LOC122360198 (LOC107671893,LOC107724791,LOC107552796)


Basic Information

Item Value
gene id LOC122360198
gene name LOC107671893,LOC107724791,LOC107552796
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23097267 ~ 23102702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260608.1
TAGCCAAATCAAACAAGTTTACCTTTTTTGATGACTTTTAGACTTTTGTTCTCTCTTATGTGATTGTTAACCACATACTCTTTATCGCAAGAAAACCTCATGCAAACCTCATTGCATTAACAGTTTAGTCAAACCGCTAAAGTCATCTGCATATTTGTTATGGACAGAGTTCATCTAATAATCTGCCTGCTGTGggcatgtgtaaatgtgtgcgATGGTGAGCCAGCCATGTTTGGGGAGGTGTCTTCTCCACAGTACCCTCAACCCTATCCAGCAAACCTCCAGAAACAATGGGACCTGGAGGTGCCACAAGGCTACCAGCTCCAGCTGACGTTCAATCACCTTGACATTGAGTCCTCTCCAGACTGTTACTACGATTCTGTCACTGTTGTGTCTAGTGAGAAGGTTCTGGGGAAGTTCTGTGGCCAGAATTCCACAGACCGGCTCCATCCAGGAGACAAACCCATCTTGGCTCCTGGTAACCGCCTGCAGCTGATTTTTCAAACGGATGACTCAAATCACGAGTCACACTTGGGATTCACTGCATTCTACCAGGCTGTTGATATAGATGAGTGTTCCTCTTCCAATGTGGAAAATGGTTCACCATGTTCACAGATATGTCTTAACACCCTTGGCTCCTACCTGTGCGCCTGTTACCATGGTTACACATTACGGCCTGACCAACGCACCTGCGTCTTGGAGTGTGGAGGTGGGGTGCACAGTGAATTAGAGGGGACCATCTCGAGTCCTGGTTTCCCAGACACATCTCCTCTTGATCTGGACTGCATCTACACCATCTCTGTGCAGCCAGGCTTTATGATTACTCTGAACTTCAGCCAGAACTTCCACATAGAGCAGATCTACAGTCAAGGAGAGTCCTGCCTCTTCCATTGGCTGCAAGTGTCTGCCCAAGGAAAAGAGCCTCAAAAATACTGTGGAGGAAAAAGCCCTGGAGTCCTGAACACGGGCGCTCACTTAGTCCAGCTGGAGTATCACACCGATGGATACGGACAGAGCCAGGGGTGGAGTTTACGTTACACAACGCAGAgggTACAGTGTCCACATCCAGGCAGCATTGGCAATGGAACGGTCACTCCAAAATTTGCTCAGTACTTGTACAGAGACTACATTCATGTCCGCTGTAACCCAGGATACAAGCTAATGATGGGAGAGGAAGAGATTTCAGGTTTTAAGTCCATATGTGAGAGGAATGGTCAATGGCATTTGACACTGCCGGAGTGCAAGATTATTGACTGTGGAGCTCCAAAACCTCTGCTGAATGGAGTCTTTGAGCGTATCAGCGGAGAAAACAATGAATATCTTTCAGTCATAGAGTATCACTGCAATGAACCATACTACAGATTTCAAGATACTTCTAAAGTAACATACAACTGTGCAGTAGACCGAAAATGGACAGAAGTCAACAACAATGATGTTATTCCTCCTTGTTATCCTGtgtgtgGAAAGAATACAGAGGACTCTTTTGGTGGCAGAGTCTTTGGGGGGAAGTCAGCCAGATTGGGACAGATTCCCTGGCAGCTCTTTCATTCCAGTCCCAGAGGTGGTGCATCTCTGATCAATGATTACTGGGCCCTTACAGCTGCTCATGTGGTAGATGGACTTGAAAACACTAACATGACTTGGCTTGGaggaataaacaatattaaGGACAAAAACCCAGTCACCATGGAAGCCGAGAAGATTATAATTCACCCAAATTATCTGAGGGTTCCTGTGGGTGGTCATCAAACAAACTATAGTAATGACATTGCACTGATCAAAATGTCTGCTAGAGTCCCACTTGGTCCAAACATCAGGCCAGTGTGTCTGccaaacaaaacacatgaaCCTGTAATGGAGGGAAGGATGGGTACAGTATCAGGCTTTGGAGGGTTTGAGAGAAacattaaaagtgaaattttaCGTTATGGGCATATTCGGGAATATCTTTCTAAAGAGTGTGTTTTCGGGGATCTGCCTGTCACTCATAACATGTTCTGTGCTGGAGATGATGTTAACCATGTTGACAGTTGTCAAGGTGACAGTGGGGGTCCTCTATTCTTCCCGATGTTGGGCTATGGAACTAATGAGCAGCCCTACGAGGTCAGGGGTATTGTGTCATGGGGTCCTGCAAGATGTGGCCATGTTTCTAAAGGTTACTACACTAAAGTGCAGAACTACCTGGGTTGGATTGAAGAAACAATGGCAAATAATTAACAGCCGGTGTGCAACATGGTGAGAAagcttttgattaaaataagcccattttgtctgtttgtcttgtccagtttatataaatgtttcaaaattaaGCAAAGAGGATGATCTCATAACTTTGTATCGCTttgcagggggaaaaaaattaccCAAAGTCTCAACTGGTTATGTAACTGACTTTGCAATTATCATTCATCATCAAAGCAAGGGATTCTTATATGCTACACATGTCAGATTATCTCTTTTGTATTCATATtgcatgtaattaatattttcacacaccACCTTCTGCAGcctaataataaatgattgtaaagtatacaatatgctaatgttgtCCTCTggaagacaataaaaataaataaataacaaacctCTCactgaa

Function

NR:

description
PREDICTED: complement C1r-A subcomponent-like

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260608.1 True 2602 mRNA 0.44 11 23097267 23102702

Neighbor

gene id symbol gene type direction distance location
LOC122360196 NA coding downstream 616 23089957 ~ 23096651 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding downstream 7673 23081229 ~ 23089594 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding downstream 25078 23064745 ~ 23072189 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding downstream 114376 22977925 ~ 22982891 (-)
LOC122359864 LOC107705376,LOC107704993,LOC107755727,LOC107700703 coding downstream 167350 22915967 ~ 22929917 (-)
LOC122360201 LOC107724792,LOC107552857 coding upstream 468 23103170 ~ 23109883 (-)
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding upstream 14796 23117498 ~ 23121209 (-)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803 coding upstream 19649 23122351 ~ 23139126 (-)
chd4b chd4,LOC107714608,LOC107724784,LOC107671917,LOC107704911 coding upstream 38365 23141067 ~ 23158902 (-)
cdc42l cdc42l,LOC107552852,LOC108433756,LOC108272678,LOC105029961,LOC108443667 coding upstream 66816 23169518 ~ 23175441 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 19397 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 23817 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 40737 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 44992 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 47424 23049549 ~ 23049843 (-)
G115621 NA non-coding upstream 62491 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 82348 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 223506 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 713195 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 714198 23816900 ~ 23817100 (-)
G115554 NA other downstream 163300 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 196080 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1008175 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1128732 21964855 ~ 21968535 (-)
G115149 NA other downstream 1293463 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 417106 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 480291 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 565363 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1214780 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1261938 24364640 ~ 24369566 (-)

Expression


Co-expression Network