nt5c3a (LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689)


Basic Information

Item Value
gene id nt5c3a
gene name LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1656548 ~ 1662627 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261003.1
GGCCTATATAAGTGTGTGTCAGacaagaaacattttcttctGTGTTTGATACAACGCCTGGAAGAGAAAAAGATGCCAGAGTTTGAGAAGAGCACAGTTCACATCAGAGACCCTGAGAGGGTGGAGCAAATAATTTGCAGTCTCATTAAAGGTGGAGCATCGAAACTGCAGATCATCACAGATTTTGATATGACGTTAAGCAAGTTTGCCGTCAACGGAAAACGCTGCCCAACATGTCAtaATATCATTGACAACTGCAAGCTGGTGACAGAAGAATGTAGGAAGAAGCTGCTTCAACTAAAGGAGACGTATTATCCAATAGAGATTGACCCACATCTGACCATGGAGGAGAAATATCCATTTATGGTGGAATGgtaTTTTAAGTCTCACACGTTATTGGTAGAACAGAGATTGCAGAAGGACAAACTTCCAGAAGTTGTGAGAGAGTCGGATGTCTGTCTCAGGGAAGGGTACGAGCAGTTCTTTGACCGGCTGCAGCAGCACAACGTTCCCATGTTCATCTTCTCCGCCGGTCTGGGAGATGTGCTTGAGGAAATTATCAGACAAGCTGGCGTATACCACACCAACGTCAAAGTCGTGTCCAACTTCATGGACTTTGATGATAATGGTGTTCTGAAAGGCTTCAAAGGAGAGCTGATCCATGTTTACAACAAGCATGACGGTGCCCTGAGGAACACGGAGTATTTCAAACAACTGAAGGACAATGGAAATGTTATTCTGCTGGGAGACTCTCTCGGTGATCTCACCATGGCAGATGGTGTGCCCAACGTAGAGAACATCCTCAAAGTCGGCTTTCTTAATGATAAGGTGGAGGAACGGTTAGAAAAGTACATGGACTCTTACGATATAGTTCTGGTGAGGGATGAAACACTTGAAGTGCCTAATTCCATACTACAGAAGATCTTATAATAGACACCGCAGAGCCACCGGCCCGCAGCACAGACTCAAATTCCAGGGTATTCGGAGTCACCTGGATAATTCCAGCACTGAGGCCAGCCTTCATCTGTCGACATGCCTCACATGTTCACAAGCCATCAATACTTCAcattttgacctttttaaaaTTTCGTCCTCTCACCATAATGAACTATTTTAGTCGACACATACACCTGGGATCTTGGTGTAAATGTATTATCAAAAGAGAAatgcatcatttgcatattGGTAAAATTATCGTTTGTAGTATTTTTGATATGGAAATATGTGTGTTCAGTGTCTGCAATAAGAGTTGGGACTGTGAACAGTACAAAGCCCAGCTGACATCGTCATTCTTAAAATGATGCGCACTTTTAAAGTCTGAAGAACTGTCAAAAGATCTCATGGAACTTTGTATTTCATGCGAGGATGCAGGCTGCATGCACAGATCAACAGTAAAGCAATACTGTAAATTGATCCAAAAGCCATGATGTTTCATGTATTGTGTGCTTTGTCCCGTGAGAATGTTTTAGCATAAACGATCAACCTTTCGGTGTTAACGTTTGCCTAACTTCCTGATTACCTGTGAGGTAggcaataaagttttttttttctctgcaa
>XM_043261004.1
GCATCATCCGGGTATTTTATGCATGCAGACAGTTCTAACAGCGGACATGATACGTACTACATAGCGCTGAAACGGATAGTGTGTAGGGCGGCTGTGTACCGTTCCGACACACCCCGTAAACGTAGTGTCTGCGCgacaaaatttgttttttaaccGGAGAGCGGACATGGACAGAAACGCTGTGGTTAAAGTCGGCGCGATGGCGAGCGCCACTATGTGCGCGCTGTTCGGCGGAGTCGTGTTCGCGCAGTACATTTTCACCAAGAAACAGAGAGCAGGAAAGAAAACCAAGATAATCGAAATGATGCCAGAGTTTGAGAAGAGCACAGTTCACATCAGAGACCCTGAGAGGGTGGAGCAAATAATTTGCAGTCTCATTAAAGGTGGAGCATCGAAACTGCAGATCATCACAGATTTTGATATGACGTTAAGCAAGTTTGCCGTCAACGGAAAACGCTGCCCAACATGTCAtaATATCATTGACAACTGCAAGCTGGTGACAGAAGAATGTAGGAAGAAGCTGCTTCAACTAAAGGAGACGTATTATCCAATAGAGATTGACCCACATCTGACCATGGAGGAGAAATATCCATTTATGGTGGAATGgtaTTTTAAGTCTCACACGTTATTGGTAGAACAGAGATTGCAGAAGGACAAACTTCCAGAAGTTGTGAGAGAGTCGGATGTCTGTCTCAGGGAAGGGTACGAGCAGTTCTTTGACCGGCTGCAGCAGCACAACGTTCCCATGTTCATCTTCTCCGCCGGTCTGGGAGATGTGCTTGAGGAAATTATCAGACAAGCTGGCGTATACCACACCAACGTCAAAGTCGTGTCCAACTTCATGGACTTTGATGATAATGGTGTTCTGAAAGGCTTCAAAGGAGAGCTGATCCATGTTTACAACAAGCATGACGGTGCCCTGAGGAACACGGAGTATTTCAAACAACTGAAGGACAATGGAAATGTTATTCTGCTGGGAGACTCTCTCGGTGATCTCACCATGGCAGATGGTGTGCCCAACGTAGAGAACATCCTCAAAGTCGGCTTTCTTAATGATAAGGTGGAGGAACGGTTAGAAAAGTACATGGACTCTTACGATATAGTTCTGGTGAGGGATGAAACACTTGAAGTGCCTAATTCCATACTACAGAAGATCTTATAATAGACACCGCAGAGCCACCGGCCCGCAGCACAGACTCAAATTCCAGGGTATTCGGAGTCACCTGGATAATTCCAGCACTGAGGCCAGCCTTCATCTGTCGACATGCCTCACATGTTCACAAGCCATCAATACTTCAcattttgacctttttaaaaTTTCGTCCTCTCACCATAATGAACTATTTTAGTCGACACATACACCTGGGATCTTGGTGTAAATGTATTATCAAAAGAGAAatgcatcatttgcatattGGTAAAATTATCGTTTGTAGTATTTTTGATATGGAAATATGTGTGTTCAGTGTCTGCAATAAGAGTTGGGACTGTGAACAGTACAAAGCCCAGCTGACATCGTCATTCTTAAAATGATGCGCACTTTTAAAGTCTGAAGAACTGTCAAAAGATCTCATGGAACTTTGTATTTCATGCGAGGATGCAGGCTGCATGCACAGATCAACAGTAAAGCAATACTGTAAATTGATCCAAAAGCCATGATGTTTCATGTATTGTGTGCTTTGTCCCGTGAGAATGTTTTAGCATAAACGATCAACCTTTCGGTGTTAACGTTTGCCTAACTTCCTGATTACCTGTGAGGTAggcaataaagttttttttttctctgcaa

