LOC122360378 (rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129)


Basic Information

Item Value
gene id LOC122360378
gene name rpz4,LOC107688231,LOC107592460,LOC107756901,LOC107671422,LOC107726665,LOC107592129
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 27685267 ~ 27690120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260929.1
TTGGTAATGGGTAAATTCCTTCAGAGTGTAGTTGAAGGGTGTGCCACGCGCTTTAGAGAAGAACCAGCGCGTGATCAGACGCTGCGCGAGACAGATCAGCGCCAactttacctttattttattcacagctATTTGTGATCGATTGGAAGcAAGCCCACCCTGACTCGCACTGACCATTTAGAAGTTGAGGGGAAACAAGGACTAATACATatacattttttgcttttgaaactgAAAGATGGCCGATCAGCTGCAGAAActtgtttcacagaagaaggATGTCGTCGAGACCGTCATGGAAGTGTTTGAGCAGGACGCAGAAGTGGTGGCCAGCATCGCTGGAGATCTGTTCCCCGTGTTCTCCATCGCAGCTCCGATCGTGAAGCTGGCGCTGGATAACGTGGAAAGCAAAGAGGCCGAGTACATGAAGGAGCAGTTCCAGAAAGTGCGAGATCGCCTGGAAGTCGTTTCTGAAGAAGTCCAGCAGATAAACCAGGAGATCAAGAAGAGCGGCATAGATGCAACCTACTTCTCCGTGGAGGAGAACCTGACCAACCAATTCCGCAAATTCATGGACGTCCTGAACGCCAAACCTAAATTCAGAGAAGTCCGCAAGAAAACTTTCCTGGACCACTTCAACAGGACAGGGGGTGATAAAAACCTGCACACACTTTATAACGCCGTAACTGGAGATAACTTCTCAGGAGAGTCTGTGCTGGAAATCACTCTGAATTACGAGCAGAAGAGCCGCAGAATGGTGGAGGATTTTTGCGCTACGCTCAAGAAACTGTTCTGCATCGGTTTGATCGCCTTACTGGGACAAGCAGCATTGAAAGGCGATGACGAGGAGGAGAAGCTGCTTCAAGATTGGAGCGAAAGGATGAAAGTGGTGCAGGATAAAATGAACGTCGTGATTGAAGACTGCATCAACAGCTTTCCGACGCAGGCCGAGCTGGACACCAAACGCATAGTGAGAGACCAAAGCGACAAAAGCAACCAGCAACTGGCCGACTTGCTGGTAGAGCACCTGAAAAAGAAGTACGACTGGGTTTGCTGGTCAGTCCGCGTCTTTAACTCCCCCACCGGCCTGTTCACCAACAAGAAAGACTTCCACGGTTTGACGGGAAAGAGTCGCTTTCAGGTGCCATCGTCAGATGACAAGCTAAACGTTGTGGTCTCCTACAGCGCCTCGCCTGAACCCATCGATAAAGCCCGGATACAGAGCCTGATTTCAGAGCAGAAGAAGGTGACGATGACGCCGTTGGCTGAACTGCTTTTTGAGACTATCCCTGTTAGTGTGGTTCACACAATCAAGACCTCATGCAAAGATCTGGGCTTCTCCAGCAGCTTCTCTGAAGAGCTGCACTTCTTTGAGGAGTTCAAGAGCTTCTGTGTCTTTCTTCATTCTGCTTAAATGAAGAGGAGAAGGTAAAGATTGAGCAGATGTTGTAGAATGATATTCAATTCGACAATTATATTTAGACAACTTAGTCCCTGACTTGTGACCAAAATATTGTTCtctccattttttcttttttcatcttttatacTTAGTATTTCCTTTATCTCTGCTTGTTTTAAAGCTGCAAATGAACACTTTAATATATcgaatttgtatttgtaatataaaaagtgtttagTTCTCTCTTATTAGTGCATTTGGGGGGTGATGGTAGGGATTTTAAGATTAGGCTGGTAAAAATGTAGTCTCGTTGGCACTGATATGGTATGATGTGGGTAGCGCTGACATACAGCACCATTGTGCTTTGGG
>XM_043260930.1
ACGCGGCGATTTCGTTGCTCTGCGCGCTGTAGTTTCAGTTTTTGCTCACGAAAAGTTTTGGGCGTTTCTCTTCACAGCGCTGGGTCTGTCCGCCTGTGACATTTTCTCCAGACGTCGATGTGTTTTAAACACGAcAAGCCCACCCTGACTCGCACTGACCATTTAGAAGTTGAGGGGAAACAAGGACTAATACATatacattttttgcttttgaaactgAAAGATGGCCGATCAGCTGCAGAAActtgtttcacagaagaaggATGTCGTCGAGACCGTCATGGAAGTGTTTGAGCAGGACGCAGAAGTGGTGGCCAGCATCGCTGGAGATCTGTTCCCCGTGTTCTCCATCGCAGCTCCGATCGTGAAGCTGGCGCTGGATAACGTGGAAAGCAAAGAGGCCGAGTACATGAAGGAGCAGTTCCAGAAAGTGCGAGATCGCCTGGAAGTCGTTTCTGAAGAAGTCCAGCAGATAAACCAGGAGATCAAGAAGAGCGGCATAGATGCAACCTACTTCTCCGTGGAGGAGAACCTGACCAACCAATTCCGCAAATTCATGGACGTCCTGAACGCCAAACCTAAATTCAGAGAAGTCCGCAAGAAAACTTTCCTGGACCACTTCAACAGGACAGGGGGTGATAAAAACCTGCACACACTTTATAACGCCGTAACTGGAGATAACTTCTCAGGAGAGTCTGTGCTGGAAATCACTCTGAATTACGAGCAGAAGAGCCGCAGAATGGTGGAGGATTTTTGCGCTACGCTCAAGAAACTGTTCTGCATCGGTTTGATCGCCTTACTGGGACAAGCAGCATTGAAAGGCGATGACGAGGAGGAGAAGCTGCTTCAAGATTGGAGCGAAAGGATGAAAGTGGTGCAGGATAAAATGAACGTCGTGATTGAAGACTGCATCAACAGCTTTCCGACGCAGGCCGAGCTGGACACCAAACGCATAGTGAGAGACCAAAGCGACAAAAGCAACCAGCAACTGGCCGACTTGCTGGTAGAGCACCTGAAAAAGAAGTACGACTGGGTTTGCTGGTCAGTCCGCGTCTTTAACTCCCCCACCGGCCTGTTCACCAACAAGAAAGACTTCCACGGTTTGACGGGAAAGAGTCGCTTTCAGGTGCCATCGTCAGATGACAAGCTAAACGTTGTGGTCTCCTACAGCGCCTCGCCTGAACCCATCGATAAAGCCCGGATACAGAGCCTGATTTCAGAGCAGAAGAAGGTGACGATGACGCCGTTGGCTGAACTGCTTTTTGAGACTATCCCTGTTAGTGTGGTTCACACAATCAAGACCTCATGCAAAGATCTGGGCTTCTCCAGCAGCTTCTCTGAAGAGCTGCACTTCTTTGAGGAGTTCAAGAGCTTCTGTGTCTTTCTTCATTCTGCTTAAATGAAGAGGAGAAGGTAAAGATTGAGCAGATGTTGTAGAATGATATTCAATTCGACAATTATATTTAGACAACTTAGTCCCTGACTTGTGACCAAAATATTGTTCtctccattttttcttttttcatcttttatacTTAGTATTTCCTTTATCTCTGCTTGTTTTAAAGCTGCAAATGAACACTTTAATATATcgaatttgtatttgtaatataaaaagtgtttagTTCTCTCTTATTAGTGCATTTGGGGGGTGATGGTAGGGATTTTAAGATTAGGCTGGTAAAAATGTAGTCTCGTTGGCACTGATATGGTATGATGTGGGTAGCGCTGACATACAGCACCATTGTGCTTTGGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107688231 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260929.1 True 1771 mRNA 0.46 3 27685267 27690120
XM_043260930.1 False 1756 mRNA 0.46 3 27685267 27689924

