XLOC_006715 (pgam1a)


Basic Information

Item Value
gene id XLOC_006715
gene name pgam1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 31393192 ~ 31397987 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012934
TGGCTCTGATGTATCTGATCTACATCCAACGAAATGACAGAAAGGAAGTCCAGACACGCACCGGGTCGTTTTAgttcaatcatttttttattctgctCATGTCTGGTGGTGTCGATGACACTGTGATGAAATATTTTGTACTctgcttcttttttatttaaaccaaGAAAATGCTGAAAGAAGTTCACTGTAAATAGGCAGGGGTTTAACTGGAAGGTCACGGTTTTTTCCATTTCGTGTTTGCAGTTTCACGTGGTTGCTCATCGTCCCGGGGCGCTGATTGGCTGAGCGCAGAGATGGGGAGGTCGGAAACGTCTTCATTAGACTCTCGGATGAGAGGAGGGTCTTTTTGACAGTAGTCTTGACAGAGTCTAACAACCTGTTCGCTCGCCGTCCTTTCTTCAGCTACTACCGTTAGTATTTGTCTGTATTCATTTCCCAAATGGCTGCATACAAGCTGGTTCTCATTCGCCATGGCGAGAGCTGCTGGAACCAAGAGAATCGATTCTGTGGCTGGTTTGACGCGGACCTGAGCGAGACAGGGGCTCAGGAGGCGAAGAGAGGAGGTCAAGCTTTAAAGGATGCAGGGTTTGAGTTTGACATTTGTTACACCTCTGTGCTGAAGAGGGCCATCCGGACACTGTGGATTGTTCTGGACAGTATTGATCAGATGTGGCTGCCTGTGCACAGGACCTGGCGGCTGAATGAACGCCATTACGGTGGTCTCACTGGGTTAAACAAGGCCGAAACTGCAGCCAAGCATGGTGAAGCCCAGGTTAAAATTTGGAGGCGCTCCTATGACATTCCACCACCCAGTATGGATGAAGATCATGACTTTTACAGCATCATCAGCAAGGACCGACGTTATGGTGATCTGACTGAGGACCAGCTGCCTTCTTGTGAGAGTCTGAAGGACACTATTGCACGTGCTCTGCCTTTCTGGAATGATGAAATTGTGCCTCAAATCAAGGAGGGAAAGCGGGTGTTGATTGCCGCTCATGGAAACAGTTTGAGAGGCATTGTGAAGCACTTAGAAGGAATGTCTGAGGAGGCCATCATGGAGCTGAATCTGCCCACAGGGATCCCTATTCTTTACGAGCTGGACAAGAACCTGAAGCCCATCAAGCCCATGCAGTTCCTCGGGGATGAGGAAACCGTTCGCAAAGCCATGGAGGCTGTGGCAGCTCAGGGCAAAGCCAAGAAATAGAGTATTTACATGAACAACTTTTAAATTATACATCAGCACTGAATTACTTTAAACAAGGCTCCTATATTTACCATCAAGACGGTGCTCTATAGGAGAAGGATGtacaagttaaaataaatataggACCTATAAAGTATGTAACCAGCTTGTAATTCTTTGGaatgttgtgaaatatttattaGTTAAACAGTTTACAAGGACCACATTTTTGTTTGGATTTGTCTCTGTGTGATTCATTCCATAATTTACGTCgtctacactttattttgaagaatgtgttTGGTCGTGTTTTCTCAAGCACACAGATTTTCACATTAAACCATTgtcaaaactaaaacaa
>TCONS_00012935
GTGCAGTACAGGACGTGATTTTATTCACGTGCTGAATTTCTCAATCAGGATCCATAAAATGAATTTCTAACTAATTTTCAGCTAATGTTATgaaatttaatacaaatattgTACTAAAAAttgaaaacacattaaatataatgtgttatatattaataaaatataacaccCCGCTCTTCCTCAAATGTCATAATGGGTctataatgtaaaaaatgtgtgttttgcAGATGCAGGGTTTGAGTTTGACATTTGTTACACCTCTGTGCTGAAGAGGGCCATCCGGACACTGTGGATTGTTCTGGACAGTATTGATCAGATGTGGCTGCCTGTGCACAGGACCTGGCGGCTGAATGAACGCCATTACGGTGGTCTCACTGGGTTAAACAAGGCCGAAACTGCAGCCAAGCATGGTGAAGCCCAGGTTAAAATTTGGAGGCGCTCCTATGACATTCCACCACCCAGTATGGATGAAGATCATGACTTTTACAGCATCATCAGCAAGGACCGACGTTATGGTGATCTGACTGAGGACCAGCTGCCTTCTTGTGAGAGTCTGAAGGACACTATTGCACGTGCTCTGCCTTTCTGGAATGATGAAATTGTGCCTCAAATCAAGGAGGGAAAGCGGGTGTTGATTGCCGCTCATGGAAACAGTTTGAGAGGCATTGTGAAGCACTTAGAA

Function

symbol description
pgam1a Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Orthologous to several human genes including PGAM1 (phosphoglycerate mutase 1).

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0004082 bisphosphoglycerate mutase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1827 Predicted to enable bisphosphoglycerate mutase activity; hydrolase activity; and phosphoglycerate mutase activity. Predicted to act upstream of or within glycolytic process. Orthologous to several human genes including PGAM1 (phosphoglycerate mutase 1).

Ensembl:

ensembl_id ENSDARG00000005423

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012934 False 1547 mRNA 0.45 4 31393192 31397987
TCONS_00012935 True 682 lncRNA 0.42 2 31394711 31397088

Neighbor

gene id symbol gene type direction distance location
XLOC_006714 zdhhc16a coding downstream 3531 31379784 ~ 31389661 (-)
XLOC_006713 ubtd1a coding downstream 14509 31371536 ~ 31378683 (-)
XLOC_006712 rrp12 coding downstream 23008 31343326 ~ 31370184 (-)
XLOC_006711 prdm8 coding downstream 96834 31292700 ~ 31296358 (-)
XLOC_006710 CR931802.1 coding downstream 187999 31193485 ~ 31205193 (-)
XLOC_006716 rtn1a coding upstream 26599 31424586 ~ 31470439 (-)
XLOC_006717 dhrs7 coding upstream 138722 31536709 ~ 31544365 (-)
XLOC_006718 BX537123.2 coding upstream 181461 31579448 ~ 31579564 (-)
XLOC_006719 six1a coding upstream 221974 31619961 ~ 31622195 (-)
XLOC_006720 six4a coding upstream 238745 31636732 ~ 31647323 (-)
XLOC_006471 BX537274.2 misc downstream 21128287 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 30566967 825904 ~ 826225 (-)
XLOC_006708 CR931802.2 non-coding downstream 266146 31126449 ~ 31127046 (-)
XLOC_006707 NA non-coding downstream 270354 31102907 ~ 31122838 (-)
XLOC_006706 NA non-coding downstream 300792 31089586 ~ 31092400 (-)
XLOC_006705 BX005005.1 non-coding downstream 317245 31075833 ~ 31075947 (-)
XLOC_006722 BX537123.1 non-coding upstream 296944 31694931 ~ 31695047 (-)
XLOC_006723 NA non-coding upstream 402045 31800032 ~ 31800406 (-)
XLOC_006727 NA non-coding upstream 552170 31950157 ~ 31955798 (-)
XLOC_006728 NA non-coding upstream 585074 31983061 ~ 31999012 (-)

Expression


Co-expression Network