Function

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 3A isoform X1

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K24242 NT5C3; cytosolic 5'-nucleotidase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261003.1 False 1557 mRNA 0.42 9 1656548 1659893
XM_043261004.1 True 1789 mRNA 0.44 9 1656548 1662627

Neighbor

gene id symbol gene type direction distance location
si:ch73-341k19.1 LOC107551746 coding downstream 2021 1648367 ~ 1654527 (-)
pmvk pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277 coding downstream 106617 1545287 ~ 1549931 (-)
LOC122359849 mbp,LOC107661001,LOC107551742,LOC107697274 coding downstream 146114 1496586 ~ 1510434 (-)
LOC122361052 foxo1b,LOC107686122,LOC107746988,LOC107588742,LOC107577289,LOC107691691 coding downstream 364235 1282311 ~ 1292313 (-)
LOC122361256 NA coding downstream 1361563 294867 ~ 294985 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding upstream 22277 1684904 ~ 1704721 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding upstream 55408 1718035 ~ 1720115 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding upstream 338154 2000781 ~ 2010666 (-)
LOC122360106 NA coding upstream 1037694 2700321 ~ 2700949 (-)
sim1a sim1a,sim1,LOC107697271,LOC107661021,LOC107551726 coding upstream 1236686 2899313 ~ 2915431 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding downstream 10399 1645614 ~ 1646149 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding downstream 12375 1643873 ~ 1644173 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding downstream 13505 1642630 ~ 1643043 (-)
G109440 NA non-coding downstream 15236 1640777 ~ 1641312 (-)
G109439 NA non-coding downstream 19551 1636416 ~ 1636997 (-)
G109460 NA non-coding upstream 73561 1736188 ~ 1997307 (-)
G109465 NA non-coding upstream 154635 1817262 ~ 2078943 (-)
G109466 NA non-coding upstream 164535 1827162 ~ 2085673 (-)
G109471 NA non-coding upstream 277502 1940129 ~ 1941153 (-)
G109481 NA non-coding upstream 556939 2219566 ~ 2225804 (-)
G109287 NA other downstream 773796 882459 ~ 882752 (-)
G109275 NA other downstream 1023651 632465 ~ 632897 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other upstream 78493 1741120 ~ 1964161 (-)
G109600 NA other upstream 1451215 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2432130 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3569584 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 4120040 5782667 ~ 5790534 (-)

Expression


Co-expression Network