nagpa (nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811)


Basic Information

Item Value
gene id nagpa
gene name nagpa,LOC107591935,LOC107668288,LOC107666791,LOC107717356,LOC107600512,LOC107713811
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 21333650 ~ 21346600 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260618.1
TTTCCAAGTGAACCgtattgcaaattaaatatatgtatatatatttgtttgtttgaatgcaGTTTACGTACATcgaatgtttttttgcacagtttACAGCGAGCGAGGAAATAAATGTCAGATAAGATCAGTTGAGCACGTgaatcgcatcatatgaccaGCACATGTGAAAGTCCTTTCATCGAAGAAGACGGATGTAAACGGGACagttacttgttttattttatcgtACCATACGTATGTCTTATGGCAACATCGTCCGTGAATTTCGATCagatttctttgtttcttaTATACCTAGGAGTATGTTTGTCCCAATGCAAAGACATCCGACATTCTTTGGATGATGATCTCTTGTTACCCTACTCCGAATCCCACGGGCCGTCTCATTCCCACCGCTATGTGAGGGACTGCCAGCCCGTCGCTCATGGCAATGTAACCCACGAAACCTGGGCAGCAAGCAGGCACGCTAACTCCCCCGTGTTTCAGTCAAATATATTCATCTCCGACATCACCGATGACTCTGGCGTCCACAGATGGGCGAGCGGCCACGTCACCGAGGTTCACGACCCGTTGAGGTCCGTGTCCGTTCTGGAGCCAGGAGGCCCTGGAGGGTGCGGGTGGAGTCACAGAGAACTCGTGGAGCGCACTGCCAAAACCAAAAAGTGCCTCCTCGCCCAGAATGGGGGCTTCTTCGACACTGACGACGGGCAGTGTTTGGGGAACGTCATAAGCGACGGGAAACTGGTGAGGAACAGCAAAGGAGTTCAAAATGCTCAGTTTGGCATCCGAAAGGACGGGACGCTGGTGTTCGGCTACTTGTCTGAGGATGACGTCCTGGATCAGGTAAACCCCTTCGTGCAGTTGATAAGTGGGGTGGTGTGGCTGCTGAGAAAGGGTGAGATCTACATCAACGAGAGCATCCAGGCAGAATGTGATAAATCACAGAAGACCGGGAAATTCCAGTACTTTGTGGATGTGATATCTGCCCGTACAGCGGTGGGTCACGATGCAGAGGGCAAACTCATCCTCTTCCACGTCGATGGTCAGACGGGTTTAAGAGGAATGAACCTCTGGCAAGTGGCAAAGTTTTTGAAGGAACAGAATGTCATTAACGCCATCAATCTGGACGGAGGCGGCTCGGCCACTTATATCCTCAACGGATCCCTGGCCAACTACCCTTCGGACCACTGCAAAACTCGGATGTGGCGCTGTCCACGGGTGGTTTCCACCGTGCTGTGTGTTCACGAGAGGCTGTGCCAGCCGGAGGACTGCAGCGGACATGGGCGTTGTGTGGAGGGCCGGTGTGTGTGCCAGCAGGGCTGGAGCGGCCCCGGATGTGCCAATCACACATGCCAGAATGAATGCGGAGAACGTGGAATCTGCACAGAGAatggatgtgtgtgtgatgctggaTGGATGGGTTTAAACTGTAGCCAAGTATGTGCAGAAGGTTTTTATGGTGATGAGTGCAATCAAACATGCGCATGCGCAAACGGAGGCCTGTGCGATCCCGTTCATGGACGATGCACCTGTCTTGCTGGTTTCCATGGAGATTCCTGCGAGCGAGAATGCCCTCTTGGATTCTACGGGCTGAACTGCGAGCAGCCCTGCCAATGCCACGACATGTGCCCATGTGATGCTGCCACAGGAAGCTGCAACACCACATACCAAGGAGAGAGAAACATCAGCCTGCACAGAGCTGGTCACTGCCTGGCTACCAAGATGTGGAGGGAATGGAGACAAGAGGAGGAAGGTCATGCTTCAAAACCCTATTTGTCTGAACAAAGCTGGCTGGTTGTCTGCTCTATCCTGGCAACGTCGCTGCTGGCCAGCCTCACTGGTAACCTTATCCAGACGTGCAGAAAATGCAAAGCGCGCGGGCAGAGGGCGGACTACTCCTACTTGCCGCTGGGAGAGATCAACGGGTCCGTGGAGCCGAGCAGAGGACAGGGGACGAAGTCTGGGAAAGTTCTTTTTCAGCAAGAAGACTCTGATTCGCAAGACTCCTCATAACTACTTTTGTGCGGATTCACTCAAATGTGCCATTCAGAACAGGATAAGCTAGCTAGCTAGCCAGAACAAGCCCTTATTAGTGTGAGGACGAGGCAAGggtttgtttgttcatgctGTGAATGGACGAGTCTTTGGATTGGGGCTCCCAAACTGCCGATGATGGACAATGAGGTGGGCGTTTGCACCCCAACAGCTGTCTGCGCGGCTCAGTGCGTTCACGTTCGCCCCCGCCGAGTCCGTAGACGCCAGTTCAACACATGCCAAGTGCCCTGGTTGTGCAGTTTGACtgcattttgcacattttcttttttgtttgggTTTTCGGTAACCTTTCATTATAGCTGCTAGCAAAGCAAGAACCAGTTTCTCAAGTGACGACGTTCATAgtttaaaatactgtttcaatgaagacttttattttggtcttCAGATGAGAGGAGAAGCAATATCACCACAAAGCCTTTTTATTGACAGAATGGCCCAGTTGTTCCACCTGTTACCATAGGAACAGACGAGTTTTGAACTATGAACTCTTTTCCTGCAGGAACTTGCCAAACTGCTATTTTGAAACTGTTTtactgaatgattttttttttttcctcctgcggATCTAGAAGGTCGTTCAGTTTATTTCGATTCCAGCCCTCTGCTCTTTTGTTTCTGTTAACGCCTTGCCAACTCCTGCCAGCCTTATCATAGTGCTGTTTTGTGTGTTGTCTTAGACACTTAGATCCAGCCATAGAAACacgatatgaaaaaaaaaaataaatcaaggcCTGGATTGTTTTCACACTCTCTAGGAAAGCAAGAGAAGGACATTTCCTTTGTGCTTAGCTCAaagttgctctttttttctctgttctgaAGCAGTGAATCTGGGCTTTGGATAGAGATTTGAAAGTGTTTCGTCAGGTTCTGTTTTAGCTCTGAACCATGACGCAAATATTATGGAAGAGGAACATTTACTTGAGTCTGTAGTTCCTGTGTTGTTTCCTGTCTAGCATTCAAATAGATTTAAGCTTGTCttgttttaacagtttaaatgtTTCACAGGTACGCGTACAGAGATATGTGGAAGGATGGATTTCATTAAACCCGTCAAAACATTCCAGAATATATAAACCCCCAAAAcaacttaataaataatcacatttcatattgtactttttgcattttgtgttaGTATTTAAATGATGGTGCATTTTCTCTGACagctatatataataatctctcataactgtaataataacaaaaatatttgttacatttttaattatttgctaaTCTTGGTAGTgcttgtattttaatatatgctaatttaaatcaaataaagtgAAAGCAAAACCTAGATACATTACAATAATGAAAATTTGGGGGTTAAGCTTGcttgtcattaaaaataatgttattgcaaaagataattaatgttttgttgttgctgttataTTGAGGTGAAATTTAGCTGGTACATCTTTTTGCCCCATAAAGTGATGTATttagttacaaagttacataAACATCATGCCATAAACAATAGTGAAAGGTGTCAGCGGTGTGAAACATTTGACTGTTTATTAATTTCCTCACTGCCTGCTTTGCATAAGTTCTTCACTGCAGGTGACCTCTATGCTGATCGCCTCTTGTAAGTGTAAAGCAGACAGGGACAAAGACTTCAATCCAGGTTTTTGATgtagttttttatttcattttaatcgaGCAGGAAGATGCCACACGCGTTAGAGAGGGTACTTGTTCGTCCACGATACGGTCATGATGCTAATCAGAGCGTCTGAGGCTGCTGTcgcacattttgtgtgtgtgtgtgtgtgtgtgtgtttttttttttattatgctgcaTGGCCTTTGGTTAAACAATAGAAATTGCTATCAAAAGaacatgcataattaataattgtattaataatttagtttctttgcacaattttgtttgtttgcaaaaaatgcacaattttgtTTGTTAGCACAGATATTTCCAATTCAGATCGGTTGATTGCTCTCACCCCTGCTTATGTTCTTGGGTTTGTGCAGGATCACTGGTGGATAGTCTTTTGAATTTCAGTGAATGTATGAAacaaaatgattacaaaataatatgaaCTTTGGGatttttctatattattttttatattccacATATGTTTGTGCCCAAAATGGCTGGTTTTCCACTGAGCaccctctaaaaaaaaaaacacttattccAGGTCAAATTTCTATTTTCCACactctaaaaaataaatccaaaaaataacagaaaaggtACAGGCGGCTCATTAAACACGACCCGATCCATTAATTTTATGGGCATTTCTGTTAACACAATGCaatgaaatgtgaaattcaACGCATTGGTGAAAGGCcagtaaaaaacacaaacaaacttctaattatgtattatttcataCACCGGAGGAGTTAATACAATTTGGTCCTAATGAACTTCTTAGATTATATATAGATTGTTAATGTATTGCTTTATACTTGTCAGGCCGCTAATCAAATACACTGCGGTTTGATCtgttttgaaattaatttatgaattttcaTATCATTTAAAGGATACAATTTACTGTCACAGACcacaaataaaaagtgtgttctTTCAGAGAAAAGTTAAAAGGTTGTTAAAAGCTTGTGTGTGTTCAATAGAAAATTGTGTTCAGGAGCAAAATTGTTTCACAGAACATGAAGATGTGGATTTTATAGTGCTGAAAAATTTCTGTTGAAAAGTTAtgataattttaacaaaaaaaaactaatattgaaATGCCATGTCAGTACCATTGTTTGTCACTTGCTTGCCatgtttgaaacatttttcttaacatAATGCAGATTAATGACTCTCTGTTCTTTCAAAAGTTGTTAAATACCATTTTTACCaaccaacaaaacaacaaataaagtgATTTGTGTAATATGGTGCACTTTGAGGCA

