ptpn6 (ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803)


Basic Information

Item Value
gene id ptpn6
gene name ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23122351 ~ 23139126 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260611.1
ATGTTGAACAGGTGGTTCCACAGAGATCTGTCTGGATTAGATGCAGAGTCCGTTTTGAAGAGCCGAGGTGTCCATGGCAGCTTCCTGGCCCGACCGAGCAAGAAGAATGTGGGCGATTTCTCCTTGTCTGTTAGaGTGGGAGACATAATCACACACATTAGGATTCAGAACACGGGTGATTATTATGACCTGTATGGAGGGGAAAAGTTTGCGACGTTGGCCGAGTTGGTGGAATACTACACTGGAGATCATGGAACTCTACAAGATAAAGATGGAACCATTATTGAGCTCAAATACCCTTTAAACTGTTCTGATCCCACCACTGAGAGATGGTACCATGGCCACTTGTCAGGTCCAAATGCTGAAAAGCTGCTCCGAGAGCGTGATGAGCCCGGGACGTTCCTGGTGAGGGAGTCGCTCTCCAAACCGGGAGACTTTGTTCTGTCTGTGCTGACCGATGATTTGACCAGTTCTGGTAGGAGGGTCTCCCATATCAAGGTCATGTGCAACaatgaCCAGTACACAGTTGGCGGTAAAGAGATTTTTGACACTTTGACAGACCTTGTGGAGCATTTCAAGCGCACTGGTATTGAAGAGTTGTCTGGGACGATGGTTTACCTCAAACAGCCTTATTACTCCACAAGGTTGAACGCAGCTGATATTGAGAGCAGAGTAAAGCAGCTCGACCAGACTGCAGATAACATGGACGGGGccgataaaaaaataaaagctgggTTCTGGGAAGAGTTTGATGCGCTGCAGAAGATGGAAACTAAGGTAACGAAGAGCAGAGACGAAGGAATGAGACcggaaaacaaaagcaaaaacagatatAAGAACATCCTTCCCTtTGATGACACTAGGGTTACCCTGCAAAACGCAGATCCCAATGTTGTTGGCTCGGATTACATCAATGCCAACTACGTTATAAACAAATTAATGGATATTAGGTACCAGAAAGTTTACATTGCTTGTCAAGGCTGCCTCGCAACAACTGTAAATGATTTCTGGCAAATGGTATGGCAAGAAGAGACACGAGTAATCGTCATGACAACGAGGGAGGTTGAGAAAGGACGGAATAAGTGCGTGCCATACTGGCCTACTACTGAAGGAGAGTCAAAGGAAGTAGGCAGATACGTGGTGACGTTACACACTGAGAAGGATGCCACTGATTACAAGGTCAGAGTGATGGAGCTCAAAGCAACACACCGGAAAGAGCCACCTCGCACCATTTGGCACTACCAGTATTTGAGCTGGCCGGATCACGGCGTGCCACAAGAGCCCGGTGGAGTGCTTAGCTTTCTGGAGCAGGTCAATATTAAACAGCATGAACTGTCTTCGACTGGACCCATGATCATCCACTGCAGTGCTGGTATTGGGCGAACAGGAACCATTGTGGTAATCGACATGCTTATAGATAACATTGACGCTAAAGGTCTGGACTGTGACATCGACATCCAGAAATGTATTCAGATGGTTAGAGATCAGCGGTCTGGCATGGTGCAAACTGAAGCCCAGTACAAGTTCATCTACTTGGCTGTGCTGCAGTATATAGACTCAAGGACGGTCACACAAAGGGCTGTCATGGAAACAGAAACCGAATACGGAAACCTCTCAATTCAGCCTAAACACCAGAAGGCCAGCCGCAAAGCTTCAGCAAAaaaaaatgaAGACGTTTATGAGAATCTGGGAGCAAAGGGAAAGAAAGATGTCAAAAAGCAGAAATCGGAGGATAAGAAGGGTGGATCTGTCAGGAAACGATAAAcgtagataaaaagaaagatgaaatttaattttgctTCATGTTTGTAcagcttatttttaatttttttccgcggttttaaagaaaactgagCCAGCAATGCCAAAGTATTTGACCTTCTCAAACAAATCCTtctatgtttttgttaatatgtatttgttaattgtttaatatttagtacagcatttttaagtaaattcaCTAATTTGTAATTGATATCAATCATCCACTCGTTCtcagttttaataaaagttttgttcatGTCA
>XM_043260612.1
