prelid3a (prelid3a,LOC107715058,LOC107723525)


Basic Information

Item Value
gene id prelid3a
gene name prelid3a,LOC107715058,LOC107723525
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 15959669 ~ 15963708 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260913.1
TATTGGTAGCTGCTTTTCTAACAGGGAGGTTCCGCTGCACTTGATTAGATGAGGAGCATCTCGAAGCCGGTATGATGGAAGCAGAGCGAGAAAATACGAATGCATGAGATTTACAGTCCACCGTCGTTTGGAGGCACTTTCTAACTGTCGCAAAAATGAAGATTTGGAGCACCGAGCACATATTCAGCTACCCTTGGGAGACCGTGATCAAAGCGGCTATGAGGAAGTATCCTAATCCGATGAACCCTAGTGTCGTCGGGGTGGACGTTCTTGACAGGAACTTGGACACAAATGGACGTCTTCACAGTCATCGGCTGCTCAGCACGGAGTGGGGGCTTCCAGCAGTCGTCAGAGCGattttagggACAAATCGGACCGTCACATATGTAAAAGAGCATTCCATTGTGGacccagaagagaaaaaaatggagCTTTGCTCAACGAACATAACCCTAACTAATTTAATATCAGTTGATGAAAGGCTTGTCTACAGGCCCCATCCAGAAAATCCAGAGGTCACTGTATTAACCCAAGAGGCGATCATCACCGTGAAGGGGGTCAGTCTGAGCAGCTATCTTGAGGGACTGATGGCTCTAACCATGTCAGCTAATGCAAGAAAGgGATGGGACGCAATTGAATGGATCATTCAAAACTCTGAAAGGGAAAATGTCCCTTTGTGTGACTTGTGTTGAACAGAGCCCATGAGTAAGCAGCAGCACCAGCTCTAAAACCACATCTGGCCTGCGTGACTTTGGCCCGTCTCTCTGTGTGTTGATGTCTGTATTGGAAGGTAGTCAAATTAGTGCTCCTTGATGCACTGTTGGATTTAAGACCTCATAAAATTGCACTATTACAGACAAAACTGTATAGAGTTTTGAATGTCGCTACAAAACATGTATGCACTGCACTGACTACCTCttattttagatttcttttaatGCTATAACAGGGATCCCAGTATCAGTCGGTTGTTAATTCGGAAATTAAGCACATTAAAGTTCAGAATATCtggaaatgtaatatttttggtgcatccttaatttttttaaagacatgaTTAACAGGAAGTTGATTTGGTTGTTTGCATGGATAGTCATAAAGTGTAATTAACTaataaagtctaaataaaacttGTAGAATAGATACTATAACTTatgaaaagttattttgtaataacattctatatattctataattTAAACAAGTTTATGTTGCTTCTTTACACAATGTGAACATATTATCAATTCATTTGTAAaggctgtttattttatttagtagaATGATATGATTGAATGCTTATTTAtggttatgtaaaaaaaaatcttatttcattaaattttatTCTTATAATATTGCTGTGGTTCAGTACGAAAAGCATGTTCGCGTTATTATGTGGGAAAAATGTCACAATACACGTTTTCCTTTTCAGTTCAGTGTATCATCTTTGACAAACTTGTGTTGCATttgtaaactgttttttatttaaaatcattgcttgtcaaaatctaaacaaataatTGTTAAGGTCTTATGGAGCCCCCTACTGgcgatttttaaaagaaaagacattttgaaaaaatattaaactgagTTTGAAAAGCTGAAA
