pnrc2 (pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761)


Basic Information

Item Value
gene id pnrc2
gene name pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23811951 ~ 23815789 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260779.1
AGACAAACTGGAGAAGGAGAATAATACCATTCCGCTGTAGACTCGGATTTGAACAAAGATTCGCATATCGGGAAATATTTTCTCCATAAACAGCTACAGCTGACATACTAGACCAAGGGAAGACGAAGGGCTTATTCCATCGAAGCCTAAGGAAGTCGATTCACGGCTTCTAGAGCACCGTGCGCCGAGGTGAATTCATGTTCAGCTCGGTTACACGACAAAACAACGCTCATTGGCACATGAAAACTTCAGATCTTGCTGGACATAGATGTGCAGCGAGAAGTAGATCAACTACTTCGAGGACCTGGAGCCCGATTGGTGAAGAGAAATTAAAAAGTGAAGAGAACCACGCACTCAACTTTTCTACAACAGAGAGGTGACATCCAATCAAAGCAGTATGGGAGGTGGCGAGAGATACAACATTCCAGATCGCCCGGCGCCCAAGAAGAGCCACCAGATCAGCAGGGGCAAGCAGAGAAGTCGAGACCAGAATGGAGTGGTGCATTCCGCCTCCTCAGGAGCCTTAGGGGTGCCCCATCACCACAGCCATCGCAGGGGTGAGAAGGGCACCAGCTATTCTTGGTCTCCTGAGGCGCGGCAGGCCGCGTCTGTAGACAAGAAAAATGCCTCAGTTCGTTTTGCCACACCTTATGATCAGAATTGGGAGGGTACCGTGTCCCAACTGAACAAACTTTTGTCAGCTCAGTGTGGTCAGAACTATGCTGGAGCCAAGTTTAGTGAGCCCCCATCCCCAAGTGTGCTACCCAAGCCCCCGAGCCACTGGGTGTCTCTTCCCATTGGCGCTTGCGATCATCGTGAGATGATGACCTTTCAGTTAAAGAGCCTCCTGAAGGTTCAGGCCTAAGAAGGTCACTCACTGCTGCTCTCTTAAGCCAATATATGAACGAAGGCTCCGCTTGGGCGTCTTGCCCTCCTCTTGAATGCTCCAGCTgcgtaatatattttacagctatttttaGATTTGCGTCTTAATAAGGTGATGACCATTAGGCAGGCAGATGTTTCTTCTGATGTTCACCacctaactttttttaaaaaacaactcaTGGTTATTACGTTGCTGTAGCCTTGAAGAGCGGTCGAGAAGTTTTAGCGGAGCCGTATGCCATGACAAATGATGAACTGGATGTCCTCCTTAATAACTCATTGCTCTGTTAtgctcttgttttgttttgttctttttttgatgGCTGTTTGTGACGgtcagtgtgttttttcttctcaaCTAGGCCTAGGAGTAGACAAAATCCACAGTTTCCTTGCATTGTTTTTCGCTTGCTGAGGTTTGCTGCATACTCTCGGCTTGAGTTTTAATCATGCAGGGAGTGTCAGAAACCTCTTGGTGCTAAGCACAGCAGCATTTGTAGCGTTATAGTGCATACTGCATTTCCAggtatctatttttattttgctttttgggAAGTAAAAGCCACTCGACTTCGTTCTGCAGGGAGACCCAAGCGAACAGAATACGAAGGGGAACAAGCTTAAGTGAACATAGGTCATTTGACTAACCTCAAGCCTAATGAGGTGGCACAACGGACCTTGTGCTTTCAACAcctgtacttttttttccccttcctttttttttaaatggcgcTGTGCGCATTGCACTATAGGTGTTGAAATTCTCTAAGGTTCACAAGCTCTATTGCAGCgttaaactttcttttttgcatCCCTTGTTTTAGCTTAGAAAACTAAGtgtgattttaatgtttacCAAAGCTAAGAAATCATCAATTTTCAGTTGAAACCCCCTTGCTTGACCAGATCTGGTTACAAGTGCCATAAATCATCGGGTAAGGCATTAGCGTATATCAAGGTTTTGGTTGACAAATcatttttggaatttttttttttcttctttcaactTGGCTGTACTTTTGAAATGATCACAGAGCAAATATGCGGAGGAGGGTTATGATGTGAGAACATAGATATTTTCTGTGATCTCATCTCGTAGCCTTGTTTGCTATGTGATTGTTTTGATACAGGTGTTATGTTATGAAATGTGTGTATTATGGCACGGGGGAACTGAGAAATAGGGCGCAAGTCCGGTAAGGACATgtttacattattgtttttattagaaGGCAGGCAGCcgacattatacacacacacactgccctTTCTCACTTGTTGTTATTCTTGCACTGCTGTTCATTTGTGTTCAGACGTTTCAGACAATGTTGCTCTTTCAACTGTGGATATGTGATGAAGCACCCCTTCCCACTTAGTAATGAGTGTGGTGGAAACTACCTCTCTCGCAGAACGTGATGTTAATAGCTATCTTAAAGATGACAAAACAAAGCTGATGAGTTTTGATATGTGTAATAGAGccatgtaaataatgaaatgtataaaatgttgtAGCATATTGTACATTTGTGCGGGATTGTTTGAAACCTGCAGATAaagtatttttagtaataaCACTGAATGTAAAAGCCACGCTAAGGACGTggcttgttttaaaaatgctgaagaatattttgtttaaaaaaaaaaaaaaagaaaattttgcATATAGTGCGTCAAAACCCCTGCACTGTGTGATTTGTTGCCAGTGATCTtgcacataatatttttttgtataatgcaCCATGTAGGGGCAAAGCGAGCTTTAAgtgcaagttaaaaaaaaaacattttgaaatcgAAAGggacttttatacattttgtttttgagttgcctatgcaaatagatttttaattttttttttttgcattgatatAACCCTCATTATTTTGCCCTTTTTCCAGAGTACATAAAGCAGTGTTGCATTCGCCCCAAGTCATTGGTCTTTCCTCCTTCGTCCAATGCTTGAAGccagcaaagctgcattttacCTCCAGAATGCCAGAAAgaattttaaccttttaaagtaataagtaaaaaatttttttaatagaatgtgTAAAAGTCCTTTTCCTAAATTTGGTTATCTTGAACAATTGGCTGTGAATTTATCCCAACCTTTAAAATGTCACTTGAAATGGAAACTGAAAGCCCTTTTGGTAAGAATTGAACTAAAATTGTACTCAAAGACTGTTTAATTTggttgtctaaaaaaaaaagaataaaatcctTTCCCTTCCCCCCA