Neighbor

gene id symbol gene type direction distance location
LOC122360733 ubqln4,LOC107756885,LOC107726678 coding downstream 47736 27631766 ~ 27637531 (-)
LOC122359999 lamtor2,LOC107688283,LOC107592476 coding downstream 54993 27628557 ~ 27630274 (-)
LOC122360683 rab11al,rab25,LOC107688222,LOC107756900,LOC107671462,LOC107726679,LOC107592127 coding downstream 63636 27613773 ~ 27621631 (-)
LOC122360076 slc6a20,LOC106605517,LOC106579373 coding downstream 126295 27538393 ~ 27558972 (-)
si:ch211-269k10.4 NA coding downstream 303478 27375901 ~ 27381789 (-)
LOC122360376 rpz5,LOC107728472,LOC107688231,LOC107592460,LOC107726664,LOC107671422,LOC107592128 coding upstream 320 27690440 ~ 27693938 (-)
tmem176l.4 NA coding upstream 206608 27896728 ~ 27900760 (-)
mex3a mex3a,LOC107592477,LOC107688221,LOC107592188,LOC107756899,LOC106605309 coding upstream 242954 27933074 ~ 27939751 (-)
zmp:0000000881 LOC107756898,LOC107688220,LOC107592478,LOC107726696,LOC107671483,LOC107592126 coding upstream 276322 27966442 ~ 27971009 (-)
LOC122360891 thsd7a,LOC107671443,LOC107688266,LOC107756884,LOC107726647,LOC107592524 coding upstream 400765 28090885 ~ 28127371 (-)
G116833 NA non-coding downstream 8008 27675988 ~ 27677259 (-)
G116814 NA non-coding downstream 72767 27612068 ~ 27612500 (-)
G116812 NA non-coding downstream 76302 27608212 ~ 27608965 (-)
LOC122360078 NA non-coding downstream 93241 27584654 ~ 27592026 (-)
G116733 NA non-coding downstream 195588 27378560 ~ 27489679 (-)
G116834 rpz3,LOC107688230,LOC107592462,LOC107671478,LOC107592463,LOC107728473 non-coding upstream 11006 27701126 ~ 27704934 (-)
G116835 NA non-coding upstream 16486 27706606 ~ 27707458 (-)
G116865 NA non-coding upstream 262448 27952568 ~ 27954707 (-)
G116867 NA non-coding upstream 270511 27960631 ~ 27961680 (-)
LOC122359885 rab25b,LOC107756889,LOC107592474,LOC107688282,LOC107671436,LOC107592134 other downstream 57607 27622629 ~ 27627660 (-)
LOC122360079 NA other downstream 105401 27520190 ~ 27579866 (-)
G116745 plekhg4b,LOC107569053,LOC107659069,LOC107601962,LOC108426379,LOC107729806 other downstream 324438 27358707 ~ 27360829 (-)
LOC122360878 NA other downstream 686908 26993974 ~ 26998359 (-)
G116677 NA other downstream 729433 26954220 ~ 26955834 (-)
G116836 rpz,LOC107688232,LOC107592467,LOC107728474,LOC107726667,LOC107671398 other upstream 17596 27707716 ~ 27804770 (-)
G116868 NA other upstream 273368 27963488 ~ 27964958 (-)

Expression


Co-expression Network