cacng6b (cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398)


Basic Information

Item Value
gene id cacng6b
gene name cacng6b,LOC107549474,LOC107692568,LOC107724866,LOC107744303,LOC107672978,LOC107598398
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13473475 ~ 13485710 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260540.1
tccctccttctcctcctctctcagcTGAGTTTCATGTATCTAGTCATCagatctgcacacacacagaacaggttCATCAAAAAGAGGAACGCTTCGTTTCGTGGCTCTTTAAGGCCTCAATCCAGCGTCTCTCATCGAGTCGTTCTTTTCATCTACCCATTATTCCTGTCTAGTTTCTTATCAAACCGTCTCTCGTTTGTAGACGTCAGTTAATTCCCACTCGGCGCTCTTCAGAAATGACCCCCTGTCACTTGAATTTCTCGCACGCTGGATTCCTTTTAAATCACAGAACATTGTAATTCGCTATCATTTCCTGTTCCTTTTTGAGCTTTCTATTAATACACTTCTCTGCGTTCTCATTATCTGTCCGTCCGCCCCTCCAAATTCCAGACTAATCTCTCTAGTCTCTAGTCTTCAGTTATTTGTTTGTCCCCTTTCCTGACCTCGCCTCTTGGAGTTTTTCCCCTCATCTCCCAAGTATTGTGGCTGTTATGTGGTCCAACTTCTTTTTGCAGCAGGATGACGACGGGAGAGTGGGTACGGGGGCTTTGGGTGGAGTTGGTAAGAGCGGGCGCTCAGGTAAACGGTCGAGGCCCCCTCGAATGAGTGACAGCCAGGAAGGCAAGATCAAGCTGGCGTTTTTCATCGCTCTCATAGGCGTGACTCTGACCGTGCTTGGCATGGGCACGGAGTTCTGGGTGGAGCTATCCCAGCCAAAACACTTCAGGAACAACCAGACGTGTGAGATGGCACATTACGGCCTTTGGAAATCATGCGTTCGCACGCTATGGGTGACAGATATTgacccagagagagagagctgtggACCTGCAGAACTGCCTGGAGAATCAAACTGCACATTCTTTAAACTCTACACTTCTGGAGAGAATGCTGTCATATTTAAGAAAACGACAGAAAAAAGTTTGCATATAGCAGGTGCAATGTTGGCTTTGTTGAGTTTGTTTCTGATGATCATGGGCTCTGTGTGTATCACTATGTCTCTCAGTAAAAGCGTGCCCTTCTTCCTCAAGCCTGCTACCATCTGCTTCGTCTTCTCAGGTATCCTGGTCCTTCTGTCCATCATAGTTTTCCACCAGTCTGTGCTGGCGTTATTGGCAAGCGATCACAGTATCCCTCTCCATCACGAGTTGTCCTGGTCAGTGGCGTGTCTTGGCTCGGCTGGGGCCATTCTCATTTTTGGAGGGCTTATGTTCCTGTTGCTTTCTCTCCCCTACAACCCCCTGGAGAAATGTTTTCGTCAGCAGAGCAGTAGTGATGCCTAGCTGTCAGAGGACTGCCAGCGAGTTAAGTAGCACAAGATCTTTTAtactgttttgctgcttaatgttAGGAAGGACTCTCAAAAGCTAATGGTTTGCAATAACTAGCATTAGTCTGCTCATCGATAAAATGATAGACCTTAATGCTCATACACCGACTCTGAAATTTGTACTGATATTTCTACGATGGTTATGTACATAAAATCAGTGACCAACAGATCTGTTTACTGTCTTGAAAGGCTTCATTTACACAATATGCTGTTCAGTTATGcactgtctctttttttgcatttgtatagGAAACCTTATTGATTACAGACATATGCTGATTTATCAGGTATCTGTGGGTTGAaagtgttgatttttttaacacacCATCCTATCATTGCTGAAAGCCTGTTCAGACCAAGAAAGATAACTATATTAGTGTCACATaacattctgtttattataagaGCACACTGCAGTTTTTTGCCTAAATGCTGGAGGTCTTTAAATTTGAATGGGTTCTAATTGGCAGTCAGTGCTTTTATCATTCatcagatggaaaaaaaaatattatgaaaataattccATCAATGCTGTTTCTTTGTGGCATTTTCATTATAGCTACGGTGTGGACTTTTCTCATATAATTAGAATGACTATTAAAACTTGACAGGTGTAGTTGCCATTATAGTTACCGTCCTTGATGCGAACAGGCAGCTTCAATGCTGTTGGCTTAAACTTGGCATGTGATCTTCATTGACCAGAATTATGTTGTCAACCAGCTTAACTAGTCTTGGAACCAGCAAACTAGCATCACAACGTAATGGTGGTGACCAGCTACAGTGATCCCAAAAAGAAATCTatggatacatttaaaaaagtgtaaaaaagtatttttatatacttttttgaaTATAATTGGAATGTCTTTCTAccattttctttcaaatcaaTGCTTCTCAGTTTGTTGATTAACTGTAAAGTGAAATATTTGAGATCACTATGTTTTTTCTGCTTGGTTTTCAGTGAATAGCCATCAACCGACTAGATATCATGGATTTCGGTGCATAGATTTAATGGGatggtttattatttatataaatgtatattgatGCTTAATACTGCGCATACTGTACGAAAAATTATGTACGAAATTGATTGATGTGGATGATATTGGACCCACCGTTGAGCCACATTTCTATGTAAATactgtgtgtttatattgtgcTCCAGCTTTTCTTTATCCTTATCCTGAAGACCCTGTCCTTCACTgaactttcttcttctttctttcacgTCTGCTCTTCACTTGGTTGTTTGTGTCACTCTCTATTCGTCACGCTCTTTCTCGTTCGCCGGTTTTGCTTGAGGATTAAATCTCTTTCACCTAA