AACTAATGTACTTTAACTGTCAGCTTCGATGACACCCGGCCTGCAAAATCAGCCTGCAAGGAAAAAGGCATAAGTAAAAGATGATTAAcagggagaaaaagaaagattaaataaattcagaaagCCACTGGAGAGAAGCAGCAGTAAGAGAGGAAAAAGCCACAAAAAGGAAGGAAGAAGTTTGTAACATTGcatgagagagtgagagagagagagggagggacaTAAGACAGGCTTATATACACTGTCAGGACGACCTTGCTCTTCAAACCACCAAAAACTGTTTACATTTCGAGAGAGAGGAGAAGCACAGAGGGCAGAGGAACATTTGAAAAAGGAAGATGGTCCGGTGGTTCCACAGAGATCTGTCTGGATTAGATGCAGAGTCCGTTTTGAAGAGCCGAGGTGTCCATGGCAGCTTCCTGGCCCGACCGAGCAAGAAGAATGTGGGCGATTTCTCCTTGTCTGTTAGaGTGGGAGACATAATCACACACATTAGGATTCAGAACACGGGTGATTATTATGACCTGTATGGAGGGGAAAAGTTTGCGACGTTGGCCGAGTTGGTGGAATACTACACTGGAGATCATGGAACTCTACAAGATAAAGATGGAACCATTATTGAGCTCAAATACCCTTTAAACTGTTCTGATCCCACCACTGAGAGATGGTACCATGGCCACTTGTCAGGTCCAAATGCTGAAAAGCTGCTCCGAGAGCGTGATGAGCCCGGGACGTTCCTGGTGAGGGAGTCGCTCTCCAAACCGGGAGACTTTGTTCTGTCTGTGCTGACCGATGATTTGACCAGTTCTGGTAGGAGGGTCTCCCATATCAAGGTCATGTGCAACaatgaCCAGTACACAGTTGGCGGTAAAGAGATTTTTGACACTTTGACAGACCTTGTGGAGCATTTCAAGCGCACTGGTATTGAAGAGTTGTCTGGGACGATGGTTTACCTCAAACAGCCTTATTACTCCACAAGGTTGAACGCAGCTGATATTGAGAGCAGAGTAAAGCAGCTCGACCAGACTGCAGATAACATGGACGGGGccgataaaaaaataaaagctgggTTCTGGGAAGAGTTTGATGCGCTGCAGAAGATGGAAACTAAGGTAACGAAGAGCAGAGACGAAGGAATGAGACcggaaaacaaaagcaaaaacagatatAAGAACATCCTTCCCTtTGATGACACTAGGGTTACCCTGCAAAACGCAGATCCCAATGTTGTTGGCTCGGATTACATCAATGCCAACTACGTTATAAACAAATTAATGGATATTAGGTACCAGAAAGTTTACATTGCTTGTCAAGGCTGCCTCGCAACAACTGTAAATGATTTCTGGCAAATGGTATGGCAAGAAGAGACACGAGTAATCGTCATGACAACGAGGGAGGTTGAGAAAGGACGGAATAAGTGCGTGCCATACTGGCCTACTACTGAAGGAGAGTCAAAGGAAGTAGGCAGATACGTGGTGACGTTACACACTGAGAAGGATGCCACTGATTACAAGGTCAGAGTGATGGAGCTCAAAGCAACACACCGGAAAGAGCCACCTCGCACCATTTGGCACTACCAGTATTTGAGCTGGCCGGATCACGGCGTGCCACAAGAGCCCGGTGGAGTGCTTAGCTTTCTGGAGCAGGTCAATATTAAACAGCATGAACTGTCTTCGACTGGACCCATGATCATCCACTGCAGTGCTGGTATTGGGCGAACAGGAACCATTGTGGTAATCGACATGCTTATAGATAACATTGACGCTAAAGGTCTGGACTGTGACATCGACATCCAGAAATGTATTCAGATGGTTAGAGATCAGCGGTCTGGCATGGTGCAAACTGAAGCCCAGTACAAGTTCATCTACTTGGCTGTGCTGCAGTATATAGACTCAAGGACGGTCACACAAAGGGCTGTCATGGAAACAGAAACCGAATACGGAAACCTCTCAATTCAGCCTAAACACCAGAAGGCCAGCCGCAAAGCTTCAGCAAAaaaaaatgaAGACGTTTATGAGAATCTGGGAGCAAAGGGAAAGAAAGATGTCAAAAAGCAGAAATCGGAGGATAAGAAGGGTGGATCTGTCAGGAAACGATAAAcgtagataaaaagaaagatgaaatttaattttgctTCATGTTTGTAcagcttatttttaatttttttccgcggttttaaagaaaactgagCCAGCAATGCCAAAGTATTTGACCTTCTCAAACAAATCCTtctatgtttttgttaatatgtatttgttaattgtttaatatttagtacagcatttttaagtaaattcaCTAATTTGTAATTGATATCAATCATCCACTCGTTCtcagttttaataaaagttttgttcatGTCA
