LOC122360201 (LOC107724792,LOC107552857)


Basic Information

Item Value
gene id LOC122360201
gene name LOC107724792,LOC107552857
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23103170 ~ 23109883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260610.1
ACACTGCAGTACCATCACGGGGAAAAGAGGGCTGGACATGATGATGCACGAAGAGCATGAAAGTGAAAGTGCAGAAGGAGAGGGCGGGCTGCGTTTTAACACTTGTAATCATGATTGTTTTTTgTGTTATTGTCCTCCTTCTTCCTGTGTGTGGGTCAGTGGCTTTGGCTGGATGGGTGCAGTCACCTGGATATCCACGAGGGTACGAGCCCCATTCTAACATGACCTGGAAAAAGTGTGCTACGACCGGACACAAAATCACGCTCACTCTCATACATTTGGACCTAGAAGAAAGCTTTGATTGCGAGGACGATGCCTTGAAGCTATTTGCAGATGAGATGCTTCTTTCAAATCTATGTGGACGGAAGTCCATGAAGGAGCTGCAGgcatctgtcaatcctttcctcCACTCTTCCTCTGGTGGTTGTCTCTCTATTTCCTTTCTTGCAGACTACTCGAAcagtgagagacacactggaTTTATAGGCTTTTACACAATACAGGATGTTAATGAGTGTATGGACCCTGAAAATGAGTGCACCCAACTCTGCAACAACTACATTGGAGGCTATCGCTGTTTCTGCAGGCCAGGTTACAACCTTGACTCTGATAAGCACACCTGCAAAGTGAGCTGCAGTGAAGATCGCACAGGGTCACAAGAAGGTGTGTTGTTGTCACCTGAGTGGCCTGAGCCGTACCCAGAAAACTCTTTGTGTTCTTACATTCTGGCCGTAGAAGAAGGTCTGCAGTTTGAGCTGACATTCACTGGAGTGTTTGATTtggagaagaaagagaatgGAGAATGCATCGACTCCTTAACCATAAAAACTCCCTTTGGTCACGTTGACACATTTTGCGAAAGGGATGTCCCTTCGTCCCTGCTCACAGGGTCTCAGCGTGTTGAGATTATCTTCAGGACAGACCATAAAGGAGCAAACCGAGGTTTTAACCtctattacaaaacaaaagTAATGAAATGTACTGGACCTGTGACACCAAAATCTAGTCTGAACCCGCAGCTTTTGGAATATTCCACAGGCGACAAAGTGACCGTGAAATGCGACAAAGGACATGTATTGAAATCACAGGTATCAGCTGAAGTTCAGTATAACGCCACATGCCAGAAGAATGGACAGTGGAGTCCTGTTATTCCCTGCGAACctGTGGATTGTGGCATTCCGGAGCTTCCTGAATTAATGGAGCTATCAGATGAAGATCCTTCAACAACGTATTTGAACCAGATCAGTCTTAAgtgtgcaaataaatattatcaaatgGATAATAATGGTAATTTTACCTGTAATGCTGAGGGTAAATGGGAGTCTGAGAGTGGTCAAAATGATTTGCCTAAATGTCAACCAGTGTGTGGAATTAATACAGAGGCCTCTTTTGATGGCAGAGTCTTTGGTGGGAAGCCAGCCAGATTGGGACAGATTCCCTGGCAGCTCCTTCATAGGCAAAATCCCAGAGGTGGTGCATCTCTGATCAGTGATTACTGGGCCCTTACAGCTGCTCACGTAGTGGATGGATATGAAAATGGGGCCATGAATTGGTTAGGTGGAATAATTGATGGTCAGGACAAAAACCCAGTCACTATTGAGACagaaaaaataatcattcatcCAGGATACCAAAAAGTAGGACTGgggaaaaaccaaacaaactatGATTATGACATCGCGCTAATCAAAATGTCTAAAAGAGTGTCTCTAGGTACAAACTTAAGGCCAGTGTGTCTGCCTAAGCAAGCAGATGAACCTGTGAAAGAGGGCACAGTCTCAGgttttggaatatttaaaagaaatacagtTAGTAGACGTCTGCTTTATGGACATGTCCAGATACATCCACTTGATGAATGTAATTCAGTAGGTTTGCCTGTCACTGATAATATGATCTGTGCTGGAGGAGACGAAGTAGACAGTTGTCAGGGTGATAGTGGTGGTCCTTTGTTTTCTCCTGTTCTGGGCTACGGGTCTCTAGAAAAGCCCTATAGTCTTACAGGCATTGTATCATGGGGCCCTTCTGGATGTGGGCATGAAGGCTTTAAAGGCTACTATACTAAAATCCAAAACTGCCTGGATTGGATCAAGGAAACCATGGAAAACAACTAATATGAAATCACTGAAATAATATACACCTACACCTGTTGTTAATTTTACCATCTGCTGTATCTGATTAACATATACCCATCTGCTATTTTCACATAATCACattgaattttaaaacttttgtaTTAAGTTGTTTTATACTAACCAGTAAAAGAGTTTACATTA

Function

NR:

description
PREDICTED: mannan-binding lectin serine protease 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260610.1 True 2276 mRNA 0.43 12 23103170 23109883

Neighbor

gene id symbol gene type direction distance location
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding downstream 468 23097267 ~ 23102702 (-)
LOC122360196 NA coding downstream 6519 23089957 ~ 23096651 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding downstream 13576 23081229 ~ 23089594 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding downstream 30981 23064745 ~ 23072189 (-)
LOC122359931 decr1,LOC107704989,LOC107705494,LOC107756153,LOC107700707 coding downstream 120279 22977925 ~ 22982891 (-)
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding upstream 7615 23117498 ~ 23121209 (-)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803 coding upstream 12468 23122351 ~ 23139126 (-)
chd4b chd4,LOC107714608,LOC107724784,LOC107671917,LOC107704911 coding upstream 31184 23141067 ~ 23158902 (-)
cdc42l cdc42l,LOC107552852,LOC108433756,LOC108272678,LOC105029961,LOC108443667 coding upstream 59635 23169518 ~ 23175441 (-)
rbfox1l rbfox1l,LOC107704918,LOC107587790,LOC107714602,LOC107724799,LOC107552848,LOC107672019,LOC103045177,LOC108443663 coding upstream 99676 23209559 ~ 23221351 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 25300 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 29720 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 46640 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 50895 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 53327 23049549 ~ 23049843 (-)
G115621 NA non-coding upstream 55310 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 75167 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 216325 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 706014 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 707017 23816900 ~ 23817100 (-)
G115554 NA other downstream 169203 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 201983 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1014078 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1134635 21964855 ~ 21968535 (-)
G115149 NA other downstream 1299366 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 409925 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 473110 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 558182 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1207599 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1254757 24364640 ~ 24369566 (-)

Expression


Co-expression Network