cnot3a (cnot3a,LOC107711735,LOC107587779,LOC107700763,LOC107552836,LOC107704926)



Basic Information


Item Value
gene id cnot3a
gene name cnot3a,LOC107711735,LOC107587779,LOC107700763,LOC107552836,LOC107704926
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23306694 ~ 23314761 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043260897.1
GTGGGCGGAGCCTGCCGTCCATCTTTTAAACTGGACAGAAGGGGGATTGACGAGCTGAAAACATTACCAAATTTGAAATAAGGAATTGGCGGATATTTTGGTCGTGGCTGTCACAAAGAGATACTGACGAATATTACACACTTTTGAAAAAGTGACAGAAGGTATGAAGACAGTATCATAGCGAAGCCATGGCTGATAAGAGAAAACTACAAGGTGAAATAGATCGATGTTTGAAAAAAGTTGCGGAAGGCGTCGAACAGTTTGAAGACATTTGGAAAAAGCTTCACAATGCAGCCAATGCCAACCAGAAGGAAAAATACGAGGCTGATCtcaagaaagaaattaaaaagctCCAGCGGCTACGAGACCAGATTAAGACATGGGTGGCATCCAATGAGATCAAAGACAAACGGCAGCTAGTGGAGAACCGGAAGCTTATTGAAACGcAAATGGAGCGATTTAAGGTGGTTGAAAGAGAAACCAAGACAAAGGCCTACTCTAAAGAGGGGCTGGGCTTGGCTCAGAAAGTAGACCCAGCGCAGAAAGAGAAGGAGGAAACGGAACAGTGGCTCACGAACACAATAGACACTTTGAACATGCAGGTGGACCAGTTTGAAAGTGAAGTTGAGTCCCTCTCTGTTCAAACACGGAAAAAGAAAGGGGACAAGGAGAAACAGGATCGGATTGAAGAGCTAAAGAGGTTAATCGAAAGACACCGGTACCACATTCGTATGCTAGAGACCATCTTGCGGATGTTGGATAATGATTCGATCCAGGTTGAAGCTATCCATAAGATCAAAGATGATGTGGAATATTACATTGACTCTTCGCAAGACCCAGACTTTGAAGAGAATGAGTTCCTCTACGATGATCTAGATTTGGAAGACATACCGGCAACATTGATGGCGACGTCTCCTCAGGGCCATATTGAAGATGAGATGTTCCTTCAGTCCAGCAGCACACCGACCTCCACCACTTCCTCTTCTCCCATCCCTCCATCTCCTGCCACAGGCACAACGGAGATTTCGGAGGATAAGAGAGGTCGATCGACAGACAGTGAAGTCAGTCAGTCTCCTGTGAAGAACGGCAACCCATCTCTCTCGTCCTTCTCCTCATCCGCCTCCTcaggctcctcctcctcctcctcttcgcTGGTTTCTATGGCTACTGTTGTTGGTGGCTGCACAGCGGTCTCTGGGGGCAGCAGTCTGCTGGGAAGCTTTAGCAGCGCAGTGCAGCAGCATGTTCCACAGTCTCAACAGCAAGCACAGGTCAAACTCACCTCAACATCTGCTCCCTCCAACAACACGCCTAGTCCACCTAGCCACCCCACGCTACCTGCCTCCACTACTTCCTCTCTGCCTAGTTCCAGCACACCTGGCCCAGTTACTTCCAATTCCCAGTCCCAGGCTACATCTGTTCCTGGGGTTGAGGGCTCTAGACTGGGTTTGGGCCTGGGGAAAGGGGGTGTGACGGTGACCAGCAGCAGTAGTGGCACTCAGATACCGGGTCTGGGCATGTCCGGCATATCTGGTTCACTCAGCACCATGGCAGGGCTTCTCTCAGGCTCTACCCCTGCCCCCTATGCCCAGGCGGCTGCAGGTGGAACAGCAGGTAGTGTCCCCAGTGGTCCGGTGGGCAGTGGCAGTGGCAGTGTAAGTTCTGGGATATCTGTACCGAATACAGGTGCAGGGGGAGCAAACACGGGAGCAACCAGTAATGGTACTGGTACAGGTGCTGGTATAGGCTTGCTAGGGTCCAGTCCAGGTCACGGTACCCTAACTGGAGGAATTCTGAACCTGGTACCGGGGCAGACTGCTCTCCAGGGGTCTGCACAGATACCTGTAAGCCTTGTGGGCACAGCGCCTGGAGGAGGAACTGGAGAGAGTGGATTGGGTGGAAATGGAAGCAGTTCTGTGGCGAGTGCAGGAGCGGGGACAAACATAGCTCCTGCAAGACCCCCTAGTGGCCTCAAACAAAATGGAGCAACCAGCTACAGTGCTGTAGTTGCAGACAACACACCAGACTCCTCACTCAGCAGTGCCAGCCAATCACAAAACAGCCATTCCTCATCCTCGAGCTCATCAACAAATCAAACTCTGGATAATGGCCCCAGTTTATTGAGTTCTATCACTCTACCCCCCTCCTCCCCATCACCTGCTTTCACTGACAGCACACCTGGTGGTGGGAGTCTGCTAAACGGCCCACACTCCTACACACTCAACACAGAAGCCATCAAGGCTCCTGAACCACCAAGCTCTTTAAAAGCTATGGCCGAACGGGCGGCACTGGGATTGACACTGGATGGAGAGATTTCATCACTACACCTCCCAGATCGAGCCCCACCTGGACCCACAACGGCTCCTCAGCCTGCTGTTTCAGAGGTCAACCTGCCTCCATCTTTAGGGGCATGTCCGTTAGGCCCCACCCCTCTCACTAAAGAGCAGCTTTACCAACAGGCAATGCAGGAGGCAGCATGGACACACATGCCCCACCCGTCCGATTCAGAGAGAATCAGGCAGTACCTGATGAGAAACCCATGTCCTACACCGCCATTCCACCACCAGGTGCCCCCACATCATTCGGACTCTATTGAGTTCTACCAGAGATTGTCCACTGAAACGCTCTTCTTCATTTTCTACTACTTGGAGGGCACAAAGGCACAGTACCTGTCGGCTAAAGCACTGAAGAAGCAATCGTGGAGGTTCCACACCAAATACATGATGTGGTTCCAAAGGCACGAGGAACCCAAGACCATCACTGATGAGTTTGAACAGGGCACGTACATTTACTTTGACTATGAAAAGTGGGGCCAGAGAAAAAAGGAAGGATTTACGTTCGAGTACAGATACCTGGAGGACAGAGACCTACAGTGACTGACGGAGgaagagacggagagagagagcgattgCTACGACAGAGAAAACGCTGCTGTTGACATTCCGAGATGAACTCCATGTCGTGGTTAAAGTTGGATGTGATGTTggcctttttcttttaaaagagagagagagagagagagagagctggggGTCGAGTGCCTGTTTACATGCAAACATTTGAACCTCCTTCAACGTTGAGTCTTTATCCCCTTCATTTCTGTTCTAACTGAAAGCCCAATCTAGTCAAGCGACAGAAATTAAAGGAAACAATTTGGTTTGGCCACAGACAAAACATTTTGCTCGTAGTTTGTGTTTGGTGGAGTGCTGCATTAGCGAGTCTTATCCTCTTAGATGACATATACTGACTATGATGTACCGGCACTATGCGAGATCCCGAGTCTAATGCATCGATTGGTTGTTCTTAGTTCATTGAGCCCCTCTGGGAGTGTTTAGGCACTGTGACTTTGCCTTGCGAGATAACGTGTCGACCATTAAATTGCTATGCAATTGAATTCCTCTCGACCTCCCTACCTTTATCATGACCTAAATGTGGTTTTGCTAGACCGCAAAAAAAGTCGGCGTTGATAGGGTAATGTTCTGTAGCATCTATCTTACATATGTTCACAAGCAAGGTGGGTTGAAGTTGTCAGCCTTCAAAGTGGCGTGTGATTATTTGTCTGTTAAACATGGCATGAGTGATCTCACttcaaaaatatctaataaaaagacaaagatTAAAGTATGTACAAGTTAAAAaccttatttttctttctttcagcgTCCTTTAGGTTGTCCATGgctgaatatttttgttgtgtggAAGTGTGcatgtaaagtaaaacaaaagccTTCCCCAAACTTTCCTCAGTTTTTGATGTCACTTTCACAATGATTCCCACATACTCTGCTGGACAGTTTccctaaataaaaacaaaatgttgttcTGTTGCTCCATTTATTAGGCAAAGCTTTTCCAAGCACCCCACATTGTGACACGGTCCCATGCGAGTTTCCATTCATTTCAGTTTCCTCTATTGTTTGGGGAGAACAACAGGCTCGACCAACACACAAGATGACATAAAtgtgatgaaatgaaaagtatttttgatGCACAGGGCAGCTGATTGCATTTGTCTATTTCTCTCCAGTAATAAACACCATCATCCTTGCCTTTTTTGACATGGACAGGACAGCATGCGATTGTGATGTCGCTTCGTAGGTTGAGAGGAAACAAAAAACAGAGTTgtaaaatttcaataaaatactTTTGTGATGCAA