>XM_043260613.1
CGTTTTTGACGTACGGAACAAAAATGAATCTGACATCTATGTACCTTTCTCTACCTCTCTTGTTTGCTTTCACTGTTTTAAGAAAAAGCCACAAAAAGGAAGGAAGAAGTTTGTAACATTGcatgagagagtgagagagagagagggagggacaTAAGACAGGCTTATATACACTGTCAGGACGACCTTGCTCTTCAAACCACCAAAAACTGTTTACATTTCGAGAGAGAGGAGAAGCACAGAGGGCAGAGGAACATTTGAAAAAGGAAGATGGTCCGGTGGTTCCACAGAGATCTGTCTGGATTAGATGCAGAGTCCGTTTTGAAGAGCCGAGGTGTCCATGGCAGCTTCCTGGCCCGACCGAGCAAGAAGAATGTGGGCGATTTCTCCTTGTCTGTTAGaGTGGGAGACATAATCACACACATTAGGATTCAGAACACGGGTGATTATTATGACCTGTATGGAGGGGAAAAGTTTGCGACGTTGGCCGAGTTGGTGGAATACTACACTGGAGATCATGGAACTCTACAAGATAAAGATGGAACCATTATTGAGCTCAAATACCCTTTAAACTGTTCTGATCCCACCACTGAGAGATGGTACCATGGCCACTTGTCAGGTCCAAATGCTGAAAAGCTGCTCCGAGAGCGTGATGAGCCCGGGACGTTCCTGGTGAGGGAGTCGCTCTCCAAACCGGGAGACTTTGTTCTGTCTGTGCTGACCGATGATTTGACCAGTTCTGGTAGGAGGGTCTCCCATATCAAGGTCATGTGCAACaatgaCCAGTACACAGTTGGCGGTAAAGAGATTTTTGACACTTTGACAGACCTTGTGGAGCATTTCAAGCGCACTGGTATTGAAGAGTTGTCTGGGACGATGGTTTACCTCAAACAGCCTTATTACTCCACAAGGTTGAACGCAGCTGATATTGAGAGCAGAGTAAAGCAGCTCGACCAGACTGCAGATAACATGGACGGGGccgataaaaaaataaaagctgggTTCTGGGAAGAGTTTGATGCGCTGCAGAAGATGGAAACTAAGGTAACGAAGAGCAGAGACGAAGGAATGAGACcggaaaacaaaagcaaaaacagatatAAGAACATCCTTCCCTtTGATGACACTAGGGTTACCCTGCAAAACGCAGATCCCAATGTTGTTGGCTCGGATTACATCAATGCCAACTACGTTATAAACAAATTAATGGATATTAGGTACCAGAAAGTTTACATTGCTTGTCAAGGCTGCCTCGCAACAACTGTAAATGATTTCTGGCAAATGGTATGGCAAGAAGAGACACGAGTAATCGTCATGACAACGAGGGAGGTTGAGAAAGGACGGAATAAGTGCGTGCCATACTGGCCTACTACTGAAGGAGAGTCAAAGGAAGTAGGCAGATACGTGGTGACGTTACACACTGAGAAGGATGCCACTGATTACAAGGTCAGAGTGATGGAGCTCAAAGCAACACACCGGAAAGAGCCACCTCGCACCATTTGGCACTACCAGTATTTGAGCTGGCCGGATCACGGCGTGCCACAAGAGCCCGGTGGAGTGCTTAGCTTTCTGGAGCAGGTCAATATTAAACAGCATGAACTGTCTTCGACTGGACCCATGATCATCCACTGCAGTGCTGGTATTGGGCGAACAGGAACCATTGTGGTAATCGACATGCTTATAGATAACATTGACGCTAAAGGTCTGGACTGTGACATCGACATCCAGAAATGTATTCAGATGGTTAGAGATCAGCGGTCTGGCATGGTGCAAACTGAAGCCCAGTACAAGTTCATCTACTTGGCTGTGCTGCAGTATATAGACTCAAGGACGGTCACACAAAGGGCTGTCATGGAAACAGAAACCGAATACGGAAACCTCTCAATTCAGCCTAAACACCAGAAGGCCAGCCGCAAAGCTTCAGCAAAaaaaaatgaAGACGTTTATGAGAATCTGGGAGCAAAGGGAAAGAAAGATGTCAAAAAGCAGAAATCGGAGGATAAGAAGGGTGGATCTGTCAGGAAACGATAAAcgtagataaaaagaaagatgaaatttaattttgctTCATGTTTGTAcagcttatttttaatttttttccgcggttttaaagaaaactgagCCAGCAATGCCAAAGTATTTGACCTTCTCAAACAAATCCTtctatgtttttgttaatatgtatttgttaattgtttaatatttagtacagcatttttaagtaaattcaCTAATTTGTAATTGATATCAATCATCCACTCGTTCtcagttttaataaaagttttgttcatGTCA
