LOC122360169


Basic Information

Item Value
gene id LOC122360169
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14518061 ~ 14524116 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260558.1
ATTGGTCTGAACATCTCAACTCTAGAAGCTGGAAGAAACGAGCTAAAGACGAGCTGATTCTGTTAAACCGAAGGGAAGATTAACAGCAACACAAAATGGCTGATAAGTGTCTTGTGTGTCTTCTAGGACTAATAACGCTCTACTCGCCTTTTACAGGGACCAGTGAAATGGATGACACTTATGTGTTCTACAGTTCTGGTGAAAATGTCCATCTGCCCtgtaaaaatgttctttctaAATGTACATCAACTACTTGGACCTAcagcaaacaatcaaatacAGTTGAACTGATTGCTGGAGGAATAAAGAAGAAAGACGTAGAGAGACATGAGAGACTGAGTCTGGGCTCTAACTGCTCTCTAAACATCCAGAAAATCACAGAAGAAGATAGTGGATTTTACAGCTGCCGACAATATTTGAATGGAGAACAAAAAGGAACCGATGCACTTGTTTTTCTGCATGTTCTTCAGGtctCTTCATCATCCTCTCAGTCTGAGATCAGTCCAGGCAGCTCTGTGACTCTTTTCTGTCAGTTGTTTTATGATCGAGTCTCTTGTGATGTTTTGGTCCGTGCTGAAGGAGTTGAACTGATCTGGGTGAATGAGTCCGGTGTGAATCTTCAGACAGACCCCAGATATAAGATATCATTCTCCTCAAAACACTGTAAAAGCTCTCTGACTACAAGACTCCTGAGTGAAGATCTCAACAGAGAGTGGACATGTCTGCTTACTCAGAGAAATGAAGTGAAGACCTCAGCcacatatattataaagtatttagGTGCAGAtaacacaacatcagaaatTGAAGTCAGTAAGACTGCTGGATTATCCTTCAGAGTGATTGTGATTATTGTTGAGGTTGCAGTGTTTGCTGCTCCTACTGTGATTCTTCTTCAGATCATCTGTGCAAGAAGAGCTGaaagaagaaagactCAGACCACCCAGAGGAAACAATGAtattagaaaagaaaatactcttttttacaaacaacatgaaagaaaacaaccaaatgatatttttatatatggaTATGCTAATTTTGGTCTGACATGTTTCAATAGAATgattcttaaaatgcattaatagttAACTATACACAGCTCCAAACTCAATGTACCTGTCCATTGTTTCTCTAAAAACTGATTTCTAATAAATCCATCCGGAGACATGTACCACA

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260558.1 True 1180 mRNA 0.39 7 14518061 14524116

Neighbor

gene id symbol gene type direction distance location
LOC122360167 NA coding downstream 2353 14510825 ~ 14515708 (-)
LOC122360168 NA coding downstream 9476 14506183 ~ 14508585 (-)
LOC122360687 LOC107717454,LOC107700162,LOC107573687,LOC107723374 coding downstream 34917 14476615 ~ 14483144 (-)
si:ch73-86n18.1 si:ch73-86n18.1,LOC107717455,LOC107700163,LOC107551672,LOC107723521,LOC107582056 coding downstream 41590 14473014 ~ 14476471 (-)
cops7a cops7a,LOC107717457,LOC107700164,LOC107582055,LOC107671210 coding downstream 45943 14464588 ~ 14472118 (-)
LOC122360164 NA coding upstream 2729 14526845 ~ 14533075 (-)
LOC122360165 NA coding upstream 16099 14540215 ~ 14544742 (-)
setdb1b LOC107573682,LOC107717459,LOC107582057,LOC107671207,LOC107723461,LOC107700161 coding upstream 20731 14544847 ~ 14557065 (-)
otoa otoa,LOC107700136,LOC107717411,LOC107671168 coding upstream 44198 14568314 ~ 14581242 (-)
il6r LOC107667704 coding upstream 119772 14643888 ~ 14650892 (-)
G112612 NA non-coding downstream 189858 14327952 ~ 14328203 (-)
G112483 NA non-coding downstream 214526 14303124 ~ 14303535 (-)
G112479 NA non-coding downstream 221489 14292739 ~ 14296572 (-)
G112474 NA non-coding downstream 307122 14210693 ~ 14210939 (-)
G112473 NA non-coding downstream 307528 14208396 ~ 14210533 (-)
G112659 NA non-coding upstream 67246 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding upstream 109098 14633214 ~ 14638332 (-)
G112686 NA non-coding upstream 191100 14715216 ~ 14715491 (-)
G113034 NA non-coding upstream 367924 14892040 ~ 14892395 (-)
G113039 NA non-coding upstream 422479 14946595 ~ 14947384 (-)
dicp3.3 NA other downstream 14925 14498263 ~ 14503136 (-)
G112478 NA other downstream 216442 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 834152 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2139612 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 2650746 11865680 ~ 11867315 (-)
LOC122359961 riiad1 other upstream 58363 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 375066 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 384504 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 446425 14970541 ~ 15015462 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 777758 15301874 ~ 15306611 (-)

Expression


Co-expression Network