Function

symbol description
nagpa Predicted to be involved in secretion of lysosomal enzymes. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NAGPA (N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase).

NR:

description
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like isoform X2

GO: NA

KEGG:

id description
K01125 NAGPA; N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260618.1 True 4971 mRNA 0.42 11 21333650 21346600

Neighbor

gene id symbol gene type direction distance location
tp53inp1 tp53inp1,LOC107666795,LOC107717380,LOC107600511,LOC107591975,LOC107668322 coding downstream 3659 21322911 ~ 21329991 (-)
ccne2 ccne2,LOC107717358,LOC107666792,LOC107600548 coding downstream 12563 21315779 ~ 21321087 (-)
LOC122361118 gbp,LOC107666878,LOC107717378,LOC107600509,LOC107668283,LOC107713814 coding downstream 164246 21167981 ~ 21169404 (-)
dek dek,LOC107600508,LOC107717375,LOC107592846,LOC107666821 coding downstream 187573 21139170 ~ 21146077 (-)
LOC122360614 scap,LOC107600505,LOC107717374,LOC107591983,LOC107668298,LOC107713836,LOC107666822 coding downstream 195169 21120769 ~ 21138481 (-)
LOC122360424 LOC107666780,LOC107717381,LOC107600549,LOC107713810,LOC107591947,LOC107668291,LOC101885642 coding upstream 14193 21360793 ~ 21365201 (-)
cfap418 LOC107666820,LOC107668311,LOC107592823,LOC107600550,LOC107591919 coding upstream 58663 21405263 ~ 21408968 (-)
trnas-aga_117 NA coding upstream 62344 21408944 ~ 21409025 (-)
rspo3 rspo3,LOC107666888,LOC107713808,LOC107600514,LOC107591889 coding upstream 66268 21412868 ~ 21431807 (-)
trmt11 trmt11,LOC107668323,LOC107713829,LOC107567767,LOC107730191,LOC107666854,LOC107600515 coding upstream 293497 21640097 ~ 21651111 (-)
G115051 NA non-coding downstream 2292 21331012 ~ 21331358 (-)
G115042 si:dkey-22o22.2,LOC107668308,LOC107713796,LOC107592533,LOC107666790,LOC107717379,LOC107600533 non-coding downstream 18904 21283464 ~ 21314746 (-)
G114997 NA non-coding downstream 213066 21118149 ~ 21120584 (-)
G114947 NA non-coding downstream 498415 20781803 ~ 20835235 (-)
G114943 NA non-coding downstream 564563 20768744 ~ 20769087 (-)
G115098 NA non-coding upstream 42215 21388815 ~ 21389147 (-)
G115155 NA non-coding upstream 478598 21825198 ~ 21825437 (-)
G115170 NA non-coding upstream 527226 21873826 ~ 21874051 (-)
G115262 NA non-coding upstream 883640 22230240 ~ 22237066 (-)
G115335 NA non-coding upstream 1336827 22683427 ~ 22683638 (-)
G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 other downstream 316545 21012607 ~ 21017105 (-)
G114901 NA other downstream 680076 20651977 ~ 20653574 (-)
scn1ba scn1b,scn1ba,LOC107666845,LOC107737825,LOC107719111,LOC107686587 other downstream 682713 20636125 ~ 20650937 (-)
G114793 NA other downstream 881200 20441965 ~ 20452450 (-)
G114715 NA other downstream 1155892 20166795 ~ 20177758 (-)
G115093 plekhf2,LOC107666819,LOC107600513,LOC107668314,LOC107591926 other upstream 29290 21375890 ~ 21378836 (-)
mettl6 mettl6,LOC107600537 other upstream 63359 21409959 ~ 21411772 (-)
trnae-cuc_38 NA other upstream 63360 21409960 ~ 21410031 (-)
G115116 NA other upstream 213621 21560221 ~ 21561216 (-)
cenpw cenpw,LOC107600551,LOC107668290,LOC107666774,LOC107567752 other upstream 259358 21605958 ~ 21614203 (-)

Expression


Co-expression Network