>XM_043260615.1
TGTACTTTAACTGTCAGCTTCGATGACACCCGGCCTGCAAAATCAGCCTGCAAGGAAAAAGGCATAAGTAAAAGATGATTAAcagggagaaaaagaaagattaaataaattcagaaagCCACTGGAGAGAAGCAGCAGTAAGAGAGGAGGAACATTTGAAAAAGGAAGATGGTCCGGTGGTTCCACAGAGATCTGTCTGGATTAGATGCAGAGTCCGTTTTGAAGAGCCGAGGTGTCCATGGCAGCTTCCTGGCCCGACCGAGCAAGAAGAATGTGGGCGATTTCTCCTTGTCTGTTAGaGTGGGAGACATAATCACACACATTAGGATTCAGAACACGGGTGATTATTATGACCTGTATGGAGGGGAAAAGTTTGCGACGTTGGCCGAGTTGGTGGAATACTACACTGGAGATCATGGAACTCTACAAGATAAAGATGGAACCATTATTGAGCTCAAATACCCTTTAAACTGTTCTGATCCCACCACTGAGAGATGGTACCATGGCCACTTGTCAGGTCCAAATGCTGAAAAGCTGCTCCGAGAGCGTGATGAGCCCGGGACGTTCCTGGTGAGGGAGTCGCTCTCCAAACCGGGAGACTTTGTTCTGTCTGTGCTGACCGATGATTTGACCAGTTCTGGTAGGAGGGTCTCCCATATCAAGGTCATGTGCAACaatgaCCAGTACACAGTTGGCGGTAAAGAGATTTTTGACACTTTGACAGACCTTGTGGAGCATTTCAAGCGCACTGGTATTGAAGAGTTGTCTGGGACGATGGTTTACCTCAAACAGCCTTATTACTCCACAAGGTTGAACGCAGCTGATATTGAGAGCAGAGTAAAGCAGCTCGACCAGACTGCAGATAACATGGACGGGGccgataaaaaaataaaagctgggTTCTGGGAAGAGTTTGATGCGCTGCAGAAGATGGAAACTAAGGTAACGAAGAGCAGAGACGAAGGAATGAGACcggaaaacaaaagcaaaaacagatatAAGAACATCCTTCCCTtTGATGACACTAGGGTTACCCTGCAAAACGCAGATCCCAATGTTGTTGGCTCGGATTACATCAATGCCAACTACGTTATAAACAAATTAATGGATATTAGGTACCAGAAAGTTTACATTGCTTGTCAAGGCTGCCTCGCAACAACTGTAAATGATTTCTGGCAAATGGTATGGCAAGAAGAGACACGAGTAATCGTCATGACAACGAGGGAGGTTGAGAAAGGACGGAATAAGTGCGTGCCATACTGGCCTACTACTGAAGGAGAGTCAAAGGAAGTAGGCAGATACGTGGTGACGTTACACACTGAGAAGGATGCCACTGATTACAAGGTCAGAGTGATGGAGCTCAAAGCAACACACCGGAAAGAGCCACCTCGCACCATTTGGCACTACCAGTATTTGAGCTGGCCGGATCACGGCGTGCCACAAGAGCCCGGTGGAGTGCTTAGCTTTCTGGAGCAGGTCAATATTAAACAGCATGAACTGTCTTCGACTGGACCCATGATCATCCACTGCAGTGCTGGTATTGGGCGAACAGGAACCATTGTGGTAATCGACATGCTTATAGATAACATTGACGCTAAAGGTCTGGACTGTGACATCGACATCCAGAAATGTATTCAGATGGTTAGAGATCAGCGGTCTGGCATGGTGCAAACTGAAGCCCAGTACAAGTTCATCTACTTGGCTGTGCTGCAGTATATAGACTCAAGGACGGTCACACAAAGGGCTGTCATGGAAACAGAAACCGAATACGGAAACCTCTCAATTCAGCCTAAACACCAGAAGGCCAGCCGCAAAGCTTCAGCAAAaaaaaatgaAGACGTTTATGAGAATCTGGGAGCAAAGGGAAAGAAAGATGTCAAAAAGCAGAAATCGGAGGATAAGAAGGGTGGATCTGTCAGGAAACGATAAAcgtagataaaaagaaagatgaaatttaattttgctTCATGTTTGTAcagcttatttttaatttttttccgcggttttaaagaaaactgagCCAGCAATGCCAAAGTATTTGACCTTCTCAAACAAATCCTtctatgtttttgttaatatgtatttgttaattgtttaatatttagtacagcatttttaagtaaattcaCTAATTTGTAATTGATATCAATCATCCACTCGTTCtcagttttaataaaagttttgttcatGTCA

