bckdhb (bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448)


Basic Information

Item Value
gene id bckdhb
gene name bckdhb,LOC107688983,LOC107689156,LOC107559046,LOC107569448
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 5508617 ~ 5559896 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260677.1
GACGTCAGAGCGCCGTTCCAGCTCGGGTTCCAGCGCAATGGCGGCGACGCGGCTCTTCTTGAGGACTTCGGTCGTCAGGTCTCCGTTAACCGGGTTAACCGGTGGCGTGCGCGGCAGTTTGGGGTTAACCCTGCTTAAACTGTCCCCTGACTGCACAGCCAAGCCGAAAGCACCGAGGAGACATGCAGCGCACTTCACCTATCACCCCGACCCCGTGCCTGCTCAGTACGGCCCCACACAGAAGATGAATTTGTTCCAGTCCGTGACCAGTGCCTTGGACAACACGCTGTCTAATGATCCCACCGCAGTGATCTTCGGCGAGGACGTGGCGTTCGGAGGGGTGTTCCGGTGCACCGTCGGCCTCCGAGACAAATACGGTAAGGACCGTGTATTTAACACCCCGCTGTGCGAGCAAGGCATTGTGGGTTTTGGGATCGGCGCAGCTGCTGCAGGAGCCACCGCTATTGCAGAGATTCAGTTCGCTGACTACATTTACCCGGCCTTCGATCAGATCGTAAACGAAGCGGCCAAGTACCGGTACCGCTCCGGGAACATGTACGACTGCGGGAAGCTGACCATCAGGTCTCCGTGGGGCTGCGTGGGTCACGGCTCGCTCTATCACTCCCAGAGTCCGGAGGCCTTCTTCGCACACTGTCCTGGAATTAAGATCGTGGTGCCGAGAGGTCCGGTCCAGGCCAAGGGTCTTCTTCTGTCCTGCATCGCTGATCAAAACCCCTGCATCTTTTTCGAGCCAAAAATCCTGTACAGAGCAGCAGTGGAGCAGGTGCCCACAGAGGCCTATCTGATCCCGCTCTCGCAGGCCGAGGTGCTGGAGGAGGGCAGTGATCTGACGCTGGTGGCCTGGGGAACGCAGGTGCATGTGTTGAGGGAAGTGGCTGCCATGGCACAGGAGAAGCTGGGCGTTTCCTGTGAGCTCATCGACCTGAGGACCATTTTGCCTTGGGACAGAGAGACGGTTTGCAAGTCGGTGGTGAAGACGGGCCGGCTGCTCATCAGTCACGAGGCTCCGGTCACCGGAGGATTCGCCGCTGAAATCAGCTCTACGGTTCAGGAGGAGTGTTTCCTCAACTTGGAGGCTCCCATCAGCAGGGTTTGTGGGTATGATACTCCCTTCCCTCACATCTTTGAGCCCTTCTACATCCCGGACAAGTGGAAGTGCTTCGAAGCAGTCAAGCGTATGATCAACTACTAAAGCAAagGCGACACAGATCGAGAACTCGTCCACCTCTACATCAGTGAACAAACCAGCCAATAACGCCAGCATCACTGCTAACTAGGTTTCTACCTGTAGATGGGACCATGTCACCAGACGGGAACGTTCTTGATCATGTGTCCAGAGGATGAACGTGGTTTCTGAACACTAACATGTGGACTTCACACGGCTGCTGTGCTCTTCCGTCTGGAtggtttttgttattaaacTTAACTGAGGCTGGATCTTGTGTGTCAATGTTTTATTGGTGAGTTGCTGAATGTATCTTTGGTTTAATTGAataaatctctttctctcttctgaa

Function

symbol description
bckdhb Predicted to enable catalytic activity. Predicted to be involved in branched-chain amino acid catabolic process and response to nutrient. Predicted to be part of mitochondrial alpha-ketoglutarate dehydrogenase complex. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human BCKDHB (branched chain keto acid dehydrogenase E1 subunit beta).

NR:

description
PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00167 BCKDHB, bkdA2; 2-oxoisovalerate dehydrogenase E1 component beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260677.1 True 1538 mRNA 0.55 11 5508617 5559896

Neighbor

gene id symbol gene type direction distance location
tpbgb LOC107688980,LOC107725281,LOC107713928,LOC107713927,LOC107689178,LOC107559023 coding downstream 87977 5418473 ~ 5420640 (-)
rpa2 rpa2,LOC107713930 coding downstream 128655 5367332 ~ 5379962 (-)
ppp1r8b ppp1r8b,ppp1r8,LOC107564517,LOC107689150,LOC107688979,LOC107713931 coding downstream 148199 5355987 ~ 5360418 (-)
LOC122361376 NA coding downstream 148938 5359510 ~ 5359679 (-)
rrp15 rrp15,LOC107598955,LOC107737032,LOC107703929,LOC107689025 coding downstream 331805 5173650 ~ 5176812 (-)
ttk ttk,LOC107713924,LOC107726228 coding upstream 585 5560481 ~ 5570782 (-)
dctn3 dctn3,LOC107713912,LOC107559051,LOC107689179,LOC107726235,LOC107689028,LOC107569444 coding upstream 11605 5571501 ~ 5573800 (-)
mrpl51 mrpl51,LOC107726236,LOC107713917,LOC107559052 coding upstream 261095 5820991 ~ 5822850 (-)
arnt arnt,LOC107688995,LOC107689175,LOC107559034 coding upstream 274261 5834157 ~ 5850214 (-)
cers2b cers2b,LOC107688996,LOC107726244,LOC107689165,LOC107558627 coding upstream 293580 5853476 ~ 5873058 (-)
G109944 NA non-coding downstream 71550 5435832 ~ 5437067 (-)
G109956 NA non-coding downstream 111100 5397297 ~ 5397517 (-)
G109953 NA non-coding downstream 112263 5396130 ~ 5396354 (-)
G109942 cyp4t8,LOC107559042,LOC107703932 non-coding downstream 161058 5346405 ~ 5347559 (-)
G109914 NA non-coding downstream 187321 5247238 ~ 5321296 (-)
LOC122360242 elovl4a,LOC107726252,LOC107689158,LOC107689169,LOC107713923,LOC107688984,LOC107559048 non-coding upstream 15744 5575640 ~ 5581732 (-)
G110090 NA non-coding upstream 214951 5774847 ~ 5777041 (-)
G110093 NA non-coding upstream 218858 5778754 ~ 5808349 (-)
G110100 LOC107713901,LOC107689161,LOC107559047,LOC107689017 non-coding upstream 250075 5809971 ~ 5813684 (-)
G110102 NA non-coding upstream 255664 5815560 ~ 5816873 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other downstream 263059 5232211 ~ 5245558 (-)
G109724 LOC107084717,LOC106511825 other downstream 1413113 4094757 ~ 4095504 (-)
G109600 NA other downstream 2378638 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 3544456 1741120 ~ 1964161 (-)
G109287 NA other downstream 4625865 882459 ~ 882752 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 222771 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 257144 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 342681 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 469312 6029208 ~ 6034777 (-)
G110215 NA other upstream 536779 6096675 ~ 6099927 (-)

Expression


Co-expression Network