usp45 (usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836)



Basic Information


Item Value
gene id usp45
gene name usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23582993 ~ 23609841 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043260939.1
gttaaaaaacaaaaccccaCAGCACTAGTAAAACAGCTCTTTTTCAATAACAGTAGATATACAAACGAGTTTGGCCATACAAGTATCCGTAGTGCGTCGATGAGGATGAGGCCACGTGACACATGTGATACTTGTGCTTTCTGTTCTTCTCCAAATGCCACCAAATACGCGGACAAACTCTGTTCACCAGAATATTACCTGCGTCTCGGGATTACACGATTTCCGATTGTCGAAGTGTTAGATCCGAACGCCAAAACTACAGTCTGAAATTATTCCGTATTTATAAACTTGGAAGCATATGTAAGTTATCATCTTCGCTCTTCCACCTGGCCACTTGACAACTGACGTTCGCTTTGGTAGTGAGCCTGGAGAGGAGGGGACCATAAACAGGATACAAATGCGGCTGAAAGACCCCTTCTCTTTAAAAACCGCAGACATGACAAAGCGGTCTAACAAGCCAAAGAAGCCTCGCGATGAAGACTCATCCGACGAGGTTGGCGGGTTGACATGCCAGCATGTGAGCAGGGCTGTGGACCTCAGCTCAGTGAAGAAGGCAGTGACGGGCAGTCTGTGGTCGGTGTGCTCCGATTGCCTCAAAGAGAGGAACATGCATGAGGGAGAACCAGCAGGAGCACATGACATCCTTATGTGCCTCAAGTGTGGGTTCCAGGGTTGTAACCAGGCTGAAACTCAGCATTCCACAAAACACCAGCAAGCTCATCACTCTGACTCTCACTGTATAACCATCAGCCTCAGTACATGGAAAGCATGGTGTTTTGAATGTAAGGAAGAGCTCTCCACACACTGTAATAAGAAAGCGCTGGCTCAGACTCTGGATTTCCTGCAAAAGCACTCAGCAAAGGCCACCTCAGgAACAAGCTCAAAAATTATCAGACTCAGAGAGGAACCCACTGAGTATGTGGACACTCAGAGAGGGAAGACTCCAGTGAATAGCACACTTATCCCAGTCAAGGGCATCAACAACCTGGGTAACACCTGCTTCTTCAATGCTGTGATGCAGAATCTCTCCCAGACCCACATGCTGAATGACCTGATTCAAGATGTCAAGGAGAAGGGACATAAAATGAAGATTTGCCCCTCTGCTGAGACTAACTTGGGGCCATTAACGGTGACGTTGCCCAGCCCAGAACCCCTCACCTCAGCCATGTTCCTTTTCCTACAAAGCATGAAGGAACCTGGGAAAGGGCCTGTCTCCCCCAAGATCCTTTTCAACCAGCTCTGCCAGAAGGCCCCTCGCTTCAAGGGTTACCAGCAACAGGACAGTCAGGAATTGCTGCATTACCTCCTGGACTCCATGAGGGTGGAGGAGACAAAGCGCATTAAAGCAGGCATCCTCAAAGCCTTTAACAACCCCACGGAAAAGACAGCTGACGAGGAGACCAAACGACAAGTGAAGGCTTATGGGAAGGAAGGAGTGAAAATGAATTTTGTCGATCGCATTTTTGTTGGAGAGCTGACCAGCACCATAATGTGTGAAGAATGTGAACATATTTCAACAGTGAAGGAAGCCTTCATTGACATTTCCCTTCCTATCATAGAGGAAAGAATCTCGAAGCCTACGAACCCTGGTAGACTAGTGAAAAGTGGGCGGGAGCAAGATGGTCCGGCTTCCCATGATGACTTATCAGCTGGCCAATCACAAACCAATAGAAACAGCAGGAGGTTGAGTGGACAGAAGCTGCAGGGTCGCCATTCGTCCGCTTCTCATGATGACAGAGGCGCAGATTCAGTTTCTAGCCGACAAGAGGAGGAGCTCTGTGTGGCTGGACGTGGCCTGGCCAGTTGCCGCGCAGATACGATGGGCAGCCAATCAGACTGCAGCGAGAAGGATTCCAACCTGCAGGACAGCAGTAACGATGCGGACAGCGAGGCCTCCGAGAGCGAATGGTCACCACGAATCCCATCTGTGTCCACTCATAGCAGCGCATCGGATAGAGCTTCGACCACCACGACCTTAGCCTCAACAGCACACAATCCAAGTCTAAAACCAAACCTGAGCCCGAGTCCCTCTTCTTTAGTCTCCATTAGACCTCAGCAGGGCGGCGCTGTAGAGCAGCTCGTCAGTGCTGTGTCCAAGCTAGGCCTGGTGCACACTTCCACTGACACTCTACCTGTCAGTCACAGCCCAGAGGAACCGTCCGAGGTCCGGGAGAGAGACCGTCAGCACCATCAAGGGGCATTCCAAGCCCTCTGTCACAGTTACACCCCCAGCTCTAAAGAGTGCTCCGTACAGTCCTGCCTGCATCAATTCACCTCTGTTGAGCTGCTGATGGGCAACAACAAACTGCTCTGTGAGAACTGCACTGAAAGAAGGCAAAGACAGATGAAGAGGAGCGataaGAAGGCTGAGAAGGTGTACACCAGTGCCCGTAAACAGATGCTCATCTCAGCACTTCCTCCAGTGGTTACTCTTCACCTTAAACGATTTCACCAGGCTGGGATGAATCTGAGGAAAGTTAATAGACATGTGGACTTTCCTCTTTTGCTAGACCTGGCACCTTTCTGCTCAGCCACTTGTAAGAATCTCGGGTTAGGAGAGCGTGTGTTGTACAGCTTGTATGGCATTGTGGAGCACAGTGGATCAATGCGAGGTGGGCACTACGCGGCCTACGTGAAGGTCCGCACCCCCCAGCGTAAACCTGAGCAGCGCTGGAACCAGTCAGGTTCCAGAGAGGCCAGCTCAGCCCCACAAGGTCAGTGGGTGTATGTCAGCGACACCAACGTTCAGACTGTACCGGAGTCCAGAGTGCTGAACTCTCAAGCTTATTTACTTTTCTACGAAGAACTCCTATAGATCCCGACGGACACGTGAATGAAAGATAATCCAGACGAATGCAAAATGCAATATCGGCAGCGAGCACTTACTGCATGACTATATCCCTGTATTTTAACGTAGGATCCCATATACTAAAAGCTCTGTCTTATGGCTCATTCATCACTCAAGGTGATCTGAATTAAAAATGGGAGCCATTTATTattgatgtaaaataatattacgagtttaagttatttaaattttacagctAATATTTCAGCTTaacattttttgggggggggtgtTCACTTTGCAGGAGAAATTGCCAAAGAGTAATTTAGGATAAATATGTATAGAATATATGATATGAGAGAGAGAATTGTGCCAAAAGAGTCTGTAACCTCTGTTGTGAAAGGGAAACTGCACAGTATGCAGCTGTTGCTTTGAGAGCCGTTTAAAACCTGTCCCATCCTGCACTGGATCACACAAACTAGTCGCATACGCACACATATGAACACGCAGACAACATGTCAGCATTTACTTGGAGACAGTTTAATATTCAGACAATTTGGAGAGAATTTCGTATAAGGTTTACTTgacaacaatataataaattgtaatttgctgattttcattcatttttgtgttaatacATTTAACTTTGGTTTGCTTGATCAGTactaatgtttttgaatgtagCTTGGTTCAAATGATAGAAATGGGCCCTCTCTGTAAAGTTTTAGGAATTTATAACCTGGATACACTTCTCGGTATCTAGTTATTAAGGAGTTAGTGCAATATTCCTGGACTTTGCCTCATGCCtaatttttctatttctgaaatgaatacgagtggaaaattattatttcttctcGTGTTTTTTGAAACGACATCAGTGCCTACGGTTTATGAGGGCTGAGATTGTTTTGCATGTCTTTAGCAAAGTATTCAATCCATACAGGAGTATAAAGAGAACGGTTTGTGTATATACTGATTAGAAATATACATAattgtatgtaaaatatgtatcttGTTCAATACTATTTATTCTGTTTACCGGGCAGATATTGTAACACCATAGATTTGTGTGGTGTATAAGGCTTCAGGGTTCCTCAGGCTGTTCTTTTGCTTGAATTTTGTGAACATAATCCagttataaatcatttaaaatgatcatttaaatacatttagttgaAGAAAA
>XR_006252802.1
CGCTTacgttaaaaaacaaaaccccaCAGCACTAGTAAAACAGCTCTTTTTCAATAACAGTAGATATACAAACGAGTTTGGCCATACAAGTATCCGTAGTGCGTCGATGAGGATGAGGCCACGTGACACATGTGATACTTGTGCTTTCTGTTCTTCTCCAAATGCCACCAAATACGCGGACAAACTCTGTTCACCAGAATATTACCTGCGTCTCGGGATTACACGATTTCCGATTGTCGAAGTGTTAGATCCGAACGCCAAAACTACAGTCTGAAATTATTCCGTATTTATAAACTTGGAAGCATATGTAAGTTATCATCTTCGCTCTTCCACCTGGCCACTTGACAACTGACGTTCGCTTTGGTAGTGAGCCTGGAGAGGAGGGGACCATAAACAGGATACAAATGCGGCTGAAAGACCCCTTCTCTTTAAAAACCGCAGACATGACAAAGCGGTCTAACAAGCCAAAGAAGCCTCGCGATGAAGACTCATCCGACGAGGTTGGCGGGTTGACATGCCAGCATGTGAGCAGGGCTGTGGACCTCAGCTCAGTGAAGAAGGCAGTGACGGGCAGTCTGTGGTCGGTGTGCTCCGATTGCCTCAAAGAGAGGAACATGCATGAGGGAGAACCAGCAGGAGCACATGACATCCTTATGTGCCTCAAGTGTGGGTTCCAGGGTTGTAACCAGGCTGAAACTCAGCATTCCACAAAACACCAGCAAGCTCATCACTCTGACTCTCACTGTATAACCATCAGCCTCAGTACATGGAAAGCATGGTGTTTTGAATGTAAGGAAGAGCTCTCCACACACTGTAATAAGAAAGCGCTGGCTCAGACTCTGGATTTCCTGCAAAAGCACTCAGCAAAGGCCACCTCAGgAACAAGCTCAAAAATTATCAGACTCAGAGAGGAACCCACTGAGTATGTGGACACTCAGAGAGGGAAGACTCCAGTGAATAGCACACTTATCCCAGTCAAGGGCATCAACAACCTGGGTAACACCTGCTTCTTCAATGCTGTGATGCAGAATCTCTCCCAGACCCACATGCTGAATGACCTGATTCAAGATGTCAAGGAGAAGGGACATAAAATGAAGATTTGCCCCTCTGCTGAGACTAACTTGGGGCCATTAACGGTGACGTTGCCCAGCCCAGAACCCCTCACCTCAGCCATGTTCCTTTTCCTACAAAGCATGAAGGAACCTGGGAAAGGGCCTGTCTCCCCCAAGATCCTTTTCAACCAGCTCTGCCAGAAGTATGTCTACCCTGCTGCCAtgtGGCCCCTCGCTTCAAGGGTTACCAGCAACAGGACAGTCAGGAATTGCTGCATTACCTCCTGGACTCCATGAGGGTGGAGGAGACAAAGCGCATTAAAGCAGGCATCCTCAAAGCCTTTAACAACCCCACGGAAAAGACAGCTGACGAGGAGACCAAACGACAAGTGAAGGCTTATGGGAAGGAAGGAGTGAAAATGAATTTTGTCGATCGCATTTTTGTTGGAGA

