me1 (me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032)


Basic Information

Item Value
gene id me1
gene name me1,LOC107704946,LOC107700750,LOC107587764,LOC107716854,LOC106583951,LOC106605032
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 23676990 ~ 23736637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260941.1
CGCTATTTAAAGGGGAAGCAACATGGCACACGCTTTAGTCAAACAGGAATCTGTCGAGTGGGAGATGCAGAAGTCAGCAGACCAAAGCAAGACCTTTGTTTACACGAAGAAGAGGGGGTATGATGTTACACGCAACCCCCActtaaataagGGGATGGCCTTCTCCCTGGAGGAGCGCTTGCAGCTTGGCATTCATGGCTTATTGCCTCCTTGCTTCCTCAGCCAGGATGTGCAGGTATTGCGGGTCCTCAGAAACTACGAGTTAAAAAGGGATGACTTGGACAGATATGTCTTTCTGATGGGCCTTCAGGACCGTAATGAGAAGCTGTTTTACCGAGTCTTGACCTCAGACATAGAGAGGTTCATGCCCATTGTGTACACACCTACAGTCGGCCTAGCGTGCCAGCAGTATGGCCTTACCTTCAGGAGACCTAGGGGCCTATTTATTACAATTCACGACCGCTCCCACATCTCCACACTACTTCAGAGCTGGCCAGAGAAGGACATTCGTGCCGTAGTGGTGACAGATGGGGAGAGGATTCTGGGCCTGGGGGATCTGGGCTGCTATGGCATGGGCATCCCTGTGGGTAAACTGGCCCTCTACACCGCCTGTGCTGGAATGCCGCCTCAGCAGTGCCTTCCTGTTATGCTGGACGTAGGGACAGACAATGAGGAACTTCTAAAGGACCCTCTGTACATTGGTCTGAGACATAAAAGAATACGTGGACAGGCCTATGATGAGCTTCTGGATGAATTCATGAAGGCTATCACAGACAGGTATGGGGTGAACTGCCTTATCCAGTTTGAGGATTTTGCCAACATCAACGCTTTTCGTCTGTTGAGCAAGTACCGCAACAAGTACCTCACATTCAATGACGACATTCAAGGTACTGCTGCTGTGGCTGTGGCAGGACTGCTGGCTGCCCTTCGCATTACCAAGAGCAAAATGAGCAACCATATCGTTGTATTTCAGGGTGCAGGGGAGGCTGCAATGGGCATAGCTGAGCTCATCATTATGGCGATGGAGAAGGAAGGACTTCCTCGTGAGCAGTGTATAAAGAAAATCTGGATGGTGGACTCAAAAGGACTTATTGTTAAGGGTCGGGATCACCTCACCCATGAGAAAGAGAGGTTTGCACATGAGCACGCTCAAATGAAGAAGCTTGAAGATGTTGTGAAGGAGCTTAAACCCACTGCTATAATcgGGGTGGCAGCTATCGCTGGCGCTTTCACAGAGGAGATAATCAAGACTATGGCATCCTTCAATAAGAGGCCTATTATCTTCGCTCTAAGCAACCCCACCAGCAAGGCAGAGTGTACTGCTGAACAGTGCTACACACTCACTGAGGGACGGGGGATATTTGCAAGCGGGAGTCCTTTTGATCCAGTAACCCTTCCAGATGGGCGAAAGTTCTACCCTGGTCAGGGCAACAACGCTTACGTGTTCCCCGGAGTGGGGCTGGGGGTCACCGCTTGTGCAGTGAGACACATCCCTGAGGATATTTTCCTCGTTACGGCCGAGGTGATAGCAGAACTAGTGACCGAGAAGGATCTTGCAGAGGGACGTCTGTATCCTCCTCTCAGCAGCATCCGGGAAGTGTCCATCAAGTTGGCTGTGAAGATTGTGGAGTATGCCTACAAAATCAAAATGGCAACGCTGTACCCGGAGCCCCACGATAAAGAGGCTCTTGTTCGTTCGCTCATCTACAGCACAGACTATGAAGAGTTTGCTGTGGATTCATACAGCTGGCCCGAGAACGCCATGATCGTCCAAACATGTAAACTGTGAGCTCCCAAAATGAGATTTATATGGCAAttctcttttaaatgtaatttcttaaCATGATTACAACACTACTGTAAACCTCTCCTCAATAAAATGTCTTAGTAGA
