G10642


Basic Information

Item Value
gene id G10642
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 16015389 ~ 16105717 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU11720
CTGTTATTCATCGGCACTGACTAGTTATATGTAAACTATAACTCTTTGGCTACAAAATGGTCATTTTATTATGAAATATGAAGACAGGAATCTTTGGTTCTTCATAAAATATCTTTGGTACAATATGACAAATAATCTGCACAAGTTACAGGTTTTACATTGTAGATCATGGGAAATGAAGACATAAATTTGGTCTGTGTTTTTTCATGTGCCCAAATAGCATTTGTTCCAGCTTAAACCATGCAAACATGCTACAGGTATATCAAATACAACAACCAAAAACAATAAAAAGAAATACAAAATGTTAATAAAAAAGTGTTAACCAACATCTGATTCAAATAACTCAGATTGAAATTCCAAAACAGAAGTCGAATGAATATCCAAAACATATGAAGTGCCATAACAAATCGCTGTCATCAAGTTGTGATATTTAAAAAACATTGCTCTTCATCCAAGGGTCTTTGGCATGTGAAAAAGTTGCAATGCAAATTGTTTTTGTTGCCTGGATTTTCTTAGTCTTCTAATTATCTCTCCACCGCAAAAAATAAGACATTGAACGGAGTGTTTCCATCCTCTTAAAGTGGTGGAGATTAAAATGAATTACAGTTTTACATTGCAGAGCTACGTTTACTGAAGACGAGGCATTATTCTGCTGCTCTGACTTCTCAGGACCTTCTGGAAGAGTTCATCTGTAATGTGACAAGAAATATATTAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU11720 True 716 lncRNA 0.34 2 16015389 16105717

Neighbor

gene id symbol gene type direction distance location
CI01000000_15977372_15989083 STARD10 coding downstream 26082 15977090 ~ 15989307 (-)
CI01000000_15934482_15962471 ARAP3 coding downstream 51213 15934381 ~ 15964176 (-)
CI01000000_15906519_15916121 NA coding downstream 98661 15906196 ~ 15916728 (-)
CI01000000_15875749_15884489 EEF1G, EF-1G, EF1G coding downstream 130900 15875749 ~ 15884489 (-)
CI01000000_15829395_15841876 NA coding downstream 171318 15828841 ~ 15844071 (-)
CI01000000_16167132_16171442 CCDC69 coding upstream 61335 16167052 ~ 16171442 (-)
CI01000000_16188243_16189302 NA coding upstream 82442 16188159 ~ 16189302 (-)
CI01000000_16191231_16195841 GM2A coding upstream 85144 16190861 ~ 16195841 (-)
CI01000000_16302021_16337921 SLC36A1 coding upstream 194924 16300641 ~ 16337921 (-)
CI01000000_16354158_16360016 NA coding upstream 248242 16353959 ~ 16360213 (-)
G10674 NA non-coding downstream 7005 16007692 ~ 16008384 (-)
G10702 NA non-coding downstream 15218 15999966 ~ 16000171 (-)
G10698 NA non-coding downstream 17725 15997464 ~ 15997664 (-)
G10649 NA non-coding downstream 82013 15933039 ~ 15933376 (-)
G10685 NA non-coding downstream 87109 15928068 ~ 15928280 (-)
G10764 NA non-coding upstream 105894 16211611 ~ 16212215 (-)
G10668 NA non-coding upstream 135803 16241520 ~ 16254522 (-)
G10669 NA non-coding upstream 150802 16256519 ~ 16260121 (-)
G10825 NA non-coding upstream 369313 16475030 ~ 16475373 (-)
CI01000000_14200000_14436182 TENM2 other downstream 1516795 14200000 ~ 14436253 (-)
G9602 NA other downstream 1668855 14341002 ~ 14346534 (-)
G9036 NA other downstream 2288299 13726800 ~ 13727090 (-)
G8699 NA other downstream 2703960 13272585 ~ 13311429 (-)
G8125 NA other downstream 4974480 11040269 ~ 11040909 (-)
G10672 NA other upstream 120570 16226287 ~ 16231126 (-)
G11107 NA other upstream 561401 16667118 ~ 16667947 (-)

Expression


Co-expression Network