brd9 (brd9,LOC107754443,LOC107659091)


Basic Information

Item Value
gene id brd9
gene name brd9,LOC107754443,LOC107659091
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27242882 ~ 27258010 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260795.1
GGAGCTGCTAGCGTTGTTGTCGCTGTTGCGGCGGCTAGACAGGAATACGAATTCGGCGAGATTTTCCTCACGTAAATAAGCGCAGAAATGGGGAAGAAGCACAAGAAACACAGGCCCGAGTGGAGAAAGGTCGAAGGAGACTATGAGGACAAACCTCTGGATAAACCCTTGAAGTTGGTGCTCAAGGTGGGCGGCAGCGAGGTGACCGAGCTCTCCGGATCCGGACATGACTCCAGTTACTATGACGACCGCTCTGACCACGAATGGGAGCGAcacaaagagaagaagaagaagaagaagaagaaatccgagaaggagaaggagaagtaTGGAGATGatgaggagaggaggaggaggaaggaggagaaaaagaaaaagcgtgAGCGAGAGCAGTCAGAAAGCGCTGCCAGCGCACCGGTGGAGCCGTTCACTCTGCCGAAGCCCGTGGAGGTGCTTCCAGAGGAGAAGAAGCGCAAGCGGGACAAATTCGAATCGGAATCGGAAGCGGATGAGTTTCATCCCGGAGTGAAAGTGGAGGTGGAGCAGCAGGCAGATCGGCCCGTACGAGCCTGTCGAACCCAGCAAGaaAACGAATCCACCCCTCGCCAGCAGCTCCTGGAGCATTTCCTGCGTTTGCTTCAGAGGAAAGACCCGCATGGCTTCTTCGCCTTCCCGGTGACCGACGCCATCGCTCCGGGGTACTCCATGATAATCAAGCATCCCATGGACTTCAGCACGATGAAGGACAAGATCGACGCCAACGAATACAAAACCATCACGGAATTCAAgGCAGACTTCAAGCTGATGTGCGACAACGCCATGGTTTACAACCGGCCGGAGACGGTTTACTACAAGGCCGCCAAGAAACTCCTCCACACGGGATTCAAGATGATGAGCAAAGAGCGGCTGTTAGCTTTGAAGCGCAGCATGTCGTTTATGCAGGACATGGATTTCTCTCAGCAGGCTGCCATTTTGGGAGATGACGACATCGCGCCCGAGGAGCCGGCGACGGAGATCCTGCCCATCCACACGGAGTACCCCAAAAAGTCCAAAAAGCAGCCTGTAAAGGAGCCCATCATCAGTGATCTGTACGAGCTGGAGGGCAACGCCTGCAGTTTGACGGACAGCACGGCGGAGGAGCACGTGCTGGCGCTGGTGGAGCACGCCGCGGACGAGGCGCGGGATCGAATCAACCGCTTCATGCCAAACTCTAAGATTGGATACCTTAAAAAAGACGCCGAAGGGTCCCTCATCTATAATGTTGTGAATCAAGATCCTGAAGCAGAAGAGGAAGAGACTCATTCTATAGATTTGAGCACTTTGGCGAATAAGCTCATCCCTGGACTGACGTCGCTGGGGTTTAAAGACGACAGGAGACACAAAGTGACGTTCCTGAGCAGCGCGTACAACACTCAGACGCTTCAGAACAACTCCGTGTATCCCGACCTGCTCCCCGAGGAGATGGACACGCTGTACTCGGCTTACGGAGACGAGACCGGTGTCCAGTGTGCTCTCAGtCTGCAGGAGTTTGTTAAAGGTTGTGGGAGTTTCACCAGGAGACTTGTGGATGATCTTCTGGATAAAATGACGGCGGGCGATCATTCGAAAGCCATCATCCAAATCCGTCAGAAAAGAAACTTGCCGATCGACGACACTAAATCTAGTTTATGTGACATGCCGGGGCCCGATGGAGCCGGCGTGGAGTCCGGGTCGGTGCTGGACTTCATGTCCATGAAGAGCTACCCGGACGTGTCTCTGGAGATGCTCAGCACGCTAGGTAAATGTGTGAAGAAGGAGCCGGAGCACGAAGACGGACATCAGCACTTCGAGGACGCCGCTAAGCTCCTGCAGGAGTTTCAGGACGCGGCGGTGGACCGAGTCGGATCCCGACCCTCGTCCAATCTCTCGTCTCTGTCAAACACTTCAGAGCGGGAGCAGCACCATTTAGGAAGCTCGCCTCATCTGGGCGTCGGAGATCAGACAGAGATGGTTCAGGACCCGTACGAGTTTCTTCAGTCTCCAGAGCCTGGCTCTACTGCCAACAGCTGATGGGACGCGCTGTAACGATCTGCTTTTCTAAAGGACTGTAAGCTTGTACAGATTCACTGCATCAcgtctttgtttttaaataaacgctcTGTGTACGATTCTCTTTTTA