Function


symbol description
usp45 Predicted to enable thiol-dependent deubiquitinase. Involved in neural retina development and photoreceptor cell maintenance. Located in photoreceptor inner segment. Human ortholog(s) of this gene implicated in Leber congenital amaurosis. Orthologous to human USP45 (ubiquitin specific peptidase 45).

NR:

description
ubiquitin carboxyl-terminal hydrolase 45-like

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043260939.1 True 3977 mRNA 0.46 18 23582993 23609834
XR_006252802.1 False 1503 transcript 0.48 11 23588185 23609841

Neighbor


gene id symbol gene type direction distance location
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding downstream 3112 23572971 ~ 23579881 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding downstream 10676 23567058 ~ 23572317 (-)
faxcb faxcb,LOC107587769,LOC107700756,LOC107711729,LOC107704942,LOC107716849,LOC107552822 coding downstream 16149 23556775 ~ 23566844 (-)
fbxl4 fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759 coding downstream 46171 23527088 ~ 23536822 (-)
mms22l mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675 coding downstream 179363 23389423 ~ 23403630 (-)
me1 me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032 coding upstream 67149 23676990 ~ 23736637 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding upstream 142495 23752336 ~ 23787702 (-)
dop1a LOC107587763,LOC107704948,LOC107597122,LOC107700746,LOC107716858 coding upstream 179265 23789106 ~ 23811675 (-)
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding upstream 202110 23811951 ~ 23815789 (-)
utp11 utp11,utp11l coding upstream 474646 24084487 ~ 24087339 (-)
G115669 NA non-coding downstream 255100 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 393343 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 415053 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 505123 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 509543 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 206056 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 207059 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 210678 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 434919 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 467790 24077631 ~ 24077867 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 58611 23519808 ~ 23524382 (-)
G115554 NA other downstream 649026 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 681806 22892102 ~ 22901187 (-)
eny2 eny2,LOC107600664,LOC107551183,LOC105908906 other downstream 1493901 22087641 ~ 22089092 (-)
G115207 gpd1l,LOC107705153,LOC107713825,LOC107551192,LOC107666803,LOC107600618,LOC108434205 other downstream 1614458 21964855 ~ 21968535 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other upstream 58224 23668065 ~ 23675345 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 707641 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 754799 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 804385 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 2054878 25664719 ~ 25710686 (-)

Expression



Co-expression Network