Function


symbol description
cnot3a Acts upstream of or within digestive tract development. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Is expressed in several structures, including gut; head; heart; integument; and testis. Orthologous to human CNOT3 (CCR4-NOT transcription complex subunit 3).

NR:

description
CCR4-NOT transcription complex subunit 3 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12580 CNOT3, NOT3; CCR4-NOT transcription complex subunit 3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043260897.1 True 4160 mRNA 0.48 18 23306694 23314761

Neighbor


gene id symbol gene type direction distance location
LOC122359881 LOC107716830,LOC107587785,LOC107682987 coding downstream 40222 23264286 ~ 23266472 (-)
LOC122360080 NA coding downstream 44740 23258003 ~ 23261954 (-)
LOC122359973 LOC107672119,LOC107552844,LOC107704924,LOC107716832 coding downstream 52118 23251560 ~ 23254576 (-)
styk1b LOC107587900,LOC107714598,LOC107724775,LOC107704922,LOC107672192,LOC107552846 coding downstream 56897 23244256 ~ 23249797 (-)
rap1gapl si:ch1073-90m23.1,LOC107724779,LOC107587789,LOC107672182,LOC107704921,LOC107714601 coding downstream 72906 23224070 ~ 23233788 (-)
kpna5 kpna5,LOC107704934,LOC107716841,LOC107552832,LOC107711738 coding upstream 24690 23339451 ~ 23348014 (-)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695,LOC107552826 coding upstream 43712 23358473 ~ 23361374 (-)
calhm5.1 LOC107704861,LOC107716815,LOC107587898,LOC107711741,LOC107552825 coding upstream 47576 23362337 ~ 23367373 (-)
calhm6 fam26f,LOC107700692,LOC107552824,LOC107716816 coding upstream 52740 23367501 ~ 23368953 (-)
mms22l mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675 coding upstream 74662 23389423 ~ 23403630 (-)
G115631 NA non-coding downstream 117044 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 138754 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 228824 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 233244 23072259 ~ 23073450 (-)
G115601 rcc1,LOC107597108,LOC107700729,LOC107704965 non-coding downstream 250164 23056095 ~ 23056530 (-)
G115669 NA non-coding upstream 11447 23326208 ~ 23327893 (-)
G115910 NA non-coding upstream 501136 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 502139 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 505758 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 729999 24044760 ~ 24057262 (-)
G115554 NA other downstream 372727 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 405507 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1217602 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1338159 21964855 ~ 21968535 (-)
G115149 NA other downstream 1502890 21801475 ~ 21803804 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other upstream 205047 23519808 ~ 23524382 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other upstream 268232 23582993 ~ 23609841 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 353304 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 1002721 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 1049879 24364640 ~ 24369566 (-)

Expression



Co-expression Network