>XM_043260796.1
GGAGCTGCTAGCGTTGTTGTCGCTGTTGCGGCGGCTAGACAGGAATACGAATTCGGCGAGATTTTCCTCACGTAAATAAGCGCAGAAATGGGGAAGAAGCACAAGAAACACAGGCCCGAGTGGAGAAAGGTCGAAGGAGACTATGAGGACAAACCTCTGGATAAACCCTTGAAGTTGGTGCTCAAGGTGGGCGGCAGCGAGGTGACCGAGCTCTCCGGATCCGGACATGACTCCAGTTACTATGACGACCGCTCTGACCACGAATGGGAGCGAcacaaagagaagaagaagaagaagaagaagaaatccgagaaggagaaggagaagtaTGGAGATGatgaggagaggaggaggaggaaggaggagaaaaagaaaaagcgtgAGCGAGAGCAGTCAGAAAGCGCTGCCAGCGCACCGGTGGAGCCGTTCACTCTGCCGAAGCCCGTGGAGGTGCTTCCAGAGGAGAAGAAGCGCAAGCGGGACAAATTCGAATCGGAATCGGAAGCGGATGAGTTTCATCCCGGAGTGAAAGTGGAGGTGGAGCAGCAGGCAGATCGGCCCGTACGAGCCTGTCGAACCCAGCAAGaaAACGAATCCACCCCTCGCCAGCAGCTCCTGGAGCATTTCCTGCGTTTGCTTCAGAGGAAAGACCCGCATGGCTTCTTCGCCTTCCCGGTGACCGACGCCATCGCTCCGGGGTACTCCATGATAATCAAGCATCCCATGGACTTCAGCACGATGAAGGACAAGATCGACGCCAACGAATACAAAACCATCACGGAATTCAAgGCAGACTTCAAGCTGATGTGCGACAACGCCATGGTTTACAACCGGCCGGAGACGGTTTACTACAAGGCCGCCAAGAAACTCCTCCACACGGGATTCAAGATGATGAGCAAACAGGCTGCCATTTTGGGAGATGACGACATCGCGCCCGAGGAGCCGGCGACGGAGATCCTGCCCATCCACACGGAGTACCCCAAAAAGTCCAAAAAGCAGCCTGTAAAGGAGCCCATCATCAGTGATCTGTACGAGCTGGAGGGCAACGCCTGCAGTTTGACGGACAGCACGGCGGAGGAGCACGTGCTGGCGCTGGTGGAGCACGCCGCGGACGAGGCGCGGGATCGAATCAACCGCTTCATGCCAAACTCTAAGATTGGATACCTTAAAAAAGACGCCGAAGGGTCCCTCATCTATAATGTTGTGAATCAAGATCCTGAAGCAGAAGAGGAAGAGACTCATTCTATAGATTTGAGCACTTTGGCGAATAAGCTCATCCCTGGACTGACGTCGCTGGGGTTTAAAGACGACAGGAGACACAAAGTGACGTTCCTGAGCAGCGCGTACAACACTCAGACGCTTCAGAACAACTCCGTGTATCCCGACCTGCTCCCCGAGGAGATGGACACGCTGTACTCGGCTTACGGAGACGAGACCGGTGTCCAGTGTGCTCTCAGtCTGCAGGAGTTTGTTAAAGGTTGTGGGAGTTTCACCAGGAGACTTGTGGATGATCTTCTGGATAAAATGACGGCGGGCGATCATTCGAAAGCCATCATCCAAATCCGTCAGAAAAGAAACTTGCCGATCGACGACACTAAATCTAGTTTATGTGACATGCCGGGGCCCGATGGAGCCGGCGTGGAGTCCGGGTCGGTGCTGGACTTCATGTCCATGAAGAGCTACCCGGACGTGTCTCTGGAGATGCTCAGCACGCTAGGTAAATGTGTGAAGAAGGAGCCGGAGCACGAAGACGGACATCAGCACTTCGAGGACGCCGCTAAGCTCCTGCAGGAGTTTCAGGACGCGGCGGTGGACCGAGTCGGATCCCGACCCTCGTCCAATCTCTCGTCTCTGTCAAACACTTCAGAGCGGGAGCAGCACCATTTAGGAAGCTCGCCTCATCTGGGCGTCGGAGATCAGACAGAGATGGTTCAGGACCCGTACGAGTTTCTTCAGTCTCCAGAGCCTGGCTCTACTGCCAACAGCTGATGGGACGCGCTGTAACGATCTGCTTTTCTAAAGGACTGTAAGCTTGTACAGATTCACTGCATCAcgtctttgtttttaaataaacgctcTGTGTACGATTCTCTTTTTA