>XM_043260942.1
GCAACATGGCACACGCTTTAGTCAAACAGGAATCTGTCGAGTGGGAGATGCAGAAGTCAGCAGACCAAAGCAAGACCTTTGTTTACACGAAGAAGAGGGGGTATGATGTTACACGCAACCCCCActtaaataagATATGTCTTTCTGATGGGCCTTCAGGACCGTAATGAGAAGCTGTTTTACCGAGTCTTGACCTCAGACATAGAGAGGTTCATGCCCATTGTGTACACACCTACAGTCGGCCTAGCGTGCCAGCAGTATGGCCTTACCTTCAGGAGACCTAGGGGCCTATTTATTACAATTCACGACCGCTCCCACATCTCCACACTACTTCAGAGCTGGCCAGAGAAGGACATTCGTGCCGTAGTGGTGACAGATGGGGAGAGGATTCTGGGCCTGGGGGATCTGGGCTGCTATGGCATGGGCATCCCTGTGGGTAAACTGGCCCTCTACACCGCCTGTGCTGGAATGCCGCCTCAGCAGTGCCTTCCTGTTATGCTGGACGTAGGGACAGACAATGAGGAACTTCTAAAGGACCCTCTGTACATTGGTCTGAGACATAAAAGAATACGTGGACAGGCCTATGATGAGCTTCTGGATGAATTCATGAAGGCTATCACAGACAGGTATGGGGTGAACTGCCTTATCCAGTTTGAGGATTTTGCCAACATCAACGCTTTTCGTCTGTTGAGCAAGTACCGCAACAAGTACCTCACATTCAATGACGACATTCAAGGTACTGCTGCTGTGGCTGTGGCAGGACTGCTGGCTGCCCTTCGCATTACCAAGAGCAAAATGAGCAACCATATCGTTGTATTTCAGGGTGCAGGGGAGGCTGCAATGGGCATAGCTGAGCTCATCATTATGGCGATGGAGAAGGAAGGACTTCCTCGTGAGCAGTGTATAAAGAAAATCTGGATGGTGGACTCAAAAGGACTTATTGTTAAGGGTCGGGATCACCTCACCCATGAGAAAGAGAGGTTTGCACATGAGCACGCTCAAATGAAGAAGCTTGAAGATGTTGTGAAGGAGCTTAAACCCACTGCTATAATcgGGGTGGCAGCTATCGCTGGCGCTTTCACAGAGGAGATAATCAAGACTATGGCATCCTTCAATAAGAGGCCTATTATCTTCGCTCTAAGCAACCCCACCAGCAAGGCAGAGTGTACTGCTGAACAGTGCTACACACTCACTGAGGGACGGGGGATATTTGCAAGCGGGAGTCCTTTTGATCCAGTAACCCTTCCAGATGGGCGAAAGTTCTACCCTGGTCAGGGCAACAACGCTTACGTGTTCCCCGGAGTGGGGCTGGGGGTCACCGCTTGTGCAGTGAGACACATCCCTGAGGATATTTTCCTCGTTACGGCCGAGGTGATAGCAGAACTAGTGACCGAGAAGGATCTTGCAGAGGGACGTCTGTATCCTCCTCTCAGCAGCATCCGGGAAGTGTCCATCAAGTTGGCTGTGAAGATTGTGGAGTATGCCTACAAAATCAAAATGGCAACGCTGTACCCGGAGCCCCACGATAAAGAGGCTCTTGTTCGTTCGCTCATCTACAGCACAGACTATGAAGAGTTTGCTGTGGATTCATACAGCTGGCCCGAGAACGCCATGATCGTCCAAACATGTAAACTGTGAGCTCCCAAAATGAGATTTATATGGCAAttctcttttaaatgtaatttcttaaCATGATTACAACACTACTGTAAACCTCTCCTCAATAAAATGTCTTAGTAGA

Function

symbol description
me1 Predicted to enable malate dehydrogenase (decarboxylating) (NADP+) activity. Predicted to be involved in malate metabolic process and pyruvate metabolic process. Predicted to be active in mitochondrion. Orthologous to human ME1 (malic enzyme 1).

