LOC122360196


Basic Information

Item Value
gene id LOC122360196
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23089957 ~ 23096651 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260604.1
AAACAAATCTATGTTTTATCATGACTGTTGGACTCTTGCTCTGTCAGAGAGGCACTGCAAGTGTagccacaaaaaaacaaaaaaaaacagaaaatctctttataattttagttaaaaagaTTGACATCTGCATGTCTGCTCTGGCTGGAAAAGTTCTAATACTTTGCCTGCTGTGGGCATGTATGACTGCGTGCGAGTGTGAGCTGGCCATGTTTGGGGAGGTGTCTTCTCCACAGTACCCTCAACCATATCCGGGAGAAATCCTGGAGCAATGGGACCTGAAGGTGCCCGAGGGGTATCAGATCCAGCTGACTTTCACTCATCTGGATATTGAGCCCTCTCCAAACTGTGGTCATGATTCTCTCATTCTTGTGTCGGAAAAGAAGGTTCTGGGGAAGTTTTGTGGCCAGAGTTCTACAGACAGGTTCCACCCAGGAGACAAACCCATCGTTGTACCTGGCTGTGGAGCTCCAAAACCCCTGTTAAATGGAGGTGTTCGGTTTATCAATGGATCAGTCATTGAGTATTACTGCAATGAGCCATTCTACACATTTGAAGGAACCCCTAATGTAAGATATACTTGTACAGAAGACCAGAGATGGACAGCGGATGACAACAATGACAGCATTCCTCCTTGTGTTCCTGAATGTGGAAAGAACACAGAAGACCTTGGTGGAAGAATCTTTGGTGGGAAGCCAGCCAGATTGGGACAGATTCCCTGGCAACTCTTTCATAGGCAAAATCCCAGAGGTGGTGCATCTCTGATCAGTGATTACTGGGCCATTACAGCTGCTCAAATGGTAGACGGATTTGAAAACACCAACATGTCTTGGCTTGGAGGAATAATCAACAGTCAGGACGAAAACCCAGTCACTCTGAAGACTGAGAAGATTATAATTCACCCAAATTATCAGAGGGTTTCTTTATGTGGTAGTCAAGAAAACTATGATAATGACATTGCATTGATTAAAATGTCTGCTAGAGTCCCACTTGGTCCAAACATCAGGCCAGTGTGTCTGCCAAACAAAACAGATGAACCCGTGGAGGGCACAGTCTCAGGTTTTGGAAGATTTGAAAAAGGAATTAGTAAATATCTGCTTTATGGACATGTCCAGATACATCCACTTGATGAATGTAATTCAGTAGGTTTGCCTGTCACTGATAACATGATCTGTGCTGGAGGAGACGAAGTAGACAGTTGTCAGGGTGACAGTGGTGGTCCTTTGTTTTCTCCTGTTCTGGGCTATGGGTCTCCAGAAAGCCCCTATAGTCTTACAGGCATTGTATCATGGGGCCCTTCTGGATGTGGAAGATTTAGGGGCTACTATACTAGTCAAAACTACCTAGAGTGGATCAAGGAAACCatggaaaaaaactaacattggtggaaaaaaattatatttaccaAATTTCTCTCTGCTATATGGGCATCTGCTATTTGCATATATGGTTCAGCACTTGTAAACTTCAGTtaaaatccaataaaataatttccatAAACAGTATAAA

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0005579 membrane attack complex cellular_component
GO:0046930 pore complex cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260604.1 True 1509 mRNA 0.43 9 23089957 23096651

Neighbor

gene id symbol gene type direction distance location
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding downstream 363 23081229 ~ 23089594 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding downstream 17768 23064745 ~ 23072189 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding downstream 107066 22977925 ~ 22982891 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding downstream 160040 22915967 ~ 22929917 (-)
si:dkey-23o4.6 LOC107681430,LOC107705890,LOC107697223,LOC107756193,LOC107556114 coding downstream 274862 22812569 ~ 22815095 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding upstream 616 23097267 ~ 23102702 (-)
LOC122360201 LOC107724792,LOC107552857 coding upstream 6519 23103170 ~ 23109883 (-)
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding upstream 20847 23117498 ~ 23121209 (-)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803 coding upstream 25700 23122351 ~ 23139126 (-)
chd4b chd4,LOC107714608,LOC107724784,LOC107671917,LOC107704911 coding upstream 44416 23141067 ~ 23158902 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 12087 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 16507 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 33427 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 37682 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 40114 23049549 ~ 23049843 (-)
G115621 NA non-coding upstream 68542 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 88399 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 229557 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 719246 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 720249 23816900 ~ 23817100 (-)
G115554 NA other downstream 155990 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 188770 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1000865 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1121422 21964855 ~ 21968535 (-)
G115149 NA other downstream 1286153 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 423157 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 486342 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 571414 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1220831 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1267989 24364640 ~ 24369566 (-)

Expression


Co-expression Network