Function

symbol description
ptpn6 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within innate immune response. Predicted to be located in cytoplasm. Is expressed in blood island; gill; immune system; and liver. Orthologous to human PTPN6 (protein tyrosine phosphatase non-receptor type 6).

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 6

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05697 PTPN6, SHP-1; tyrosine-protein phosphatase non-receptor type 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260611.1 False 2028 mRNA 0.44 14 23122351 23137555
XM_043260612.1 True 2366 mRNA 0.44 17 23122351 23139126
XM_043260613.1 False 2295 mRNA 0.44 16 23122351 23138865
XM_043260615.1 False 2193 mRNA 0.44 16 23122351 23139120

Neighbor

gene id symbol gene type direction distance location
rbp5 rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655 coding downstream 1142 23117498 ~ 23121209 (-)
LOC122360201 LOC107724792,LOC107552857 coding downstream 12468 23103170 ~ 23109883 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding downstream 19649 23097267 ~ 23102702 (-)
LOC122360196 NA coding downstream 25700 23089957 ~ 23096651 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding downstream 32757 23081229 ~ 23089594 (-)
chd4b chd4,LOC107714608,LOC107724784,LOC107671917,LOC107704911 coding upstream 1941 23141067 ~ 23158902 (-)
cdc42l cdc42l,LOC107552852,LOC108433756,LOC108272678,LOC105029961,LOC108443667 coding upstream 30392 23169518 ~ 23175441 (-)
rbfox1l rbfox1l,LOC107704918,LOC107587790,LOC107714602,LOC107724799,LOC107552848,LOC107672019,LOC103045177,LOC108443663 coding upstream 70433 23209559 ~ 23221351 (-)
rap1gapl si:ch1073-90m23.1,LOC107724779,LOC107587789,LOC107672182,LOC107704921,LOC107714601 coding upstream 84944 23224070 ~ 23233788 (-)
styk1b LOC107587900,LOC107714598,LOC107724775,LOC107704922,LOC107672192,LOC107552846 coding upstream 105130 23244256 ~ 23249797 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 44481 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 48901 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 65821 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 70076 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 72508 23049549 ~ 23049843 (-)
G115621 NA non-coding upstream 26067 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 45924 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 187082 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 676771 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 677774 23816900 ~ 23817100 (-)
G115554 NA other downstream 188384 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 221164 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1033259 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1153816 21964855 ~ 21968535 (-)
G115149 NA other downstream 1318547 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 380682 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 443867 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 528939 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1178356 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1225514 24364640 ~ 24369566 (-)

Expression


Co-expression Network