Function

symbol description
pnrc2 Acts upstream of or within nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Is expressed in nervous system; otic vesicle; and trunk. Orthologous to human PNRC2 (proline rich nuclear receptor coactivator 2).

NR:

description
proline-rich nuclear receptor coactivator 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K18751 PNRC2; proline-rich nuclear receptor coactivator 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260779.1 True 3128 mRNA 0.41 3 23811951 23815789

Neighbor

gene id symbol gene type direction distance location
dop1a LOC107587763,LOC107704948,LOC107597122,LOC107700746,LOC107716858 coding downstream 276 23789106 ~ 23811675 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding downstream 24249 23752336 ~ 23787702 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding downstream 75314 23676990 ~ 23736637 (-)
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding downstream 232070 23572971 ~ 23579881 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding downstream 239634 23567058 ~ 23572317 (-)
utp11 utp11,utp11l coding upstream 268698 24084487 ~ 24087339 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding upstream 319094 24134883 ~ 24154422 (-)
dnali1 dnali1,LOC107733506,LOC107704957,LOC107587750,LOC107755261,LOC107597116,LOC107700738 coding upstream 380908 24196697 ~ 24198654 (-)
rcc1 rcc1,LOC107704965,LOC107587746,LOC107597108,LOC107700729 coding upstream 495700 24311489 ~ 24316132 (-)
LOC122360159 hivep3,LOC107704966,LOC107732829,LOC107587744,LOC107700668,LOC107755436,LOC107597126 coding upstream 556314 24372103 ~ 24430886 (-)
G115669 NA non-coding downstream 484058 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 622301 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 644011 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 734081 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 738501 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 108 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 1111 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 4730 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 228971 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 261842 24077631 ~ 24077867 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 136606 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 202110 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 287569 23519808 ~ 23524382 (-)
G115554 NA other downstream 877984 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 910764 22892102 ~ 22901187 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 501693 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 548851 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 598437 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1848930 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 2563883 26379672 ~ 26384187 (-)

Expression


Co-expression Network