sox4b (sox4,LOC107732138,LOC107722246)


Basic Information

Item Value
gene id sox4b
gene name sox4,LOC107732138,LOC107722246
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 7388716 ~ 7392318 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260642.1
GGCTATCAATTATTCACGGACAGGGCTTTTAATCTCCACAGACGTGCTGGCTGTTTAATATCCCGTGTTTCTTTATATGTGAGCGCGGACGCGCTGCGAGGCGACTCTTTTCTCACTGTACGCAGGATGTTTCTATTTCTAAGGTTTAAAAGATCACGCCTCCCTCGTCGAcacgcaaaaatgaaaaacacacatcGGCTTGTACCTTTAAAAACTAAGTTTGTCTTGTATACTGGAATGAGGTCAGACCCAAAGCTCCTCATTGCACGCGCTGATTATTATTAGATTCCTTTTTGCTCCAATGAAAAGAGAGTGGGCGTGTTCTTGGCTCGGAGAAGGGTAGAGACAGCCGCCGATTGGCCGGCCGCCGTCGCTATTATACCATTGGAAACGGATAAAGCCGCATGAGGCAGAGAATAGAAGTGTGTTGAAACTTACAGCCCGCTTTTAAAAGACGGACACTCGTGCTAGCATTGCGTCCCGGTTTTCCCGCACGGTTTGAAGGGGGAAGGATATGCAGAAGGAGTCAGATATCTTTCGAAACTCGAACAGAGCTTTGCTGCGTCGCAGCGCACACACTAACCCCGAGCCCGGCTGCGCGCGTGCACAAACTTTCCGCGGCTCGCCGACTGTTACAGCATTAATACTGGATGCACGGGCACGGTTTCAGCTCCGTGAACCGTATGATAAAGCCCCGAAACAGAACTTTAGACACACGCCAAGCCACCGCACTGAGCACGACTGAAAGCGCGCGTGCGGTGCACCAGCTCTCCTCAGGACTATTATCAGACTGAGTTTTCTTTGGCGACGCGTCGGACTCGAGAGAGCACGCTCGCTGTAGCGATGGTCCAGAAAAGCAGCAGCACGGAAAACCCCGACGCGCTGTTCGCCGGGGACTCGTCCGATTCCGGCGCGCTGGATCTGGACGCGGCTTCCTCGCCGACCCCCGGCTCCACGGAGCCCGGCGCGGACAAGCTCGACCCCGGCTGGTGCAAAACCCCCAGCGGCCACATCAAGAGACCGATGAACGCGTTCATGGTGTGGTCGCAAATCGAGAGGCGCAAGATCATGGAGCAGTCGCCGGATATGCACAACGCGGAGATCTCCAAGAGACTCGGCAAGCGCTGGAAGCTCCTCAAAGACAGCGACAAGATCCCCTTCATCCGAGAGGCGGAGCGGCTGCGGCTCAAGCACATGGCAGACTACCCCGACTACAAGTACCGGCCGAGAAAGAAGGTGAAGTCGAGCGGCTCCAAGCCGAGCGAGAAGGGAGAGAAGATCAGCGGGAGCAGCGGCTCCAAACCGGCGAAGAAGAGCGGCGGCTCCAGATCCGCAGGCAAGCCGCACAAGATAGTCCTGTCCGGCGCCAAGAGCGCGTTCCCCGCGGACCACCACTCTCTCTACAAGTCCAAGTCCGCGCCGGCTTCCAAGCAGATCCCTGACAAGAAGGCCAAGCGGGTGTACGTCTTCGGAGGCGGCAGCGGCGTAAGCGCGTCCTCGGCAGCCGTGCCCGGGAGCCCGACGCTGAGCAGCTCCGCCGAGTCCAGCGACCCGCTGAGTCTGTACGAGGACGGCGCGAGCAGCGGCAAAGAGGGCGCCGACTCCCCCAGCGGCGCGTCCCCGGACCGCCACCGATACACCGGCATGCGCGCGTCTTCGCCCGCTCCGTCCGCGTcgcactcctcctcctcctcttcgtcGCAGTTCTCGTCTTCCTCCGACGAGGAGCTCGACGACGACGCGCTGGACGTCAACCCGAGCCCGGGCTTTGACAGCATGTCCCTGGGAAGCATCGGCTCGTCGGTGCTGGACAGAGACTTCGACATGCACTTCGAGTCCGGCGCTTCTCACTTCGAGTTCCCCGACTACTGCACTCCGGAGGTGAGCGAGATGATTTCTGGGGACTGGCTGGAGTCCACCATTTCCAACTTGGTGTTCACGGCTCACGTGCTGAACTAGAGGAGGAACGCCGGACACAGGGGATAGCAGACAAGTGcgtttgtttgtaaaataagCCTCCGCGTAAAGGCTCCGGAAGCCGCGGCGCTTTGGCGAGACGCGGGCGGGACGGAAAAGCGAAGCCGCGCGTCAGACGCTTTGTCGCGGCAGGGCCGGAGTCCTTTCCCCGCGCTCGGAGCGAGAGGAAGAACTTCACCGGGAGTGCTTGAGAAAACGCGTTCGCAACTGGAAAACTGTGATTGATTTGCACGTACACGAGGGCGTCCGTTTTAATCGTTTTTACTTCAAAAGAGACCTTTATGAACTTGAACCTTTCGCCTCGTGGACTCGAGGCTCTGCTTTCGGCGCGGAGGATTTCTGGACGAAAGGCGAGCCGAtttttacataaagaaaaaggagaaaaaaaagaccgCATGTTATCTGTCCTCTCTTGTAAGATTTCTGTAAGACTGTGCTTAGGATCAGTTAATGGATAGATGGCGCTATGTTTGATTTCCTCCtcgcaggaaaaaaaaaatcaccagcTGTTTTCATTCTTAACTTCAGGATTCAAACATAAACTCAAACCTGTGCTGAACTTTATATACTTCTCTCTCTACGATTCAGGACCAAAACGTTTAAGTTTCCGAAGCTGTTTCTTTTCTGTCTTCTTCAGATGACATTTTTTACGGATGTATTTCTATTCTGACCAAACAGCTCTTCTTGGTTCTCTGTTCtcatctgtctgtccgtctccTTCTCCGAAGAAGGGCTAGCATTtgaaccttttgttttttttatatttaaatgtagacTTTTGACACTTAAAGAGAGGAAACGTTTGATTATTTTCTCAgtgtatttttgtacaaatatatataaagagggGGGTGTTTGGGTCTGAAGAGTCGGGTGAGTCGTGTCTGAATCGACCTCCTGTTTCATGTTTACAGTCTCGATCTGCAGGCGtcttaaagacacacacacacacacacacacacacacacacacacacaccaaaaccCAGTCAAGCCAACATGTGCttcgtttttacatttttctctgaGCGTGCCGAATTAAACCGATTGTAGCTTTAAAACGAGCGACTTTTCTTGGCGTTTTATATCTCGAGAAGCCACTGGATGGAAATCTTCAGACGTATTCAAAGGATCCACTTGAGCTTCGCGACGATTATGTGCTGCGTTCCTCATtgtgtttgaatatttaatcttttctaCTTGTCGGATAAGTATAGCTGATTGTTTTAGTCTCTTAAGGCATGGTGAATAGATTTGTATTTCCGATTCAGGTTTATAGCTGttgtgttaaaaaagaaaaaaaaaagcatctttgtACAGCTGTATCATAGGCAGAAAAGTGTGTGTTATTGTATGTTGTTGCGCTTTATCTCGACAGGCACTATCTTTATACATCCCTGCTTAGCCTTTTCTTCATTTCAAGATGCTTGTTaaggatttttatatatacggTTGAAATATATGAACTTTATTTTCATCCATTCTGTGCAATATGCTGTGTAGAAATCTTGTTTTGTCGAATCATGCCAGCTTATCGTGTCAAGTCACTGCCTGTCAGATTGTTCATATACTCCTGTACAGAACTTTTTCATAAAGGAAATAAACTCAGCTGGAACTGAACCCTAAA

Function

symbol description
sox4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including DNA damage response, detection of DNA damage; DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest; and regulation of cellular protein metabolic process. Located in mitochondrion and nucleoplasm. Implicated in Coffin-Siris syndrome and urinary bladder cancer.