>XM_043260797.1
GGAGCTGCTAGCGTTGTTGTCGCTGTTGCGGCGGCTAGACAGGAATACGAATTCGGCGAGATTTTCCTCACGTAAATAAGCGCAGAAATGGGGAAGAAGCACAAGAAACACAGGCCCGAGTGGAGAAAGGTCGAAGGAGACTATGAGGACAAACCTCTGGATAAACCCTTGAAGTTGGTGCTCAAGGTGGGCGGCAGCGAGGTGACCGAGCTCTCCGGATCCGGACATGACTCCAGTTACTATGACGACCGCTCTGACCACGAATGGGAGCGAcacaaagagaagaagaagaagaagaagaagaaatccgagaaggagaaggagaagtaTGGAGATGatgaggagaggaggaggaggaaggaggagaaaaagaaaaagcgtgAGCGAGAGCAGTCAGAAAGCGCTGCCAGCGCACCGGTGGAGCCGTTCACTCTGCCGAAGCCCGTGGAGGTGCTTCCAGAGGAGAAGAAGCGCAAGCGGGACAAATTCGAATCGGAATCGGAAGCGGATGAGTTTCATCCCGGAGTGAAAGTGGAGGTGGAGCAGCAGGCAGATCGGCCCGTACGAGCCTGTCGAACCCAGCAAGaaAACGAATCCACCCCTCGCCAGCAGCTCCTGGAGCATTTCCTGCGTTTGCTTCAGAGGAAAGACCCGCATGGCTTCTTCGCCTTCCCGGTGACCGACGCCATCGCTCCGGGGTACTCCATGATAATCAAGCATCCCATGGACTTCAGCACGATGAAGGACAAGATCGACGCCAACGAATACAAAACCATCACGGAATTCAAgGCAGACTTCAAGCTGATGTGCGACAACGCCATGGTTTACAACCGGCCGGAGACGGTTTACTACAAGGCCGCCAAGAAACTCCTCCACACGGGATTCAAGATGATGAGCAAAGCTGCCATTTTGGGAGATGACGACATCGCGCCCGAGGAGCCGGCGACGGAGATCCTGCCCATCCACACGGAGTACCCCAAAAAGTCCAAAAAGCAGCCTGTAAAGGAGCCCATCATCAGTGATCTGTACGAGCTGGAGGGCAACGCCTGCAGTTTGACGGACAGCACGGCGGAGGAGCACGTGCTGGCGCTGGTGGAGCACGCCGCGGACGAGGCGCGGGATCGAATCAACCGCTTCATGCCAAACTCTAAGATTGGATACCTTAAAAAAGACGCCGAAGGGTCCCTCATCTATAATGTTGTGAATCAAGATCCTGAAGCAGAAGAGGAAGAGACTCATTCTATAGATTTGAGCACTTTGGCGAATAAGCTCATCCCTGGACTGACGTCGCTGGGGTTTAAAGACGACAGGAGACACAAAGTGACGTTCCTGAGCAGCGCGTACAACACTCAGACGCTTCAGAACAACTCCGTGTATCCCGACCTGCTCCCCGAGGAGATGGACACGCTGTACTCGGCTTACGGAGACGAGACCGGTGTCCAGTGTGCTCTCAGtCTGCAGGAGTTTGTTAAAGGTTGTGGGAGTTTCACCAGGAGACTTGTGGATGATCTTCTGGATAAAATGACGGCGGGCGATCATTCGAAAGCCATCATCCAAATCCGTCAGAAAAGAAACTTGCCGATCGACGACACTAAATCTAGTTTATGTGACATGCCGGGGCCCGATGGAGCCGGCGTGGAGTCCGGGTCGGTGCTGGACTTCATGTCCATGAAGAGCTACCCGGACGTGTCTCTGGAGATGCTCAGCACGCTAGGTAAATGTGTGAAGAAGGAGCCGGAGCACGAAGACGGACATCAGCACTTCGAGGACGCCGCTAAGCTCCTGCAGGAGTTTCAGGACGCGGCGGTGGACCGAGTCGGATCCCGACCCTCGTCCAATCTCTCGTCTCTGTCAAACACTTCAGAGCGGGAGCAGCACCATTTAGGAAGCTCGCCTCATCTGGGCGTCGGAGATCAGACAGAGATGGTTCAGGACCCGTACGAGTTTCTTCAGTCTCCAGAGCCTGGCTCTACTGCCAACAGCTGATGGGACGCGCTGTAACGATCTGCTTTTCTAAAGGACTGTAAGCTTGTACAGATTCACTGCATCAcgtctttgtttttaaataaacgctcTGTGTACGATTCTCTTTTTA