NR:

description
PREDICTED: NADP-dependent malic enzyme-like

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260941.1 True 1892 mRNA 0.49 14 23676990 23736637
XM_043260942.1 False 1741 mRNA 0.49 13 23676990 23736620

Neighbor

gene id symbol gene type direction distance location
pnisr pnisr,LOC107704944,LOC107716852,LOC107700755 coding downstream 97109 23572971 ~ 23579881 (-)
coq3 LOC107711746,LOC107700757,LOC107716851,LOC107552820 coding downstream 104673 23567058 ~ 23572317 (-)
faxcb faxcb,LOC107587769,LOC107700756,LOC107711729,LOC107704942,LOC107716849,LOC107552822 coding downstream 110146 23556775 ~ 23566844 (-)
fbxl4 fbxl4,LOC107587770,LOC107716847,LOC107704940,LOC107711744,LOC107552823,LOC107700759 coding downstream 140168 23527088 ~ 23536822 (-)
mms22l mms22l,LOC107716844,LOC107587771,LOC107711743,LOC107552829,LOC107700675 coding downstream 273360 23389423 ~ 23403630 (-)
snap91a snap91,LOC107704947,LOC107716855,LOC107700747,LOC107597123 coding upstream 15699 23752336 ~ 23787702 (-)
dop1a LOC107587763,LOC107704948,LOC107597122,LOC107700746,LOC107716858 coding upstream 52469 23789106 ~ 23811675 (-)
pnrc2 pnrc2,LOC107597121,LOC107700745,LOC107704949,LOC107716857,LOC107587761 coding upstream 75314 23811951 ~ 23815789 (-)
utp11 utp11,utp11l coding upstream 347850 24084487 ~ 24087339 (-)
rspo1 rspo1,LOC107756084,LOC107597137,LOC107587752,LOC107704954,LOC107700686 coding upstream 398246 24134883 ~ 24154422 (-)
G115669 NA non-coding downstream 349097 23326208 ~ 23327893 (-)
G115631 NA non-coding downstream 487340 23185050 ~ 23189650 (-)
G115621 NA non-coding downstream 509050 23165193 ~ 23167940 (-)
G115563 LOC101883708,LOC105900568,LOC106574835 non-coding downstream 599120 23074303 ~ 23077870 (-)
G115611 NA non-coding downstream 603540 23072259 ~ 23073450 (-)
G115910 NA non-coding upstream 79260 23815897 ~ 23816157 (-)
G115911 NA non-coding upstream 80263 23816900 ~ 23817100 (-)
G115914 cnr2,LOC107716825,LOC107704869,LOC107587892,LOC107700673,LOC107597120 non-coding upstream 83882 23820519 ~ 23822288 (-)
LOC122359981 NA non-coding upstream 308123 24044760 ~ 24057262 (-)
G115939 NA non-coding upstream 340994 24077631 ~ 24077867 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1645 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 67149 23582993 ~ 23609841 (-)
G115882 pou3f2,pou3f2b,LOC106584047,LOC106605033,LOC107711728,LOC107704941,LOC107700690 other downstream 152608 23519808 ~ 23524382 (-)
G115554 NA other downstream 743023 22932627 ~ 22933967 (-)
cdc42se1 cdc42se1,LOC107704996,LOC107705438,LOC107588480,LOC107700699,LOC107556109,LOC105018866 other downstream 775803 22892102 ~ 22901187 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other upstream 580845 24317482 ~ 24339788 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other upstream 628003 24364640 ~ 24369566 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other upstream 677589 24414226 ~ 24473365 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 1928082 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 2643035 26379672 ~ 26384187 (-)

Expression


Co-expression Network