>XM_043260914.1
TATTGGTAGCTGCTTTTCTAACAGGGAGGTTCCGCTGCACTTGATTAGATGAGGAGCATCTCGAAGCCGGTATGATGGAAGCAGAGCGAGAAAATACGAATGCATGAGATTTACAGTCCACCGTCGTTTGGAGGCACTTTCTAACTGTCGCAAAAATGAAGATTTGGAGCACCGAGCACATATTCAGCTACCCTTGGGAGACCGTGATCAAAGCGGCTATGAGGAAGTATCCTAATCCGATGAACCCTAGTGTCGTCGGGGTGGACGTTCTTGACAGGAACTTGGACACAAATGGACGTCTTCACAGTCATCGGCTGCTCAGCACGGAGTGGGGGCTTCCAGCAGTCGTCAGAGCGattttagggACAAATCGGACCGTCACATATGTAAAAGAGCATTCCATTGTGGacccagaagagaaaaaaatggagCTTTGCTCAACGAACATAACCCTAACTAATTTAATATCAGTTGATGAAAGGCTTGTCTACAGGCCCCATCCAGAAAATCCAGAGGTCACTGTATTAACCCAAGAGGCGATCATCACCGTGAAGGGGGTCAGTCTGAGCAGCTATCTTGAGGGACTGATGGCTCTAACCATGTCAGCTAATGCAAGAAAGAGCCCATGAGTAAGCAGCAGCACCAGCTCTAAAACCACATCTGGCCTGCGTGACTTTGGCCCGTCTCTCTGTGTGTTGATGTCTGTATTGGAAGGTAGTCAAATTAGTGCTCCTTGATGCACTGTTGGATTTAAGACCTCATAAAATTGCACTATTACAGACAAAACTGTATAGAGTTTTGAATGTCGCTACAAAACATGTATGCACTGCACTGACTACCTCttattttagatttcttttaatGCTATAACAGGGATCCCAGTATCAGTCGGTTGTTAATTCGGAAATTAAGCACATTAAAGTTCAGAATATCtggaaatgtaatatttttggtgcatccttaatttttttaaagacatgaTTAACAGGAAGTTGATTTGGTTGTTTGCATGGATAGTCATAAAGTGTAATTAACTaataaagtctaaataaaacttGTAGAATAGATACTATAACTTatgaaaagttattttgtaataacattctatatattctataattTAAACAAGTTTATGTTGCTTCTTTACACAATGTGAACATATTATCAATTCATTTGTAAaggctgtttattttatttagtagaATGATATGATTGAATGCTTATTTAtggttatgtaaaaaaaaatcttatttcattaaattttatTCTTATAATATTGCTGTGGTTCAGTACGAAAAGCATGTTCGCGTTATTATGTGGGAAAAATGTCACAATACACGTTTTCCTTTTCAGTTCAGTGTATCATCTTTGACAAACTTGTGTTGCATttgtaaactgttttttatttaaaatcattgcttgtcaaaatctaaacaaataatTGTTAAGGTCTTATGGAGCCCCCTACTGgcgatttttaaaagaaaagacattttgaaaaaatattaaactgagTTTGAAAAGCTGAAA