Function

symbol description
brd9 Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Is expressed in brain and liver. Orthologous to human BRD9 (bromodomain containing 9).

NR:

description
PREDICTED: bromodomain-containing protein 9

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0070577 lysine-acetylated histone binding molecular_function

KEGG:

id description
K22184 BRD9; bromodomain-containing protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260795.1 True 2158 mRNA 0.54 17 27242882 27258010
XM_043260796.1 False 2098 mRNA 0.54 17 27242882 27258010
XM_043260797.1 False 2095 mRNA 0.54 17 27242882 27258010

Neighbor

gene id symbol gene type direction distance location
zdhhc11 NA coding downstream 143 27229786 ~ 27242739 (-)
LOC122361070 tppp,LOC107659066,LOC107677661,LOC107565752,LOC107754442,LOC107601987 coding downstream 14314 27214090 ~ 27228568 (-)
spire1b spire1,LOC107565753,LOC107677663,LOC107601988,LOC107659090 coding downstream 38589 27180637 ~ 27204293 (-)
LOC122361113 NA coding downstream 164267 27075504 ~ 27078615 (-)
LOC122361111 atp6v1c1a,atp6v1c1,LOC107601989,LOC107729816,LOC107659089,LOC107565754,LOC107724997 coding downstream 272942 26957641 ~ 26969940 (-)
si:ch211-269k10.4 NA coding upstream 117891 27375901 ~ 27381789 (-)
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding upstream 280383 27538393 ~ 27558972 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding upstream 355763 27613773 ~ 27621631 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding upstream 370547 27628557 ~ 27630274 (-)
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding upstream 373756 27631766 ~ 27637531 (-)
G116711 NA non-coding downstream 1791 27240615 ~ 27241091 (-)
G116710 NA non-coding downstream 2743 27238986 ~ 27240139 (-)
G116696 NA non-coding downstream 29269 27153346 ~ 27213613 (-)
G116700 NA non-coding downstream 85392 27155095 ~ 27157490 (-)
G116666 NA non-coding downstream 368522 26817032 ~ 26874360 (-)
G116721 NA non-coding upstream 41484 27299494 ~ 27307565 (-)
G116723 NA non-coding upstream 49766 27307776 ~ 27308221 (-)
G116730 NA non-coding upstream 109822 27367832 ~ 27371377 (-)
G116748 NA non-coding upstream 114519 27372529 ~ 27375167 (-)
G116733 NA non-coding upstream 120550 27378560 ~ 27489679 (-)
LOC122360878 NA other downstream 244523 26993974 ~ 26998359 (-)
G116677 NA other downstream 287048 26954220 ~ 26955834 (-)
G116668 NA other downstream 366272 26874398 ~ 26876610 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other downstream 429908 26810317 ~ 26812974 (-)
G116654 myom3,LOC107659064,LOC107729819 other downstream 433736 26807120 ~ 26809146 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other upstream 100697 27358707 ~ 27360829 (-)
LOC122360079 NA other upstream 262180 27520190 ~ 27579866 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other upstream 364619 27622629 ~ 27627660 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 449706 27707716 ~ 27804770 (-)
G116868 NA other upstream 705478 27963488 ~ 27964958 (-)

Expression


Co-expression Network