGCCAAGAAAATATATAAGAGAAACAAATAAGGTGTGGTTCAGAGAAACCAAAGGACTTCACAAATGGAGTTCAGCATTTTTAGACATGCAGGGTCAAATAAACATTGGCAGTGAGGGATTTTAGATGTTGAGTAAATAAGGAAACGGTAGGTTTTATCTGCACTTTAAATATGCTGTCAAGAGTTTAGTTATTTGTCATAATTATCTGTTTTCCCCAATTTTAGTCTTGCAGAAGAAATACAGTAGGCTGATTCAGAGGTCTACCACAAATAGCACACATAACACCTGCCAGTGTTTCTCTTGgggtatatatattttcatcagatttttgGACTGTTTTCTCAAGGTCTGTGGAtgtgaaaaaaagatgcatagattgaaataaataaattatatacaaaaaataaatattacgtGAATGAGAACGGA

Function

symbol description
fdps Predicted to enable dimethylallyltranstransferase activity and geranyltranstransferase activity. Predicted to be involved in farnesyl diphosphate biosynthetic process. Predicted to act upstream of or within isoprenoid biosynthetic process. Predicted to be active in cytoplasm. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human FDPS (farnesyl diphosphate synthase).

NR:

description
farnesyl pyrophosphate synthase-like

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00787 FDPS; farnesyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260525.1 True 1605 mRNA 0.45 10 13116477 13119873

Neighbor

gene id symbol gene type direction distance location
rusc1 rusc1,LOC107743195,LOC107692542,LOC107596619,LOC107707166,LOC107598429 coding downstream 382 13100858 ~ 13116095 (-)
dap3 dap3,LOC107685621,LOC107743192,LOC107707170,LOC107598433,LOC107673026 coding downstream 49598 13061035 ~ 13066879 (-)
gba gba,LOC107743191,LOC107685577,LOC107673025,LOC107707168,LOC107598431,LOC107596705,LOC107598447 coding downstream 55550 13055397 ~ 13060927 (-)
polr3c polr3c,LOC107685575,LOC107743190,LOC107673034,LOC107707173 coding downstream 68074 13042826 ~ 13048403 (-)
deptor deptor,LOC107685573,LOC107673035,LOC107596624,LOC107743215 coding downstream 140683 12947950 ~ 12975794 (-)
LOC122359944 NA coding upstream 993 13120866 ~ 13123887 (-)
LOC122359945 NA coding upstream 4475 13124348 ~ 13126202 (-)
si:ch211-149k23.9 si:ch211-149k23.9,LOC107673042,LOC107598426,LOC107549453,LOC107692544,LOC108437471,LOC102779492 coding upstream 16774 13136647 ~ 13143911 (-)
atg12 atg12,LOC107692547,LOC107673043 coding upstream 24176 13144049 ~ 13146414 (-)
grwd1 grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021 coding upstream 32476 13152349 ~ 13157873 (-)
G112229 NA non-coding downstream 90348 13024933 ~ 13026129 (-)
G111862 NA non-coding downstream 464071 12567205 ~ 12652406 (-)
G111860 NA non-coding downstream 504483 12557811 ~ 12611994 (-)
G111799 NA non-coding downstream 626357 12489782 ~ 12490120 (-)
G111809 NA non-coding downstream 628784 12486851 ~ 12487693 (-)
G112256 LOC107737914,LOC107549458,LOC107598419,LOC107673038,LOC107750018 non-coding upstream 68046 13187919 ~ 13200640 (-)
G112261 NA non-coding upstream 94057 13213930 ~ 13227818 (-)
G112260 NA non-coding upstream 97330 13217203 ~ 13249624 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding upstream 169332 13289205 ~ 13292423 (-)
G112315 NA non-coding upstream 311271 13431144 ~ 13434295 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 738028 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1249162 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 1704700 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 1729484 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 1830045 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 534187 13654060 ~ 13683909 (-)
G112478 NA other upstream 1114681 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1378390 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1462606 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1779309 14899182 ~ 14904907 (-)

Expression


Co-expression Network