Function

symbol description
prelid3a Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Predicted to be active in mitochondrial intermembrane space. Orthologous to human PRELID3A (PRELI domain containing 3A).

NR:

description
PREDICTED: protein slowmo homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260913.1 True 1606 mRNA 0.38 7 15959669 15963708
XM_043260914.1 False 1530 mRNA 0.38 6 15959669 15963708

Neighbor

gene id symbol gene type direction distance location
lratd2b zgc:110182,LOC107715046,LOC107699471,LOC107723393,LOC107593723,LOC107595500,LOC107657619 coding downstream 20779 15936647 ~ 15938890 (-)
prss1 try,LOC107714673,LOC107699515,LOC107595397,LOC107657672,LOC107723506,LOC107593633 coding downstream 90458 15867304 ~ 15869211 (-)
has1 has1,LOC107714739,LOC107723422,LOC107657615,LOC107699477 coding downstream 154967 15799086 ~ 15804702 (-)
si:dkey-79d12.5 si:dkey-79d12.5,LOC107714671,LOC107595341,LOC107699478,LOC107657668,LOC107723514,LOC107570843 coding downstream 200002 15754181 ~ 15759667 (-)
kcnn4 kcnn4,LOC107595330,LOC107714738,LOC107699521,LOC107723512,LOC107570842,LOC107657667 coding downstream 205759 15735273 ~ 15753910 (-)
rbfa LOC107699468,LOC107715083,LOC107596252 coding upstream 34604 15998312 ~ 16000648 (-)
LOC122360718 jarid2a,LOC107714830,LOC107595576,LOC107699452,LOC107593646,LOC107657689,LOC107723487 coding upstream 106831 16070539 ~ 16103655 (-)
LOC122361095 LOC107596551,LOC107699467,LOC107715090,LOC107657620,LOC107578647 coding upstream 185255 16148963 ~ 16152079 (-)
LOC122361096 zgc:136493,LOC107699466,LOC107714862,LOC107596560 coding upstream 188796 16152504 ~ 16154388 (-)
dtnbp1a LOC107723533,LOC107657692,LOC107714847,LOC107593648 coding upstream 234011 16197719 ~ 16210633 (-)
G113234 NA non-coding downstream 1005 15929222 ~ 15958664 (-)
G113236 klhl38b,LOC107723565,LOC107657680,LOC107593636 non-coding downstream 12986 15911312 ~ 15946683 (-)
G113231 LOC107714685,LOC107699511,LOC107657677,LOC107723481 non-coding downstream 50996 15907099 ~ 15908673 (-)
G113232 NA non-coding downstream 52839 15906233 ~ 15906830 (-)
G113187 NA non-coding downstream 195924 15763469 ~ 15763745 (-)
G113244 LOC107715075,LOC107699469,LOC107595516,LOC107723556,LOC107593640,LOC107657683 non-coding upstream 1050 15964758 ~ 15967193 (-)
LOC122360541 NA non-coding upstream 21033 15984741 ~ 15986184 (-)
LOC122361072 LOC107723533,LOC107657692 non-coding upstream 102458 16066166 ~ 16067545 (-)
G113281 NA non-coding upstream 156618 16120326 ~ 16196677 (-)
G113300 NA non-coding upstream 227154 16190862 ~ 16192689 (-)
G113220 LOC107714743,LOC107699517,LOC107595378,LOC107657670,LOC107593630,LOC107723558 other downstream 97776 15857599 ~ 15861893 (-)
G113203 fpr1,LOC107714672,LOC107699476,LOC107593626,LOC107657616,LOC107595349,LOC107723415,LOC108429924,LOC108265369 other downstream 140583 15816979 ~ 15819086 (-)
fxyd6l si:dkey-56f14.4,fxyd6l,LOC107570838,LOC107657592,LOC107723383,LOC107570836,LOC107714713,LOC107699456,LOC107657664,LOC107723441 other downstream 287518 15659752 ~ 15672151 (-)
rps19 rps19,LOC107657656,LOC103354132,LOC100689943 other downstream 463256 15468480 ~ 15496413 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other downstream 584365 15365188 ~ 15375304 (-)
adnp2a LOC107714821,LOC107699502,LOC107723537,LOC107595567,LOC107657688 other upstream 37605 16001313 ~ 16006471 (-)
G113275 zgc:136493,LOC107699466,LOC107714862,LOC107596560 other upstream 49256 16012964 ~ 16013751 (-)
G113267 LOC107699468,LOC107715083,LOC107596252 other upstream 175611 16139319 ~ 16141235 (-)
atxn1b atxn1b,LOC107699498,LOC107595586,LOC107723489,LOC107593649,LOC107657690,LOC107736225 other upstream 254953 16218661 ~ 16228466 (-)
fam8a1b fam8a1,fam8a1b,LOC107715098,LOC107593650,LOC107595671,LOC107723574,LOC107657622 other upstream 269264 16232972 ~ 16239506 (-)

Expression


Co-expression Network