rbp5 (rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655)


Basic Information

Item Value
gene id rbp5
gene name rbp5,LOC107714611,LOC107704908,LOC107724800,LOC107671900,LOC108263531,LOC108443655
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23117498 ~ 23121209 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260617.1
CTTTGCTCTGCTCGGAGTTGAGCTGGTTTGGGAGGAGTCAGAGACGCTTTTGGGGCTACTTTACAGAGGACGAACCGGAGCTAGGTCTTGGAGAGCTGTGTAACCCAACATCACGGAATAAAATCCCGGAAACACTGACCACGGATACCGCTCGGTGTCTTCACTTCGCGTGCTGTTGGAAGGAAACGGCGTCGATCGTTACAATTTAACCAAATTACCTAGCGTACAATGCGATAGTGCTGCCCAGAGACACGGATAGAGATCCAGACAGATAATAACCAGAGGAAAAAAGCAAGCCCAGGGTGTCACAGGTCACAGAACATTTAGTTGGATTCGTGTCAAACAAAAAGCAAAGTGAGAAAATGTCCAAACCTAATTATACCGGCATTTACAACATGGTCTCCCAGGAACGTTTTGAAGACTATCTCGCGGCTTTGGATGTTAATTATGCATTAAGGAAAGTGGTCTGCATTCTGAAACCCAGCAAACATATTGAACACGATGTGAACTCTGGCAAAATGAAGATTAAGACGGTCACTACCTTTAAAAACTTCGACATGGACTTTACTTTGGGACAGGAGTTCACTGAGGACCTGGGGCCAGTCGATGGGCGAAAgtgccagACCACGGTGAACTGGGATGGTGATAAATTGGTCTGCGTGCAGCGAGGAGAGAAAGAGGGCAGAGGCTGGACACACTGGCTAGAAGGAAACCTCCTCCATTTGgAGATGAGGGTTCAGGGTGTCACTGCCAAGCAAGTCTTTAAGAAGGCTGAATAAAGAtggaaggaagagagagagagagaaagaaatagaggGGCCATTTGCTGGGGGTTTGAGCTCAGATTATTCTAAGAGCTAAGGGTTCAGAAAAAGGCCATATCACAACAGTCCCTGAGGCACAATAAATAGTGTTTAAAAGGAGGCTGTGAATGAAGAATTCGGTACACTCTCTATAAAAATGTGTCTGCTTTTACAGCCCCGGTTTCCCTTCACAGCTTTAATCAAAGTTGAAATGAGATCATGACAGTAGAGCCCTGTTACCATCTGTGAACATTCAGGACTGGTACTGTAATCTATGGATTTATGGCACCCTGATATTGTATTGTGCAGATATGTTTACAGTAAGCGAAAGTAATGATTAAATGAGCCAGTAGTTTAGCTGGTCGAATACAACTTGGAATTCTTCTTTaccaaattacatttaatgtccAGTTACCTGCTATTGAAATGGCTAATATTAGAAATAATGGATTTGATAAATCTGTGTGAAAGGATTTTGATTAACTGCATAGACaaactaaaaatgtcaaaaaatgctctgaaatgttttatgtgtcCAGTCTAGAATATAACCGTTTATATAACCATAAAA

Function

symbol description
rbp5 Predicted to enable retinal binding activity. Is expressed in several structures, including axis; digestive system; gonad; immature eye; and nervous system. Orthologous to human RBP5 (retinol binding protein 5).

NR:

description
PREDICTED: retinol-binding protein 5

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260617.1 True 1374 mRNA 0.43 4 23117498 23121209

Neighbor

gene id symbol gene type direction distance location
LOC122360201 LOC107724792,LOC107552857 coding downstream 7615 23103170 ~ 23109883 (-)
LOC122360198 LOC107671893,LOC107724791,LOC107552796 coding downstream 14796 23097267 ~ 23102702 (-)
LOC122360196 NA coding downstream 20847 23089957 ~ 23096651 (-)
LOC122360042 LOC107587797,LOC107714594,LOC107704906 coding downstream 27904 23081229 ~ 23089594 (-)
LOC122360867 phf20l1,LOC107587800,LOC107704904 coding downstream 45309 23064745 ~ 23072189 (-)
ptpn6 ptpn6,LOC107714609,LOC107704909,LOC107671911,LOC107724803 coding upstream 1142 23122351 ~ 23139126 (-)
chd4b chd4,LOC107714608,LOC107724784,LOC107671917,LOC107704911 coding upstream 19858 23141067 ~ 23158902 (-)
cdc42l cdc42l,LOC107552852,LOC108433756,LOC108272678,LOC105029961,LOC108443667 coding upstream 48309 23169518 ~ 23175441 (-)
rbfox1l rbfox1l,LOC107704918,LOC107587790,LOC107714602,LOC107724799,LOC107552848,LOC107672019,LOC103045177,LOC108443663 coding upstream 88350 23209559 ~ 23221351 (-)
rap1gapl si:ch1073-90m23.1,LOC107724779,LOC107587789,LOC107672182,LOC107704921,LOC107714601 coding upstream 102861 23224070 ~ 23233788 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 39628 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 44048 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 60968 23056095 ~ 23056530 (-)
G115599 NA non-coding downstream 65223 23050307 ~ 23052275 (-)
G115598 NA non-coding downstream 67655 23049549 ~ 23049843 (-)
G115621 NA non-coding upstream 43984 23165193 ~ 23167940 (-)
G115631 NA non-coding upstream 63841 23185050 ~ 23189650 (-)
G115669 NA non-coding upstream 204999 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 694688 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 695691 23816900 ~ 23817100 (-)
G115554 NA other downstream 183531 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 216311 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1028406 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1148963 21964855 ~ 21968535 (-)
G115149 NA other downstream 1313694 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 398599 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 461784 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 546856 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1196273 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1243431 24364640 ~ 24369566 (-)

Expression


Co-expression Network