Function

symbol description
cacng6b Predicted to enable calcium channel regulator activity. Predicted to be involved in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of L-type voltage-gated calcium channel complex. Human ortholog(s) of this gene implicated in aspirin-induced respiratory disease. Orthologous to human CACNG6 (calcium voltage-gated channel auxiliary subunit gamma 6).

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-6 subunit

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260540.1 True 2659 mRNA 0.41 5 13473475 13485710

Neighbor

gene id symbol gene type direction distance location
pitpnc1b zgc:101640,LOC107692561,LOC107549471,LOC107737922,LOC107598395,LOC107672976,LOC107750023,LOC108437483 coding downstream 153712 13306028 ~ 13319763 (-)
josd2 josd2,LOC107549461,LOC107750011,LOC107737925,LOC107598457,LOC107692554,LOC107672995 coding downstream 268878 13201382 ~ 13204597 (-)
flcn flcn,LOC107549459,LOC107692552,LOC107750008,LOC107673020,LOC107598420 coding downstream 302491 13162930 ~ 13170984 (-)
zgc:174888 LOC107549460,LOC107750007,LOC107598425,LOC107692550,LOC107673023,LOC107737913 coding downstream 310691 13158802 ~ 13162784 (-)
grwd1 grwd1,LOC107692548,LOC107549456,LOC107750005,LOC107737912,LOC107598422,LOC107673021 coding downstream 315602 13152349 ~ 13157873 (-)
u2af2a LOC107692567,LOC107672971,LOC107724853,LOC107598390 coding upstream 1641 13487351 ~ 13494251 (-)
epn1a epn1,LOC107672968,LOC107598387,LOC107724817,LOC107744298 coding upstream 20921 13506631 ~ 13516502 (-)
aicda aicda,LOC107549448,LOC107692585,LOC107724977,LOC107744312,LOC107598400,LOC107672983 coding upstream 60570 13546280 ~ 13548312 (-)
nat14 nat14,LOC107724968,LOC107549449,LOC107744294,LOC107692586,LOC107672977,LOC107598397 coding upstream 66830 13552540 ~ 13555963 (-)
znf628 LOC107724809,LOC107549478,LOC107744293,LOC107598382,LOC107672962,LOC107692578 coding upstream 70540 13556250 ~ 13564227 (-)
G112327 NA non-coding downstream 1789 13449507 ~ 13471686 (-)
G112339 NA non-coding downstream 11750 13455557 ~ 13461725 (-)
G112336 cacng7b,LOC107724890,LOC107549472,LOC107598394,LOC107672975,LOC106570002,LOC105902015 non-coding downstream 26297 13440670 ~ 13447178 (-)
G112315 NA non-coding downstream 39180 13431144 ~ 13434295 (-)
G112299 LOC107750016,LOC107549467,LOC107692576 non-coding downstream 181052 13289205 ~ 13292423 (-)
G112350 NA non-coding upstream 49011 13534721 ~ 13543311 (-)
G112361 NA non-coding upstream 120921 13606631 ~ 13609334 (-)
G112377 NA non-coding upstream 132977 13618687 ~ 13619336 (-)
G112385 NA non-coding upstream 162917 13648627 ~ 13736231 (-)
G112390 NA non-coding upstream 173295 13659005 ~ 13659470 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1095026 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1606160 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2061698 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2086482 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 2187043 11269620 ~ 11286432 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 168350 13654060 ~ 13683909 (-)
G112478 NA other upstream 748844 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 1012553 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 1096769 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1413472 14899182 ~ 14904907 (-)

Expression


Co-expression Network