zgc:110410 (zgc:110410,LOC107723576,LOC107657623,LOC107593651)


Basic Information

Item Value
gene id zgc:110410
gene name zgc:110410,LOC107723576,LOC107657623,LOC107593651
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16239954 ~ 16243472 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260723.1
aaaaaacaatcccaCAAGTGAACTTGGTTATTATTAATGTGTACTGATTTGATAAGCTATGCAAAGTCCTGTCCCTCTGGAGACAAACTCATCAAGAACAGACTTTGCCCTACGCAGCTCATAACAGGAAGCGGAGGGGTACCGGACTAAAAGGTTCGTTGAGAGATACAATATGAACAGAGAGCAGCCTCCCCCTCCGTATAACCCCTATTACCCTCCGCATTATCCTAATGCAACACAGGGTAACATTGGGCAGCCCACCGCTGGCATGATGCCCCCCGCTGGGCAGCCCACCGCTGGCATGATGCCCCCCGTTGTTGAACATGTCAATATGGGGATTCCGGACAGTGCTCCGCCAGAATACTCTCTGGGATTTGAAGATGAGAACTGCTTTTCAGATGCTACCATAAGAAGAGGTTTCATAAGAAAAGTGTATCTGACGCTTATGGTTCAACTTTTGATAACTGTTGGAATCATCTGTGCTTTTCTTTACTGGGAGACACTCAAGGACTGGGTGAGAGAAACATACTGGTTTACCTACACTATGATGTGCGCAACGTTTGTTCTAATCATTGTGCTCATCTGTTGTGGTAACATACGTCGCAAAGTTCCCTTAAACTTCATCTTCCTAGCGCTATTTACAATCACAGAAGGCTTTCTCCTCGGATCAGTGGTAGTGTACTATTCAGCAGATGCTGTGCTCTGGGCAGTGGGTGCAACTGCTCTGGTGTCTCTTGCAATGACTTTGTTTTCACTGCAGTCAAAATGGGACTTCACAGCTCTATCAGGGAGCATATGGGTATTATCCTGGActctgttttcatttgcattacTCTGTGCAATTCTGAGATCACAGTATTTGTACATCCTTTATGCTTCACTGGGAACTTTGGTCTTCTCTTTGTACTTGGTTATGGACACGCAGCTCATACTGGGTGGGAAGCACAAATACAGCATCAATCCAGAAGAGTACATCTTTGCTGCTCTGAACTTGTACCTTGATATTATCACAATTTTCTTATTATTGCTTCAACTAATTGGACTTTGTCGTTGATGTGGTTGACTGTTGGGGCTTTGAGACACATTTTTActccattttttaaacatagtttGAGCTTGTGTCTATAACATATTAGAGGTTGAATTGATTTTGGTTAATTGTAGATAAAACAGCTATTAGTAAAATAGCTAACGCACTGGAAACAAAATGGCGGTGAAataattttcactcagaaattgctattAATTTTTACAGATAATTACAGCATCACAAAATTGAATTCAATGCAGTGGTACATTAAGTAAAATTGCTATAGATATACAGGTAAGCGAATAAAGAACAATGTCATATATTGGATATGAATATGCAATAAACCAGGTTTTTGAGGAACATTTTTAccaccattatttaaaaaataactccatttttttctgtaagatGTTGTAATACATGTTCTCTGTCATGTCACtgtactttaatttaaatttaataaagtatCTACTGTCATCCA

Function

symbol description
zgc:110410 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb and intestine.

NR:

description
protein lifeguard 1-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260723.1 True 1511 mRNA 0.40 10 16239954 16243472

Neighbor

gene id symbol gene type direction distance location
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding downstream 29321 16197719 ~ 16210633 (-)
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding downstream 85566 16152504 ~ 16154388 (-)
LOC122361095 LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647 coding downstream 87875 16148963 ~ 16152079 (-)
LOC122360718 jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487 coding downstream 136299 16070539 ~ 16103655 (-)
rbfa LOC107699468,LOC107715083,LOC107596252 coding downstream 239306 15998312 ~ 16000648 (-)
derl1 derl1,LOC107593655,LOC107657695,LOC107714924,LOC107736822,LOC107699495,LOC107595682 coding upstream 13010 16256482 ~ 16264542 (-)
tomm40 LOC107723430,LOC107593658,LOC107657699,LOC107699493,LOC108438269,LOC107714943 coding upstream 23566 16267038 ~ 16272470 (-)
ddx61 ddx61,LOC107699492,LOC107714973,LOC107657698,LOC107593657,LOC107595651,LOC107723428,LOC108428944,LOC103044136 coding upstream 29808 16273280 ~ 16280228 (-)
bcl3 LOC107715119,LOC107596570,LOC107723427,LOC107593656 coding upstream 37415 16280887 ~ 16301782 (-)
irge4 LOC107657702,LOC107723472,LOC107593663 coding upstream 75687 16319159 ~ 16323788 (-)
G113281 NA non-coding downstream 43277 16120326 ~ 16196677 (-)
G113280 jarid2a,LOC107593646,LOC107657689,LOC107714830,LOC107699452,LOC107595576 non-coding downstream 44058 16194029 ~ 16195896 (-)
G113300 NA non-coding downstream 47265 16190862 ~ 16192689 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding downstream 172409 16066166 ~ 16067545 (-)
LOC122360541 NA non-coding downstream 253770 15984741 ~ 15986184 (-)
G113325 prss59.1,LOC107595716,LOC107739933,LOC107657703,LOC107735769,LOC107699485,LOC107593705,LOC101066992,LOC108431067,LOC102234122 non-coding upstream 108798 16352270 ~ 16357623 (-)
LOC122360769 NA non-coding upstream 244646 16488118 ~ 16494739 (-)
G113405 NA non-coding upstream 309136 16552608 ~ 16553858 (-)
G113433 NA non-coding upstream 345213 16588685 ~ 16589614 (-)
G113439 epb41l4b,LOC107706320,LOC107687806,LOC107596310 non-coding upstream 363242 16606714 ~ 16607680 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other downstream 448 16232972 ~ 16239506 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other downstream 11488 16218661 ~ 16228466 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other downstream 98719 16139319 ~ 16141235 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other downstream 226203 16012964 ~ 16013751 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other downstream 233483 16001313 ~ 16006471 (-)
esrp1 esrp1,LOC107687807,LOC107706288,LOC107593677,LOC107657715,LOC107723447,LOC107706528,LOC107595837,LOC107687825,LOC107657630,LOC107723411,LOC107593711 other upstream 342612 16586084 ~ 16682178 (-)
onecutl onecutl,LOC107741751,LOC107663311,LOC107689849,LOC107732477 other upstream 1568898 17812370 ~ 17830977 (-)
lmna lmna,LOC107704890,LOC107598000,LOC107671682,LOC107587813,LOC107741735,LOC107723101 other upstream 1951999 18195471 ~ 18239269 (-)
slc45a4b slc45a4,LOC107704898,LOC107587808,LOC107741725,LOC107671711,LOC107552861,LOC107723109 other upstream 2113945 18357417 ~ 18367273 (-)
mroh1 mroh1,LOC107741723,LOC107724794,LOC107671755,LOC107704831 other upstream 2249154 18492626 ~ 18520287 (-)

Expression


Co-expression Network