NR:

description
transcription factor SOX-4-like

GO:

id name namespace
GO:0031018 endocrine pancreas development biological_process

KEGG:

id description
K23581 SOX4; transcription factor SOX4 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260642.1 True 3603 mRNA 0.51 1 7388716 7392318

Neighbor

gene id symbol gene type direction distance location
LOC122360792 NA coding downstream 698490 6650949 ~ 6690226 (-)
irx1a irx1a,LOC107758835,LOC107558645,LOC107726233,LOC107554507 coding downstream 822527 6561850 ~ 6566189 (-)
rprd2b LOC107757337,LOC107558642,LOC107689000,LOC107689168,LOC107559016,LOC107726232 coding downstream 1109139 6263504 ~ 6279577 (-)
tars2 LOC107558643,LOC107689001,LOC107726246 coding downstream 1126719 6248919 ~ 6261997 (-)
celf3b LOC107559029,LOC107713913,LOC107689166 coding downstream 1488499 5877048 ~ 5900217 (-)
cables1 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 coding upstream 536211 7928529 ~ 7951085 (-)
gata6 gata6,LOC107681823,LOC107708510,LOC107747517,LOC107691181 coding upstream 585311 7977629 ~ 7984289 (-)
mib1 mib1,LOC107681781,LOC107708480,LOC107550435,LOC107747519 coding upstream 613400 8005718 ~ 8053185 (-)
LOC122360189 LOC107691296,LOC107550438,LOC107747520 coding upstream 675257 8067575 ~ 8074304 (-)
mpp7b LOC107681820 coding upstream 712908 8105226 ~ 8143954 (-)
LOC122360224 NA non-coding downstream 2366 7331148 ~ 7386350 (-)
LOC122360226 NA non-coding downstream 92478 7294182 ~ 7296238 (-)
G110315 NA non-coding downstream 193400 7194538 ~ 7195316 (-)
G110307 NA non-coding downstream 297653 7089726 ~ 7091063 (-)
LOC122360716 NA non-coding downstream 699813 6685500 ~ 6688903 (-)
G110405 NA non-coding upstream 748 7393066 ~ 7393325 (-)
G110399 NA non-coding upstream 5740 7398058 ~ 7405996 (-)
G110429 NA non-coding upstream 373569 7765887 ~ 7766257 (-)
G110437 NA non-coding upstream 400489 7792807 ~ 7793387 (-)
G110449 LOC107708546,LOC107681784,LOC107691124,LOC107566457 non-coding upstream 457361 7849679 ~ 7904593 (-)
LOC122360222 nrsn1,LOC107730905,LOC107758834,LOC107558647,LOC107663792 other downstream 187335 7195490 ~ 7201381 (-)
G110303 NA other downstream 305192 7081962 ~ 7083524 (-)
LOC122359836 adamts16,LOC107757336,LOC107726256,LOC107689003,LOC107657842 other downstream 1049220 6279709 ~ 6339496 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other downstream 1204583 5902577 ~ 6184133 (-)
G110215 NA other downstream 1288789 6096675 ~ 6099927 (-)
cdkal1 cdkal1,LOC107722243,LOC107732137,LOC107663002 other upstream 49580 7441898 ~ 7618596 (-)
LOC122360680 LOC107749122,LOC107702023,LOC107751904,LOC107564882,LOC107661990,LOC107570991 other upstream 435897 7828215 ~ 7830750 (-)
mkxb mkxb,LOC107681765,LOC107566716,LOC107691300,LOC107550429,LOC107747522,LOC107708850 other upstream 690582 8082900 ~ 8092455 (-)
G110544 NA other upstream 823711 8216029 ~ 8216595 (-)
G110554 cbx3,LOC107596654,LOC107743152,LOC107744695,LOC107550827 other upstream 906471 8298789 ~ 8302245 (-)

Expression


Co-expression Network